Clone Sequence Records
BO17453.3prime Sequence
798 bp (789 high quality bases) assembled on 2006-10-13
> BO17453.3prime
ATGGTCTAGAAAGCTTGCATGGTTTTCCGGCATGGCATCATCACAAACCT
TGTCCTTTTCCTCATTTTTACTGAGCTTACGGTTAAGATCAGCTAGCTCT
AGAGAAGCGCTCTCGAAGCCCACTAAACCTTCCTGGCAAAAATAGCCGTT
CCGAATCTGAGCCGGCAATAGCTTAAGGATCAGCTCCAGATTTTGGGGAT
GATCAGCCAGACGAGAATAGATCCTTACTACATGTTTAAGGACCCTAGGC
TCCGGTTCCAGTGTGAGTTGGTGCACAACCCTGGCCAAAGTATGGATCAG
ATGCAGCTTTCGTGCCAGTCTTCGACTGGCAAACTTTAAGCCCACTTCAT
GTTCTAAGGTGCGGTACAAGACAAATGCACAGAGCACCTTACTCATTGTG
GTACCAAACTCCAGCTGCCGCAGGGTAAGTGGAATTAATTCAGTGCCCAA
AAAATAAGATACGATCTCCGGATGATCTGATTTCAGTAGACCGCAAATGA
CGCCCAAGACAGAGAGACGAACATGCTCAACGGCGCGAGTTTGAGAAGTC
ATTTTAAGCAATGGCATCAAATAGCACATGAATTGGCATCGTATGAGTTG
AATACCAATGAAGGGATGTGATGCCATAGCCTGAATCAGCCCAATGGCAG
TGCAAATCCGGTGCGACTGTTGGCCGGTTAATTCAATTTCTTGATAAATG
GCCGGATATATTGACACAATCTCTTGTAGCAAGCCACTCACAGCTCCAAA
GGAATGCCATAGCAAGAGTCCTAGGCTGTCAATGTGGGTGCGCCTTTC
BO17453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PA | 897 | CG2053-RA | 115..894 | 798..19 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 268..1054 | 798..12 | 3905 | 99.7 | Minus |
CG2053-RA | 1231 | CG2053-RA | 268..1054 | 798..12 | 3905 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038597..32039347 | 798..48 | 3755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:18:45 has no hits.
BO17453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:40 Download gff for
BO17453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-PA | 115..897 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:44 Download gff for
BO17453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 225..1011 | 12..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:21 Download gff for
BO17453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 268..1054 | 12..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:21 Download gff for
BO17453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038597..32039347 | 48..798 | 100 | -> | Minus |
3R | 32039398..32039433 | 12..47 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:44 Download gff for
BO17453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864319..27865069 | 48..798 | 100 | -> | Minus |
arm_3R | 27865120..27865155 | 12..47 | 94 | | Minus |
BO17453.5prime Sequence
775 bp (773 high quality bases) assembled on 2006-10-13
> BO17453.5prime
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATT
BO17453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PA | 897 | CG2053-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 154..912 | 17..775 | 3795 | 100 | Plus |
CG2053-RA | 1231 | CG2053-RA | 154..912 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038483..32039241 | 17..775 | 3795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:23:54 has no hits.
BO17453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:41 Download gff for
BO17453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:30 Download gff for
BO17453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..869 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:00 Download gff for
BO17453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 154..912 | 17..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:00 Download gff for
BO17453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038483..32039241 | 17..775 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:30 Download gff for
BO17453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864205..27864963 | 17..775 | 100 | | Plus |
BO17453.complete Sequence
928 bp assembled on 2006-10-11
GenBank Submission: FJ634127
> BO17453.complete
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTGCCAGGAAG
GTTTAGTGGGCTTCGAGAGCGCTTCTCTAGAGCTAGCTGATCTTAACCGT
AAGCTCAGTAAAAATGAGGAAAAGGACAAGGTTTGTGATGATGCCATGCC
GGAAAACCATGCAAGCTTTCTAGACCAT
BO17453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 897 | CG2053-PB | 1..894 | 17..910 | 4470 | 100 | Plus |
CG2053-RA | 897 | CG2053-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 154..1054 | 17..917 | 4475 | 99.8 | Plus |
CG2053-RA | 1231 | CG2053-RA | 154..1054 | 17..917 | 4475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038483..32039347 | 17..881 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:43 has no hits.
BO17453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:50 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:48 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..1011 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:37 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..1004 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:50 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..1011 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:51 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 154..1047 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:51 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038483..32039347 | 17..881 | 100 | -> | Plus |
3R | 32039398..32039426 | 882..912 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:37 Download gff for
BO17453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864205..27865069 | 17..881 | 100 | -> | Plus |
arm_3R | 27865120..27865148 | 882..912 | 93 | | Plus |
BO17453.pep Sequence
Translation from 16 to 928
> BO17453.pep
MSAPNMDCEQRGDIDSVFGWIANLCNKETRLWAMLELFERRTHIDSLGLL
LWHSFGAVSGLLQEIVSIYPAIYQEIELTGQQSHRICTAIGLIQAMASHP
FIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGVICGLLKSDHPEI
VSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLA
RKLHLIHTLARVVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLP
AQIRNGYFCQEGLVGFESASLELADLNRKLSKNEEKDKVCDDAMPENHAS
FLDH
BO17453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PB | 298 | CG2053-PB | 1..298 | 1..298 | 1543 | 100 | Plus |
CG2053-PA | 298 | CG2053-PA | 1..298 | 1..298 | 1543 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 21..267 | 9..258 | 469 | 40 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 21..267 | 9..258 | 469 | 40 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 29..264 | 20..258 | 457 | 41 | Plus |