Clone BO17448 Report

Search the DGRC for BO17448

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17192-RA
Protein status:BO17448.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO17448.3prime Sequence

737 bp (649 high quality bases) assembled on 2006-10-13

> BO17448.3prime
ATGGTCTAGAAAGCTTGCTTCAGTTTGCCCGAATGGAGCCTCACTGTTTA
CAGGCACATAGAAGTGGCCCTCCACATTGTACGCATTCGTATCCTCTGCC
ATGCGGACGCTGCTGAAGGAGCTGCCACACTCATTGTCCAGAGCAGCCTG
GTAGTCCTGGCACTGGATAGCTCCGAAACTATTCTCGGTGATGGCCTCGG
CGTAGTAAATCACGGACCGGGCATGGGAACAAGTTCCTGCAAGGTCTACT
CCACATCCTGGTTGTTTCCGTCCTCCACTCACATAGAATGCGGCTTTTCC
AATGGGCTTTACGAATCCCTTTACGCCACCATTGGTCTGGATGGACTCGA
CATAGAAGGCATCTTCGCTAGATAGACGCTTGTCCGGGTTATCGTAGCTG
AAAAGGGGCAGGGCAGGATCCAGACCCACAATCGTGTGGACTCTCTTCTG
CCCAACTTGCTTACCAGCATAACCAGCCACATGGGCACCCAAACTATGTC
CAATCACCTCAAGGGTTTCAAGTGACATATCGTGATTTTCGTGCATGTAC
TGGATCATCTCTCCCACTTTGGTTCCAGCTCCAGGAACAGCTCGTACGGA
CATGGCATAGTCAACGGACTGGGACCGAGCCCAGTTCACAACGATCACGT
TAAAGTCTCCCTTTGAGAGCCAGGCCTTGGGTATATCGACATTCATGCTA
TCGGTATATTTTCCCTTCCATCCATGAATGACAAAAC

BO17448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 1014 CG17192-RA 293..1011 737..19 3570 99.8 Minus
CG6283-PA 1020 CG6283-RA 598..647 438..389 175 94 Minus
CG17191-PA 1014 CG17191-RA 436..476 594..554 155 95.1 Minus
CG17191-PA 1014 CG17191-RA 663..701 367..329 145 94.8 Minus
CG17191-PA 1014 CG17191-RA 529..572 501..458 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 298..1016 737..19 3580 99.9 Minus
CG17191-RA 1090 CG17191-RA 352..1025 702..29 1105 78 Minus
CG6283-RA 1083 CG6283-RA 381..1032 680..29 710 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017216..27017934 19..737 3580 99.9 Plus
3R 32079331 3R 27018673..27019319 29..675 1075 77.7 Plus
3R 32079331 3R 27020289..27020940 29..680 695 73.8 Plus
3R 32079331 3R 27022113..27022510 29..426 385 73.1 Plus
3R 32079331 3R 27025006..27025403 29..426 310 71.9 Plus
Blast to na_te.dros performed on 2015-02-08 12:18:34 has no hits.

BO17448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:27 Download gff for BO17448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-PA 293..1014 18..737 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:42 Download gff for BO17448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 298..1016 19..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:19 Download gff for BO17448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 298..1016 19..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:19 Download gff for BO17448.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27017216..27017934 19..737 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:42 Download gff for BO17448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22842938..22843656 19..737 99   Plus

BO17448.5prime Sequence

707 bp (633 high quality bases) assembled on 2006-10-13

> BO17448.5prime
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGGCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCC

BO17448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 1014 CG17192-RA 1..691 17..707 3430 99.8 Plus
CG17191-PA 1014 CG17191-RA 436..476 452..492 155 95.1 Plus
CG6283-PA 1020 CG6283-RA 598..647 608..657 150 92 Plus
CG17191-PA 1014 CG17191-RA 529..572 545..588 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 4..696 15..707 3450 99.9 Plus
CG17191-RA 1090 CG17191-RA 69..710 61..702 1095 78.6 Plus
CG6283-RA 1083 CG6283-RA 380..722 365..707 500 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017536..27018187 707..56 3245 99.8 Minus
3R 32079331 3R 27018988..27019629 702..61 1080 77.9 Minus
3R 32079331 3R 27020599..27020941 707..365 485 76.1 Minus
3R 32079331 3R 27018240..27018284 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:38:38 has no hits.

BO17448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:28 Download gff for BO17448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-PA 1..691 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:47 Download gff for BO17448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 2..696 13..707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:01 Download gff for BO17448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 2..696 13..707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:01 Download gff for BO17448.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27018243..27018290 7..56 92   Minus
3R 27017536..27018186 57..707 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:47 Download gff for BO17448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22843258..22843908 57..707 99 <- Minus
arm_3R 22843965..22844012 7..56 92   Minus

BO17448.complete Sequence

1045 bp assembled on 2006-10-11

GenBank Submission: FJ634124

> BO17448.complete
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AGCCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTACGCCGAG
GCCATCACCGAGAATAGTTTCGGAGCTATCCAGTGCCAGGACTACCAGGC
TGCTCTGGACAATGAGTGTGGCAGCTCCTTCAGCAGCGTCCGCATGGCAG
AGGATACGAATGCGTACAATGTGGAGGGCCACTTCTATGTGCCTGTAAAC
AGTGAGGCTCCATTCGGGCAAACTGAAGCAAGCTTTCTAGACCAT

BO17448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1014 CG17192-PA 1..1011 17..1027 5055 100 Plus
CG17191-RA 1014 CG17191-PA 45..1001 61..1017 1440 76.7 Plus
CG6283-RA 1020 CG6283-PA 355..1007 365..1017 700 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 4..1016 15..1027 5065 100 Plus
CG17191-RA 1090 CG17191-RA 69..1025 61..1017 1440 76.7 Plus
CG6283-RA 1083 CG6283-RA 380..1032 365..1017 700 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017216..27018187 1027..56 4860 100 Minus
3R 32079331 3R 27018673..27019629 1017..61 1440 76.7 Minus
3R 32079331 3R 27020289..27020941 1017..365 700 73.8 Minus
3R 32079331 3R 27022113..27022510 1017..620 385 73.1 Minus
3R 32079331 3R 27025006..27025403 1017..620 310 71.9 Minus
3R 32079331 3R 27018240..27018284 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:16:50 has no hits.

BO17448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:47 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 1..1014 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:43 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 2..1016 13..1027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:41 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 6..1016 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:47 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 2..1016 13..1027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:39 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 6..1016 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:39 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27017214..27018186 57..1029 99 <- Minus
3R 27018243..27018282 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:41 Download gff for BO17448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22842936..22843908 57..1029 99 <- Minus
arm_3R 22843965..22844004 17..56 100   Minus

BO17448.pep Sequence

Translation from 16 to 1045

> BO17448.pep
MRELFFLAALLVAGNALPIEERINGENGWFVPQEDGTFQWMDKKDAKELL
ENISPLEFRSNEVSFYLYTKQNPTEGQEITADASSIVASHFNKDHGTRFV
IHGWKGKYTDSMNVDITKAWLSKGDFNVIVVNWARSQSVDYAMSVRAVPG
AGTKVGEMIQYMHENHDMSLETLEVIGHSLGAHVAGYAGKQVGQKRVHTI
VGLDPALPLFSYDNPDKRLSSEDAFYVESIQTNGGVKGFVKPIGKAAFYV
SGGRKQPGCGVDLAGTCSHARSVIYYAEAITENSFGAIQCQDYQAALDNE
CGSSFSSVRMAEDTNAYNVEGHFYVPVNSEAPFGQTEASFLDH

BO17448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 337 CG17192-PA 1..337 1..337 1778 100 Plus
CG17191-PA 337 CG17191-PA 1..337 1..337 1358 73.9 Plus
CG6283-PA 339 CG6283-PA 1..339 1..337 1282 69.3 Plus
CG6277-PA 341 CG6277-PA 1..338 1..334 1094 61.1 Plus
CG6271-PA 341 CG6271-PA 1..338 1..334 1053 59 Plus