Clone BO17453 Report

Search the DGRC for BO17453

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG2053-RA
Protein status:BO17453.pep: validated full length
Sequenced Size:928

Clone Sequence Records

BO17453.3prime Sequence

798 bp (789 high quality bases) assembled on 2006-10-13

> BO17453.3prime
ATGGTCTAGAAAGCTTGCATGGTTTTCCGGCATGGCATCATCACAAACCT
TGTCCTTTTCCTCATTTTTACTGAGCTTACGGTTAAGATCAGCTAGCTCT
AGAGAAGCGCTCTCGAAGCCCACTAAACCTTCCTGGCAAAAATAGCCGTT
CCGAATCTGAGCCGGCAATAGCTTAAGGATCAGCTCCAGATTTTGGGGAT
GATCAGCCAGACGAGAATAGATCCTTACTACATGTTTAAGGACCCTAGGC
TCCGGTTCCAGTGTGAGTTGGTGCACAACCCTGGCCAAAGTATGGATCAG
ATGCAGCTTTCGTGCCAGTCTTCGACTGGCAAACTTTAAGCCCACTTCAT
GTTCTAAGGTGCGGTACAAGACAAATGCACAGAGCACCTTACTCATTGTG
GTACCAAACTCCAGCTGCCGCAGGGTAAGTGGAATTAATTCAGTGCCCAA
AAAATAAGATACGATCTCCGGATGATCTGATTTCAGTAGACCGCAAATGA
CGCCCAAGACAGAGAGACGAACATGCTCAACGGCGCGAGTTTGAGAAGTC
ATTTTAAGCAATGGCATCAAATAGCACATGAATTGGCATCGTATGAGTTG
AATACCAATGAAGGGATGTGATGCCATAGCCTGAATCAGCCCAATGGCAG
TGCAAATCCGGTGCGACTGTTGGCCGGTTAATTCAATTTCTTGATAAATG
GCCGGATATATTGACACAATCTCTTGTAGCAAGCCACTCACAGCTCCAAA
GGAATGCCATAGCAAGAGTCCTAGGCTGTCAATGTGGGTGCGCCTTTC

BO17453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PA 897 CG2053-RA 115..894 798..19 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 268..1054 798..12 3905 99.7 Minus
CG2053-RA 1231 CG2053-RA 268..1054 798..12 3905 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038597..32039347 798..48 3755 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:18:45 has no hits.

BO17453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:40 Download gff for BO17453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-PA 115..897 16..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:44 Download gff for BO17453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 225..1011 12..798 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:21 Download gff for BO17453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 268..1054 12..798 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:21 Download gff for BO17453.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 32038597..32039347 48..798 100 -> Minus
3R 32039398..32039433 12..47 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:44 Download gff for BO17453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864319..27865069 48..798 100 -> Minus
arm_3R 27865120..27865155 12..47 94   Minus

BO17453.5prime Sequence

775 bp (773 high quality bases) assembled on 2006-10-13

> BO17453.5prime
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATT

BO17453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PA 897 CG2053-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 154..912 17..775 3795 100 Plus
CG2053-RA 1231 CG2053-RA 154..912 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038483..32039241 17..775 3795 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:23:54 has no hits.

BO17453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:41 Download gff for BO17453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:30 Download gff for BO17453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..869 17..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:00 Download gff for BO17453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 154..912 17..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:00 Download gff for BO17453.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 32038483..32039241 17..775 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:30 Download gff for BO17453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864205..27864963 17..775 100   Plus

BO17453.complete Sequence

928 bp assembled on 2006-10-11

GenBank Submission: FJ634127

> BO17453.complete
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTGCCAGGAAG
GTTTAGTGGGCTTCGAGAGCGCTTCTCTAGAGCTAGCTGATCTTAACCGT
AAGCTCAGTAAAAATGAGGAAAAGGACAAGGTTTGTGATGATGCCATGCC
GGAAAACCATGCAAGCTTTCTAGACCAT

BO17453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 897 CG2053-PB 1..894 17..910 4470 100 Plus
CG2053-RA 897 CG2053-PA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 154..1054 17..917 4475 99.8 Plus
CG2053-RA 1231 CG2053-RA 154..1054 17..917 4475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038483..32039347 17..881 4325 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:43 has no hits.

BO17453.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:50 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:48 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..1011 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:37 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..1004 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:50 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..1011 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:51 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 154..1047 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:51 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32038483..32039347 17..881 100 -> Plus
3R 32039398..32039426 882..912 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:37 Download gff for BO17453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864205..27865069 17..881 100 -> Plus
arm_3R 27865120..27865148 882..912 93   Plus

BO17453.pep Sequence

Translation from 16 to 928

> BO17453.pep
MSAPNMDCEQRGDIDSVFGWIANLCNKETRLWAMLELFERRTHIDSLGLL
LWHSFGAVSGLLQEIVSIYPAIYQEIELTGQQSHRICTAIGLIQAMASHP
FIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGVICGLLKSDHPEI
VSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLA
RKLHLIHTLARVVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLP
AQIRNGYFCQEGLVGFESASLELADLNRKLSKNEEKDKVCDDAMPENHAS
FLDH

BO17453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PB 298 CG2053-PB 1..298 1..298 1543 100 Plus
CG2053-PA 298 CG2053-PA 1..298 1..298 1543 100 Plus
Rcd-1-PA 304 CG14213-PA 21..267 9..258 469 40 Plus
Rcd-1-PB 304 CG14213-PB 21..267 9..258 469 40 Plus
Rcd-1-PC 301 CG14213-PC 29..264 20..258 457 41 Plus