Clone Sequence Records
BO17449.3prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17449.3prime
ATGGTCTAGAAAGCTTGCCTCAAAAAGCTCCATTTGGAAGATTTTTTCTT
CCTCCTTTGACTCGGACTTCTCCTCGCTCTGTTGATCCTTATCCTTTTCT
AGCAGGAAGATTGTCTCGCCAACGAACGGATTACTGCCTACCACTTCGAC
CTCATTCGAATTATCTTCGTCCTCGTCGCTCAGCATGAGCCGGTATGTAG
GAAGCCCAAACTCTGAGGATTCTCCAAACATATCGTATTCCCTGGCCTCG
TCGATGTCCTCGCCGTCGGACTCTACCTCTGAGCCCTCACTGTCGCCCTC
ACAGCAGAGGATCTCGTGGGCAAGCAGCGAAATAGTCTCTTCGCAGAAAT
TCTCCTGCTCCTCCTCCAAGTCGCTGTCTGATTCTGCCGACAGCAGACTG
TACATGCTCGTCTGCGGACTGGTGTCGGGATCGGCCACTGTGCAGCTCTC
ATCTTCGCTATCGCTAGTATAGTCGTCGCTGGTTAGCTCACTCTCGCTAG
TGGAAATATCCGAAACGTCCGCGTTTATGTTGATCTGGTCTCTGGAATTG
GCAGGGTCGCTGGCCATGTCGACTGATAACT
BO17449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-PA | 552 | CG1631-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-RA | 1178 | CG1631-RA | 159..709 | 569..19 | 2755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20327776..20328211 | 454..19 | 2180 | 100 | Minus |
X | 23542271 | X | 20327602..20327722 | 569..449 | 590 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:23:45 has no hits.
BO17449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:29 Download gff for
BO17449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:28 Download gff for
BO17449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 147..709 | 19..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:39 Download gff for
BO17449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 147..709 | 19..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:39 Download gff for
BO17449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20327590..20327718 | 453..581 | 96 | -> | Minus |
X | 20327778..20328211 | 19..452 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:28 Download gff for
BO17449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20198617..20198745 | 453..581 | 96 | -> | Minus |
arm_X | 20198805..20199238 | 19..452 | 100 | | Minus |
BO17449.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17449.5prime
GAAGTTATCAGTCGACATGGCCAGCGACCCTGCCAATTCCAGAGACCAGA
TCAACATAAACGCGGACGTTTCGGATATTTCCACTAGCGAGAGTGAGCTA
ACCAGCGACGACTATACTAGCGATAGCGAAGATGAGAGCTGCACAGTGGC
CGATCCCGACACCAGTCCGCAGACGAGCATGTACAGTCTGCTGTCGGCAG
AATCAGACAGCGACTTGGAGGAGGAGCAGGAGAATTTCTGCGAAGAGACT
ATTTCGCTGCTTGCCCACGAGATCCTCTGCTGTGAGGGCGACAGTGAGGG
CTCAGAGGTAGAGTCCGACGGCGAGGACATCGACGAGGCCAGGGAATACG
ATATGTTTGGAGAATCCTCAGAGTTTGGGCTTCCTACATACCGGCTCATG
CTGAGCGACGAGGACGAAGATAATTCGAATGAGGTCGAAGTGGTAGGCAG
TAATCCGTTCGTTGGCGAGACAATCTTCCTGCTAGAAAAGGATAAGGATC
AACAGAGCGAGGAGAAGTCCGAGTCAAAGGAGGAAGAAAAAATCTTCCAA
ATGGAGCTTTTTGAGGCAAGCTTTCTAGACC
BO17449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-PA | 552 | CG1631-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-RA | 1178 | CG1631-RA | 159..709 | 15..565 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20327776..20328211 | 130..565 | 2180 | 100 | Plus |
X | 23542271 | X | 20327602..20327722 | 15..135 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:29:38 has no hits.
BO17449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:30 Download gff for
BO17449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:04 Download gff for
BO17449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 147..709 | 3..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:16 Download gff for
BO17449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 147..709 | 3..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:16 Download gff for
BO17449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20327590..20327718 | 3..131 | 96 | -> | Plus |
X | 20327778..20328211 | 132..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:04 Download gff for
BO17449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20198617..20198745 | 3..131 | 96 | -> | Plus |
arm_X | 20198805..20199238 | 132..565 | 100 | | Plus |
BO17449.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ634125
> BO17449.complete
GAAGTTATCAGTCGACATGGCCAGCGACCCTGCCAATTCCAGAGACCAGA
TCAACATAAACGCGGACGTTTCGGATATTTCCACTAGCGAGAGTGAGCTA
ACCAGCGACGACTATACTAGCGATAGCGAAGATGAGAGCTGCACAGTGGC
CGATCCCGACACCAGTCCGCAGACGAGCATGTACAGTCTGCTGTCGGCAG
AATCAGACAGCGACTTGGAGGAGGAGCAGGAGAATTTCTGCGAAGAGACT
ATTTCGCTGCTTGCCCACGAGATCCTCTGCTGTGAGGGCGACAGTGAGGG
CTCAGAGGTAGAGTCCGACGGCGAGGACATCGACGAGGCCAGGGAATACG
ATATGTTTGGAGAATCCTCAGAGTTTGGGCTTCCTACATACCGGCTCATG
CTGAGCGACGAGGACGAAGATAATTCGAATGAGGTCGAAGTGGTAGGCAG
TAATCCGTTCGTTGGCGAGACAATCTTCCTGCTAGAAAAGGATAAGGATC
AACAGAGCGAGGAGAAGTCCGAGTCAAAGGAGGAAGAAAAAATCTTCCAA
ATGGAGCTTTTTGAGGCAAGCTTTCTAGACCAT
BO17449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-RA | 552 | CG1631-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-RA | 1178 | CG1631-RA | 159..709 | 15..565 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20327776..20328211 | 130..565 | 2180 | 100 | Plus |
X | 23542271 | X | 20327602..20327722 | 15..135 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:34:31 has no hits.
BO17449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:48 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:44 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 97..659 | 3..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:07 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 161..709 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:48 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 97..659 | 3..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:38 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1631-RA | 161..709 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:38 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20327604..20327718 | 17..131 | 100 | -> | Plus |
X | 20327778..20328211 | 132..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:07 Download gff for
BO17449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20198631..20198745 | 17..131 | 100 | -> | Plus |
arm_X | 20198805..20199238 | 132..567 | 99 | | Plus |
BO17449.pep Sequence
Translation from 16 to 583
> BO17449.pep
MASDPANSRDQININADVSDISTSESELTSDDYTSDSEDESCTVADPDTS
PQTSMYSLLSAESDSDLEEEQENFCEETISLLAHEILCCEGDSEGSEVES
DGEDIDEAREYDMFGESSEFGLPTYRLMLSDEDEDNSNEVEVVGSNPFVG
ETIFLLEKDKDQQSEEKSESKEEEKIFQMELFEASFLDH
BO17449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1631-PA | 183 | CG1631-PA | 1..183 | 1..183 | 932 | 100 | Plus |