Clone BO17456 Report

Search the DGRC for BO17456

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG4683-RA
Protein status:BO17456.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO17456.3prime Sequence

806 bp (730 high quality bases) assembled on 2006-10-13

> BO17456.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGAAATCCGTCATTGAGGGCGGTTTTA
CAGGCAATTCAAGTTGATCCCGCTGCTGGCCATCACAGAATTTGAGTCCT
GCGAAGTGTTCAATATCACGAACATCGGCTAAAAATGAGCGCAGATCCAT
ATCCTTGTCGACATATGCATTGGGAACAACATAACCTTCCATAATGGGCA
TATCCCTATTAAACTCATCCTCTCTTATGATGATTTTGAAGAAGTGCGTT
GGAACAGCAACCGTGTTCATGCCCATTACATGGTAACGCACAGACCAGTT
CCTGAACGTTATCCTTTGGGGCATAAACAGAGGACCGGTATAAACATGAA
CTGAATCGAATTCGATCGCCTTGTCTCTAACATAGCTTTCCAAACGGTAC
CAAATATGGTTTTTCAGCCCTCGATTAATGGGCACGATATTCGTAAACTT
GTAGGCCTCCAAAAACTTCAGCGCATCGCATTTGTAGTTTTGAGGGGAGG
CCAAGTGACCACCAACCCAATCGGAATTCTTAAAGTCCCGCATATTTGCA
CTAAATATCGTTGGTATTGTATTGTCTGTTATGTAGGCATTTGGCTTATT
CAATGTCTTTTCATCCCTCTCCTGTACGCATCCGCTTTTGACATGTTCAC
ATACCCAATGGGCAATACGATTGCGACGATCGTATGAGAGTACGAAGTTT
TTATAGACGTGTATTTCATCCATGCCCGGAAATCCATACTTCATAATATC
AGCTACATGTTCAATATTCTCATGTCTGCTTCCTTTTGGCCCGACAGATA
ATGTCA

BO17456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4683-PA 1137 CG4683-RA 347..1134 806..19 3915 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 495..1282 806..19 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950884..10951671 806..19 3925 99.9 Minus
Blast to na_te.dros performed on 2015-02-03 06:53:02 has no hits.

BO17456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:43 Download gff for BO17456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4683-PA 348..1137 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:49 Download gff for BO17456.3prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 496..1287 12..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:17 Download gff for BO17456.3prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 496..1287 12..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:17 Download gff for BO17456.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10950885..10951676 12..805 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:49 Download gff for BO17456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776607..6777398 12..805 99   Minus

BO17456.5prime Sequence

855 bp (757 high quality bases) assembled on 2006-10-13

> BO17456.5prime
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGGC
GATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCCC
AAAAG

BO17456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4683-PA 1137 CG4683-RA 1..742 17..758 3710 100 Plus
CG4683-PA 1137 CG4683-RA 740..838 755..853 495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 149..986 17..853 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950874..10951375 353..853 2460 99.8 Plus
3R 32079331 3R 10950643..10950819 176..352 885 100 Plus
3R 32079331 3R 10950432..10950590 17..175 795 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:55:13 has no hits.

BO17456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:44 Download gff for BO17456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4683-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:45 Download gff for BO17456.5prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 131..987 2..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:39 Download gff for BO17456.5prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 131..987 2..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:39 Download gff for BO17456.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10950414..10950590 2..175 97 -> Plus
3R 10950643..10950819 176..352 100 -> Plus
3R 10950874..10951376 353..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:45 Download gff for BO17456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776136..6776312 2..175 97 -> Plus
arm_3R 6776365..6776541 176..352 100 -> Plus
arm_3R 6776596..6777098 353..855 99   Plus

BO17456.complete Sequence

1168 bp assembled on 2006-10-11

GenBank Submission: FJ634128

> BO17456.complete
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGTTGCTGTTCCAACGCACTTCTTCAAAATCATCATAAGAGAGG
ATGAGTTTAATAGGGATATGCCCATTATGGAAGGTTATGTTGTTCCCAAT
GCATATGTCGACAAGGATATGGATCTGCGCTCATTTTTAGCCGATGTTCG
TGATATTGAACACTTCGCAGGACTCAAATTCTGTGATGGCCAGCAGCGGG
ATCAACTTGAATTGCCTGTAAAACCGCCCTCAATGACGGATTTCCAGAAC
GCAAGCTTTCTAGACCAT

BO17456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1137 CG4683-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 149..1282 17..1150 5670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950874..10951671 353..1150 3990 100 Plus
3R 32079331 3R 10950643..10950819 176..352 885 100 Plus
3R 32079331 3R 10950432..10950590 17..175 795 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:10:12 has no hits.

BO17456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:14 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 1..1137 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:29 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 96..1250 2..1153 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:14 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 154..1282 22..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:14 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 96..1250 2..1153 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:20 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 154..1282 22..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:20 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10950437..10950590 22..175 100 -> Plus
3R 10950643..10950819 176..352 100 -> Plus
3R 10950874..10951671 353..1152 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:14 Download gff for BO17456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776159..6776312 22..175 100 -> Plus
arm_3R 6776365..6776541 176..352 100 -> Plus
arm_3R 6776596..6777393 353..1152 99   Plus

BO17456.pep Sequence

Translation from 16 to 1168

> BO17456.pep
MLTYVAIALCAVTGASCFILGALVQQHLSFRQIKSVMLTDPYVYQCRQPI
YRALSMFGHSSRKSITRTESNQTASIGDESGTSKRYSERQDPGSVSIFEH
FLLWGRRKAHNAISKMTLSVGPNGSRHENIEHVADIMKYGFPGMDEIHVY
KNFVLSYDRRNRIAHWVCEHVKSGCVQERDEKTLNKPNAYITDNTIPTIF
SANMRDFKNSDWVGGHLASPQNYKCDALKFLEAYKFTNIVPINRGLKNHI
WYRLESYVRDKAIEFDSVHVYTGPLFMPQRITFRNWSVRYHVMGMNTVAV
PTHFFKIIIREDEFNRDMPIMEGYVVPNAYVDKDMDLRSFLADVRDIEHF
AGLKFCDGQQRDQLELPVKPPSMTDFQNASFLDH

BO17456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-PA 378 CG4683-PA 1..378 1..378 2022 100 Plus
Tengl2-PA 318 CG32463-PA 64..302 125..364 545 43.2 Plus
EndoG-PA 310 CG8862-PA 73..302 133..364 398 36.1 Plus
Tengl3-PA 337 CG31679-PA 12..292 8..355 316 26.4 Plus
Tengl1-PA 319 CG31682-PA 72..276 128..362 303 29.7 Plus