Clone Sequence Records
BO17448.3prime Sequence
737 bp (649 high quality bases) assembled on 2006-10-13
> BO17448.3prime
ATGGTCTAGAAAGCTTGCTTCAGTTTGCCCGAATGGAGCCTCACTGTTTA
CAGGCACATAGAAGTGGCCCTCCACATTGTACGCATTCGTATCCTCTGCC
ATGCGGACGCTGCTGAAGGAGCTGCCACACTCATTGTCCAGAGCAGCCTG
GTAGTCCTGGCACTGGATAGCTCCGAAACTATTCTCGGTGATGGCCTCGG
CGTAGTAAATCACGGACCGGGCATGGGAACAAGTTCCTGCAAGGTCTACT
CCACATCCTGGTTGTTTCCGTCCTCCACTCACATAGAATGCGGCTTTTCC
AATGGGCTTTACGAATCCCTTTACGCCACCATTGGTCTGGATGGACTCGA
CATAGAAGGCATCTTCGCTAGATAGACGCTTGTCCGGGTTATCGTAGCTG
AAAAGGGGCAGGGCAGGATCCAGACCCACAATCGTGTGGACTCTCTTCTG
CCCAACTTGCTTACCAGCATAACCAGCCACATGGGCACCCAAACTATGTC
CAATCACCTCAAGGGTTTCAAGTGACATATCGTGATTTTCGTGCATGTAC
TGGATCATCTCTCCCACTTTGGTTCCAGCTCCAGGAACAGCTCGTACGGA
CATGGCATAGTCAACGGACTGGGACCGAGCCCAGTTCACAACGATCACGT
TAAAGTCTCCCTTTGAGAGCCAGGCCTTGGGTATATCGACATTCATGCTA
TCGGTATATTTTCCCTTCCATCCATGAATGACAAAAC
BO17448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 1014 | CG17192-RA | 293..1011 | 737..19 | 3570 | 99.8 | Minus |
CG6283-PA | 1020 | CG6283-RA | 598..647 | 438..389 | 175 | 94 | Minus |
CG17191-PA | 1014 | CG17191-RA | 436..476 | 594..554 | 155 | 95.1 | Minus |
CG17191-PA | 1014 | CG17191-RA | 663..701 | 367..329 | 145 | 94.8 | Minus |
CG17191-PA | 1014 | CG17191-RA | 529..572 | 501..458 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 298..1016 | 737..19 | 3580 | 99.9 | Minus |
CG17191-RA | 1090 | CG17191-RA | 352..1025 | 702..29 | 1105 | 78 | Minus |
CG6283-RA | 1083 | CG6283-RA | 381..1032 | 680..29 | 710 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017216..27017934 | 19..737 | 3580 | 99.9 | Plus |
3R | 32079331 | 3R | 27018673..27019319 | 29..675 | 1075 | 77.7 | Plus |
3R | 32079331 | 3R | 27020289..27020940 | 29..680 | 695 | 73.8 | Plus |
3R | 32079331 | 3R | 27022113..27022510 | 29..426 | 385 | 73.1 | Plus |
3R | 32079331 | 3R | 27025006..27025403 | 29..426 | 310 | 71.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:18:34 has no hits.
BO17448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:27 Download gff for
BO17448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-PA | 293..1014 | 18..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:42 Download gff for
BO17448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 298..1016 | 19..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:19 Download gff for
BO17448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 298..1016 | 19..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:19 Download gff for
BO17448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27017216..27017934 | 19..737 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:42 Download gff for
BO17448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22842938..22843656 | 19..737 | 99 | | Plus |
BO17448.5prime Sequence
707 bp (633 high quality bases) assembled on 2006-10-13
> BO17448.5prime
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGGCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCC
BO17448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 1014 | CG17192-RA | 1..691 | 17..707 | 3430 | 99.8 | Plus |
CG17191-PA | 1014 | CG17191-RA | 436..476 | 452..492 | 155 | 95.1 | Plus |
CG6283-PA | 1020 | CG6283-RA | 598..647 | 608..657 | 150 | 92 | Plus |
CG17191-PA | 1014 | CG17191-RA | 529..572 | 545..588 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 4..696 | 15..707 | 3450 | 99.9 | Plus |
CG17191-RA | 1090 | CG17191-RA | 69..710 | 61..702 | 1095 | 78.6 | Plus |
CG6283-RA | 1083 | CG6283-RA | 380..722 | 365..707 | 500 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017536..27018187 | 707..56 | 3245 | 99.8 | Minus |
3R | 32079331 | 3R | 27018988..27019629 | 702..61 | 1080 | 77.9 | Minus |
3R | 32079331 | 3R | 27020599..27020941 | 707..365 | 485 | 76.1 | Minus |
3R | 32079331 | 3R | 27018240..27018284 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:38:38 has no hits.
BO17448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:28 Download gff for
BO17448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-PA | 1..691 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:47 Download gff for
BO17448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 2..696 | 13..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:01 Download gff for
BO17448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 2..696 | 13..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:01 Download gff for
BO17448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27018243..27018290 | 7..56 | 92 | | Minus |
3R | 27017536..27018186 | 57..707 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:47 Download gff for
BO17448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22843258..22843908 | 57..707 | 99 | <- | Minus |
arm_3R | 22843965..22844012 | 7..56 | 92 | | Minus |
BO17448.complete Sequence
1045 bp assembled on 2006-10-11
GenBank Submission: FJ634124
> BO17448.complete
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AGCCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTACGCCGAG
GCCATCACCGAGAATAGTTTCGGAGCTATCCAGTGCCAGGACTACCAGGC
TGCTCTGGACAATGAGTGTGGCAGCTCCTTCAGCAGCGTCCGCATGGCAG
AGGATACGAATGCGTACAATGTGGAGGGCCACTTCTATGTGCCTGTAAAC
AGTGAGGCTCCATTCGGGCAAACTGAAGCAAGCTTTCTAGACCAT
BO17448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1014 | CG17192-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG17191-RA | 1014 | CG17191-PA | 45..1001 | 61..1017 | 1440 | 76.7 | Plus |
CG6283-RA | 1020 | CG6283-PA | 355..1007 | 365..1017 | 700 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 4..1016 | 15..1027 | 5065 | 100 | Plus |
CG17191-RA | 1090 | CG17191-RA | 69..1025 | 61..1017 | 1440 | 76.7 | Plus |
CG6283-RA | 1083 | CG6283-RA | 380..1032 | 365..1017 | 700 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017216..27018187 | 1027..56 | 4860 | 100 | Minus |
3R | 32079331 | 3R | 27018673..27019629 | 1017..61 | 1440 | 76.7 | Minus |
3R | 32079331 | 3R | 27020289..27020941 | 1017..365 | 700 | 73.8 | Minus |
3R | 32079331 | 3R | 27022113..27022510 | 1017..620 | 385 | 73.1 | Minus |
3R | 32079331 | 3R | 27025006..27025403 | 1017..620 | 310 | 71.9 | Minus |
3R | 32079331 | 3R | 27018240..27018284 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:50 has no hits.
BO17448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:47 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:43 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 2..1016 | 13..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:41 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 6..1016 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:47 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 2..1016 | 13..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:39 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 6..1016 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:39 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27017214..27018186 | 57..1029 | 99 | <- | Minus |
3R | 27018243..27018282 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:41 Download gff for
BO17448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22842936..22843908 | 57..1029 | 99 | <- | Minus |
arm_3R | 22843965..22844004 | 17..56 | 100 | | Minus |
BO17448.pep Sequence
Translation from 16 to 1045
> BO17448.pep
MRELFFLAALLVAGNALPIEERINGENGWFVPQEDGTFQWMDKKDAKELL
ENISPLEFRSNEVSFYLYTKQNPTEGQEITADASSIVASHFNKDHGTRFV
IHGWKGKYTDSMNVDITKAWLSKGDFNVIVVNWARSQSVDYAMSVRAVPG
AGTKVGEMIQYMHENHDMSLETLEVIGHSLGAHVAGYAGKQVGQKRVHTI
VGLDPALPLFSYDNPDKRLSSEDAFYVESIQTNGGVKGFVKPIGKAAFYV
SGGRKQPGCGVDLAGTCSHARSVIYYAEAITENSFGAIQCQDYQAALDNE
CGSSFSSVRMAEDTNAYNVEGHFYVPVNSEAPFGQTEASFLDH
BO17448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 337 | CG17192-PA | 1..337 | 1..337 | 1778 | 100 | Plus |
CG17191-PA | 337 | CG17191-PA | 1..337 | 1..337 | 1358 | 73.9 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..339 | 1..337 | 1282 | 69.3 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..338 | 1..334 | 1094 | 61.1 | Plus |
CG6271-PA | 341 | CG6271-PA | 1..338 | 1..334 | 1053 | 59 | Plus |