Clone Sequence Records
BO17452.3prime Sequence
700 bp (597 high quality bases) assembled on 2006-10-13
> BO17452.3prime
ATGGTCTAGAAAGCTTGCGTCCGGCAGACCCACGCTCACTCTCTGCCCCG
CTGAGCTGCGACGCGCCTGCGCAGTGGGCGGCGACTGCGACGCCGTACCG
CCCACCATCAAAGCGTCGCCGCTGAAGCAGAGGCTGCTGCGCAGGTGTTT
GCGAGGGTCAGAGGGCACGGGGGGATCTTCGTCGATAGTGTGTGTGTTAC
CCACTCCGGATTGGGTCTGTGGCATTTTTGGAAAGATTTTCCTACCATTG
CCGTTGGCCTGATAATTATTATTATTATTTAATGGCTTGCTCCGACTAGT
TTCCATAAAAGAGCGTTGATGTTGCTGCTGCTGCTGCTGCTGGCGACTTC
CTGTCGGCATATTTGGCTGCTGACGGTAGCGAGTTTCGTAGGTGGGCTCC
TCACGATCCTCGCGATCCTCCCGATCATCGCGATCCACCCGATCATCGTA
GTAGGCGTACTCGGCAGCCTCCTCGTTGTAGGTCACATGCTTTTTGGGCA
GTCCGGGACTTCGGGTTAGTTGCAATCTTCGGACTCGACTTTCCAGATGG
TCGTACGGGTCCTGATCCTGTGACGTTTGCTTCAGTATCCTTTTGGGCAG
GGGCAGTGGGCGTGGCCGCCGCCACTCGGGACTGTCGTTCAGGAGTTTCT
TGGTGACCTTGGGCTCCAGTTCCACGCTGAAACTGCGCACATTTCTTTTG
BO17452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 1233 | CG15546-RA | 549..1230 | 700..19 | 3385 | 99.8 | Minus |
| CG1770-PB | 3546 | HDAC4-RB | 169..196 | 342..315 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 601..1282 | 700..19 | 3395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30874905..30875586 | 19..700 | 3395 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 17:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 690..649 | 111 | 73.8 | Minus |
BO17452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:38 Download gff for
BO17452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-PA | 549..1233 | 16..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:14 Download gff for
BO17452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 601..1282 | 19..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:41 Download gff for
BO17452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 601..1282 | 19..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:41 Download gff for
BO17452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30874905..30875586 | 19..700 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:14 Download gff for
BO17452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26700627..26701308 | 19..700 | 99 | | Plus |
BO17452.5prime Sequence
703 bp (588 high quality bases) assembled on 2006-10-13
> BO17452.5prime
GAAGTTATCAGTCGACATGCTGAACGGAAAATTCTACACGGGCTTGCCGC
CCAAAATGGTGGAGCGCCAGGCGGTGAAGGTGTGCAATCGCCAGGAGTCG
CACTTCTTCTGGCCAGACGATTCCCGAGCGGATTCCGCGGTGGAAACCCG
AGCAAAGAGGAGAAACAGCCAGCAGCTGGAGAGGCCTGTGGAAAGGATTA
CTTCCAATCAGAATGTATCCGACGAAGTGGACACACGGCGAATGTTTCAC
AAGGAGTTTGCCAGTTCTTCCATACAGTTCTATGATAATCTGCAGTCTAA
TCCTGGAAATAAACCTTCATTGGCAAGGGGTCTACGCAGAGAAATAACCC
CAAAACTAACCGAAGTGAGACCGCAGGAATCGGATAACAAAGCTGAGGAC
ACCAGCAGCCGTCGCCAGCAGGCTTACAGCTCCAAGATCCAGTTCTACGA
TTATGTAAACGAAGCAGATAACCTAACTCAAAATAACGCCAGGAGACCAC
AAATGGACTTGAATGACAAGCGCGAAGTGGAACTGAATTCCAAGAACAGT
CCCAAGCTGCAGGTCAAAAGAAATGTGCGCAGTTTCAGCGTGGAACTGGA
GCCCAAGGTCACCAAGAAACCCCTGAACGACAGTCCCGAGTGGCGGCGGC
CACGCCCACTGCCCCTGCCCAAAAGATACTGAAGCAAACGTCACAGGATC
AGG
BO17452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 1233 | CG15546-RA | 1..659 | 17..675 | 3295 | 100 | Plus |
| CG15546-PA | 1233 | CG15546-RA | 660..688 | 675..703 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 52..740 | 16..703 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30875447..30876135 | 703..16 | 3395 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 17:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 575..616 | 111 | 73.8 | Plus |
BO17452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:38 Download gff for
BO17452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-PA | 1..688 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:15 Download gff for
BO17452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 42..740 | 7..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:21 Download gff for
BO17452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 42..740 | 7..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:21 Download gff for
BO17452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30875447..30876145 | 7..703 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:15 Download gff for
BO17452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26701169..26701867 | 7..703 | 99 | | Minus |
BO17452.complete Sequence
1264 bp assembled on 2006-10-11
GenBank Submission: FJ634126
> BO17452.complete
GAAGTTATCAGTCGACATGCTGAACGGAAAATTCTACACGGGCTTGCCGC
CCAAAATGGTGGAGCGCCAGGCGGTGAAGGTGTGCAATCGCCAGGAGTCG
CACTTCTTCTGGCCAGACGATTCCCGAGCGGATTCCGCGGTGGAAACCCG
AGCAAAGAGGAGAAACAGCCAGCAGCTGGAGAGGCCTGTGGAAAGGATTA
CTTCCAATCAGAATGTATCCGACGAAGTGGACACACGGCGAATGTTTCAC
AAGGAGTTTGCCAGTTCTTCCATACAGTTCTATGATAATCTGCAGTCTAA
TCCTGGAAATAAACCTTCATTGGCAAGGGGTCTACGCAGAGAAATAACCC
CAAAACTAACCGAAGTGAGACCGCAGGAATCGGATAACAAAGCTGAGGAC
ACCAGCAGCCGTCGCCAGCAGGCTTACAGCTCCAAGATCCAGTTCTACGA
TTATGTAAACGAAGCAGATAACCTAACTCAAAATAACGCCAGGAGACCAC
AAATGGACTTGAATGACAAGCGCGAAGTGGAACTGAATTCCAAGAACAGT
CCCAAGCTGCAGGTCAAAAGAAATGTGCGCAGTTTCAGCGTGGAACTGGA
GCCCAAGGTCACCAAGAAACCCCTGAACGACAGTCCCGAGTGGCGGCGGC
CACGCCCACTGCCCCTGCCCAAAAGGATACTGAAGCAAACGTCACAGGAT
CAGGACCCGTACGACCATCTGGAAAGTCGAGTCCGAAGATTGCAACTAAC
CCGAAGTCCCGGACTGCCCAAAAAGCATGTGACCTACAACGAGGAGGCTG
CCGAGTACGCCTACTACGATGATCGGGTGGATCGCGATGATCGGGAGGAT
CGCGAGGATCGTGAGGAGCCCACCTACGAAACTCGCTACCGTCAGCAGCC
AAATATGCCGACAGGAAGTCGCCAGCAGCAGCAGCAGCAGCAACATCAAC
GCTCTTTTATGGAAACTAGTCGGAGCAAGCCATTAAATAATAATAATAAT
TATCAGGCCAACGGCAATGGTAGGAAAATCTTTCCAAAAATGCCACAGAC
CCAATCCGGAGTGGGTAACACACACACTATCGACGAAGATCCCCCCGTGC
CCTCTGACCCTCGCAAACACCTGCGCAGCAGCCTCTGCTTCAGCGGCGAC
GCTTTGATGGTGGGCGGTACGGCGTCGCAGTCGCCGCCCACTGCGCAGGC
GCGTCGCAGCTCAGCGGGGCAGAGAGTGAGCGTGGGTCTGCCGGACGCAA
GCTTTCTAGACCAT
BO17452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1233 | CG15546-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 52..1282 | 16..1246 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30874905..30876135 | 1246..16 | 6155 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 575..616 | 111 | 73.8 | Plus |
BO17452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:49 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1233 | 17..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:46 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1233 | 17..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:38 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 53..1282 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:49 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1233 | 17..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:44 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 53..1282 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:44 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30874902..30876134 | 17..1248 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:38 Download gff for
BO17452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26700624..26701856 | 17..1248 | 99 | | Minus |
BO17452.pep Sequence
Translation from 16 to 1264
> BO17452.pep
MLNGKFYTGLPPKMVERQAVKVCNRQESHFFWPDDSRADSAVETRAKRRN
SQQLERPVERITSNQNVSDEVDTRRMFHKEFASSSIQFYDNLQSNPGNKP
SLARGLRREITPKLTEVRPQESDNKAEDTSSRRQQAYSSKIQFYDYVNEA
DNLTQNNARRPQMDLNDKREVELNSKNSPKLQVKRNVRSFSVELEPKVTK
KPLNDSPEWRRPRPLPLPKRILKQTSQDQDPYDHLESRVRRLQLTRSPGL
PKKHVTYNEEAAEYAYYDDRVDRDDREDREDREEPTYETRYRQQPNMPTG
SRQQQQQQQHQRSFMETSRSKPLNNNNNYQANGNGRKIFPKMPQTQSGVG
NTHTIDEDPPVPSDPRKHLRSSLCFSGDALMVGGTASQSPPTAQARRSSA
GQRVSVGLPDASFLDH
BO17452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 410 | CG15546-PA | 1..410 | 1..410 | 2154 | 100 | Plus |
