Clone Sequence Records
BO17443.3prime Sequence
716 bp (670 high quality bases) assembled on 2006-10-13
> BO17443.3prime
ATGGTCTAGAAAGCTTGCAAACTCCATGACACTTTCCAGATGGCGTTGCT
TAAAGAAGCGGCACTCCTCGCGAATTATTTCGCCGGATTTTGTTGTGCCC
TTAAAGAACTTTGTGAGCTTGGTGCCGGCGTACTTGGGCTTCTCGGAATC
CGGCTCGTCGAACTCCATGTCATAGGCCTTGTCCGCCAGTGCGTTTTCCG
CGGTGGACCAACTGAAGCGCACAAGTCGTGGAAATCCAAACACTAGATCG
ATGTACTCGGTCAGAAATCTTCTTGTGACCGGATCTCCCGGATATCCACT
GCCGAACTCGTTATCCTTAATGACCAAGCCCTCGGGGAAGCTCCACACCT
TGAGGGCATGATCACGGGTGACTTTGGCGCATATACTAGCAGCAGAGACT
ATTGGATAGGTGGAGTCAGCTTTTTTCGCCACGGTGATTTTAAAGCTGGG
GAAACGTTTGAGCAACTTCTCCTGGTACTTCTCCGGCGGACCCACCGTAT
CCACATAAACCTCGGCTATATTGACGCCCGCATCGATCGCCTGTTGGATA
AGGCCCATGGCCGAGTCCATGGAAACTTCGTTCAGGGAGCACTTCGACCG
CCGGTACATGCTGGTGCTGATCGTGTTCGGCGATATGATCTCCACGGCCC
AGCCAACGCAACTGGTCGCATATTCCTTGGTGTTGATATCGTTAATATGA
TATCACGTTTCCCCTC
BO17443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-PA | 1044 | CG13690-RA | 365..1041 | 695..19 | 3335 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-RA | 1219 | CG13690-RA | 395..1093 | 716..19 | 3440 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 418560..419258 | 19..716 | 3415 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:23:20 has no hits.
BO17443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:21 Download gff for
BO17443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-PA | 343..1044 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:24 Download gff for
BO17443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 395..1099 | 15..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:03 Download gff for
BO17443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 395..1099 | 15..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:03 Download gff for
BO17443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 418554..419258 | 15..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:24 Download gff for
BO17443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 418554..419258 | 15..716 | 99 | | Plus |
BO17443.5prime Sequence
692 bp (592 high quality bases) assembled on 2006-10-13
> BO17443.5prime
GAAGTTATCAGTCGACATGTCGGACCAAGAAGACGTAGTTGTAAAAAAAG
AAAAAAAATGTATAGAAAATATTGATGAGAACGACGAAGAGCCCGATGAT
GTAGATTTTAAGGACAGCGGAAAAATAAGCTCCTTGAAGGCCCTGGGTCC
ATTTATAGCCGGCAAGGAGAATAGCCGCAACACGGTTTACCTCAGCGATG
TTCCGGATATTTGCAAGGATAAACCGTGCATGCTGGGCGTGGACGAAGCA
GGGCGTGGTCCCGTCCTGGGACCTATGGTATATGGGATCTCCTACTGTCC
ACTGGAAAGTAACAAGGCTTTAGAGGACCTGGGATGCGCCGATTCCAAAC
AACTAACCGAGGGGAAACGTGATATCATATTTAACGATATCAACACCAAG
GAATATGCGACCAGTTGCGTTGGCTGGGCCGTGGAGATCATATCGCCGAA
CACGATCAGCACCAGCATGTACCGGCGGTCGAAGTGCTCCCTGAACGAAG
TTTCCATGGACTCGGCCATGGGCCTTATCCAACAGGCGATCGATGCGGGC
GTCAATATAGCCGAGGTTTATGTGGATACGGTGGGTCCGCCGGAGAAGTA
CCAGGAGAAGTTGCTCAAACGTTTCCCCAGCTTTAAAATCACCGTGGCGA
AAAAAGCTTGACTCCACCTATCCAATAGTCTCTGCTGCTAGT
BO17443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-PA | 1044 | CG13690-RA | 1..642 | 17..658 | 3185 | 99.8 | Plus |
| CG13690-PA | 1044 | CG13690-RA | 642..675 | 659..692 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-RA | 1219 | CG13690-RA | 53..727 | 17..692 | 3340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 418926..419600 | 692..17 | 3315 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:29:10 has no hits.
BO17443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:21 Download gff for
BO17443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-PA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:06 Download gff for
BO17443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 53..727 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:47 Download gff for
BO17443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 53..727 | 17..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:47 Download gff for
BO17443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 418926..419600 | 17..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:06 Download gff for
BO17443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 418926..419600 | 17..692 | 99 | | Minus |
BO17443.complete Sequence
1075 bp assembled on 2006-10-11
GenBank Submission: FJ634123
> BO17443.complete
GAAGTTATCAGTCGACATGTCGGACCAAGAAGACGTAGTTGTAAAAAAAG
AAAAAAAATGTATAGAAAATATTGATGAGAACGACGAAGAGCCCGATGAT
GTAGATTTTAAGGACAGCGGAAAAATAAGCTCCTTGAAGGCCCTGGGTCC
ATTTATAGCCGGCAAGGAGAATAGCCGCAACACGGTTTACCTCAGCGATG
TTCCGGATATTTGCAAGGATAAACCGTGCATGCTGGGCGTGGACGAAGCA
GGGCGTGGTCCCGTCCTGGGACCTATGGTATATGGGATCTCCTACTGTCC
ACTGGAAAGTAACAAGGCTTTAGAGGACCTGGGATGCGCCGATTCCAAAC
AACTAACCGAGGGGAAACGTGATATCATATTTAACGATATCAACACCAAG
GAATATGCGACCAGTTGCGTTGGCTGGGCCGTGGAGATCATATCGCCGAA
CACGATCAGCACCAGCATGTACCGGCGGTCGAAGTGCTCCCTGAACGAAG
TTTCCATGGACTCGGCCATGGGCCTTATCCAACAGGCGATCGATGCGGGC
GTCAATATAGCCGAGGTTTATGTGGATACGGTGGGTCCGCCGGAGAAGTA
CCAGGAGAAGTTGCTCAAACGTTTCCCCAGCTTTAAAATCACCGTGGCGA
AAAAAGCTGACTCCACCTATCCAATAGTCTCTGCTGCTAGTATATGCGCC
AAAGTCACCCGTGATCATGCCCTCAAGGTGTGGAGCTTCCCCGAGGGCTT
GGTCATTAAGGATAACGAGTTCGGCAGTGGATATCCGGGAGATCCGGTCA
CAAGAAGATTTCTGACCGAGTACATCGATCTAGTGTTTGGATTTCCACGA
CTTGTGCGCTTCAGTTGGTCCACCGCGGAAAACGCACTGGCGGACAAGGC
CTATGACATGGAGTTCGACGAGCCGGATTCCGAGAAGCCCAAGTACGCCG
GCACCAAGCTCACAAAGTTCTTTAAGGGCACAACAAAATCCGGCGAAATA
ATTCGCGAGGAGTGCCGCTTCTTTAAGCAACGCCATCTGGAAAGTGTCAT
GGAGTTTGCAAGCTTTCTAGACCAT
BO17443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-RA | 1044 | CG13690-PA | 1..1041 | 17..1057 | 5160 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-RA | 1219 | CG13690-RA | 53..1093 | 17..1057 | 5160 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 418560..419600 | 1057..17 | 5160 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:28 has no hits.
BO17443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:46 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 1..1044 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:41 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 43..1089 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:59 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 53..1093 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:46 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 43..1089 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:17 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13690-RA | 53..1093 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:17 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 418556..419600 | 17..1059 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:59 Download gff for
BO17443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 418556..419600 | 17..1059 | 99 | | Minus |
BO17443.pep Sequence
Translation from 16 to 1075
> BO17443.pep
MSDQEDVVVKKEKKCIENIDENDEEPDDVDFKDSGKISSLKALGPFIAGK
ENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK
ALEDLGCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTS
MYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLL
KRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKDN
EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDMEF
DEPDSEKPKYAGTKLTKFFKGTTKSGEIIREECRFFKQRHLESVMEFASF
LDH
BO17443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13690-PA | 347 | CG13690-PA | 1..347 | 1..347 | 1816 | 100 | Plus |
