Clone BO17449 Report

Search the DGRC for BO17449

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1631-RA
Protein status:BO17449.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO17449.3prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO17449.3prime
ATGGTCTAGAAAGCTTGCCTCAAAAAGCTCCATTTGGAAGATTTTTTCTT
CCTCCTTTGACTCGGACTTCTCCTCGCTCTGTTGATCCTTATCCTTTTCT
AGCAGGAAGATTGTCTCGCCAACGAACGGATTACTGCCTACCACTTCGAC
CTCATTCGAATTATCTTCGTCCTCGTCGCTCAGCATGAGCCGGTATGTAG
GAAGCCCAAACTCTGAGGATTCTCCAAACATATCGTATTCCCTGGCCTCG
TCGATGTCCTCGCCGTCGGACTCTACCTCTGAGCCCTCACTGTCGCCCTC
ACAGCAGAGGATCTCGTGGGCAAGCAGCGAAATAGTCTCTTCGCAGAAAT
TCTCCTGCTCCTCCTCCAAGTCGCTGTCTGATTCTGCCGACAGCAGACTG
TACATGCTCGTCTGCGGACTGGTGTCGGGATCGGCCACTGTGCAGCTCTC
ATCTTCGCTATCGCTAGTATAGTCGTCGCTGGTTAGCTCACTCTCGCTAG
TGGAAATATCCGAAACGTCCGCGTTTATGTTGATCTGGTCTCTGGAATTG
GCAGGGTCGCTGGCCATGTCGACTGATAACT

BO17449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-PA 552 CG1631-RA 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-RA 1178 CG1631-RA 159..709 569..19 2755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20327776..20328211 454..19 2180 100 Minus
X 23542271 X 20327602..20327722 569..449 590 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:23:45 has no hits.

BO17449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:29 Download gff for BO17449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-PA 1..552 18..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:28 Download gff for BO17449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 147..709 19..581 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:39 Download gff for BO17449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 147..709 19..581 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:39 Download gff for BO17449.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20327590..20327718 453..581 96 -> Minus
X 20327778..20328211 19..452 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:28 Download gff for BO17449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20198617..20198745 453..581 96 -> Minus
arm_X 20198805..20199238 19..452 100   Minus

BO17449.5prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO17449.5prime
GAAGTTATCAGTCGACATGGCCAGCGACCCTGCCAATTCCAGAGACCAGA
TCAACATAAACGCGGACGTTTCGGATATTTCCACTAGCGAGAGTGAGCTA
ACCAGCGACGACTATACTAGCGATAGCGAAGATGAGAGCTGCACAGTGGC
CGATCCCGACACCAGTCCGCAGACGAGCATGTACAGTCTGCTGTCGGCAG
AATCAGACAGCGACTTGGAGGAGGAGCAGGAGAATTTCTGCGAAGAGACT
ATTTCGCTGCTTGCCCACGAGATCCTCTGCTGTGAGGGCGACAGTGAGGG
CTCAGAGGTAGAGTCCGACGGCGAGGACATCGACGAGGCCAGGGAATACG
ATATGTTTGGAGAATCCTCAGAGTTTGGGCTTCCTACATACCGGCTCATG
CTGAGCGACGAGGACGAAGATAATTCGAATGAGGTCGAAGTGGTAGGCAG
TAATCCGTTCGTTGGCGAGACAATCTTCCTGCTAGAAAAGGATAAGGATC
AACAGAGCGAGGAGAAGTCCGAGTCAAAGGAGGAAGAAAAAATCTTCCAA
ATGGAGCTTTTTGAGGCAAGCTTTCTAGACC

BO17449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-PA 552 CG1631-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-RA 1178 CG1631-RA 159..709 15..565 2755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20327776..20328211 130..565 2180 100 Plus
X 23542271 X 20327602..20327722 15..135 590 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 21:29:38 has no hits.

BO17449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:30 Download gff for BO17449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-PA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:04 Download gff for BO17449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 147..709 3..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:16 Download gff for BO17449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 147..709 3..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:16 Download gff for BO17449.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20327590..20327718 3..131 96 -> Plus
X 20327778..20328211 132..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:04 Download gff for BO17449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20198617..20198745 3..131 96 -> Plus
arm_X 20198805..20199238 132..565 100   Plus

BO17449.complete Sequence

583 bp assembled on 2006-10-11

GenBank Submission: FJ634125

> BO17449.complete
GAAGTTATCAGTCGACATGGCCAGCGACCCTGCCAATTCCAGAGACCAGA
TCAACATAAACGCGGACGTTTCGGATATTTCCACTAGCGAGAGTGAGCTA
ACCAGCGACGACTATACTAGCGATAGCGAAGATGAGAGCTGCACAGTGGC
CGATCCCGACACCAGTCCGCAGACGAGCATGTACAGTCTGCTGTCGGCAG
AATCAGACAGCGACTTGGAGGAGGAGCAGGAGAATTTCTGCGAAGAGACT
ATTTCGCTGCTTGCCCACGAGATCCTCTGCTGTGAGGGCGACAGTGAGGG
CTCAGAGGTAGAGTCCGACGGCGAGGACATCGACGAGGCCAGGGAATACG
ATATGTTTGGAGAATCCTCAGAGTTTGGGCTTCCTACATACCGGCTCATG
CTGAGCGACGAGGACGAAGATAATTCGAATGAGGTCGAAGTGGTAGGCAG
TAATCCGTTCGTTGGCGAGACAATCTTCCTGCTAGAAAAGGATAAGGATC
AACAGAGCGAGGAGAAGTCCGAGTCAAAGGAGGAAGAAAAAATCTTCCAA
ATGGAGCTTTTTGAGGCAAGCTTTCTAGACCAT

BO17449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-RA 552 CG1631-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-RA 1178 CG1631-RA 159..709 15..565 2755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20327776..20328211 130..565 2180 100 Plus
X 23542271 X 20327602..20327722 15..135 590 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:34:31 has no hits.

BO17449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:48 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:44 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 97..659 3..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:07 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 161..709 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:48 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 97..659 3..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:38 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
CG1631-RA 161..709 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:38 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
X 20327604..20327718 17..131 100 -> Plus
X 20327778..20328211 132..567 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:07 Download gff for BO17449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20198631..20198745 17..131 100 -> Plus
arm_X 20198805..20199238 132..567 99   Plus

BO17449.pep Sequence

Translation from 16 to 583

> BO17449.pep
MASDPANSRDQININADVSDISTSESELTSDDYTSDSEDESCTVADPDTS
PQTSMYSLLSAESDSDLEEEQENFCEETISLLAHEILCCEGDSEGSEVES
DGEDIDEAREYDMFGESSEFGLPTYRLMLSDEDEDNSNEVEVVGSNPFVG
ETIFLLEKDKDQQSEEKSESKEEEKIFQMELFEASFLDH

BO17449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1631-PA 183 CG1631-PA 1..183 1..183 932 100 Plus