Clone Sequence Records
BO17456.3prime Sequence
806 bp (730 high quality bases) assembled on 2006-10-13
> BO17456.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGAAATCCGTCATTGAGGGCGGTTTTA
CAGGCAATTCAAGTTGATCCCGCTGCTGGCCATCACAGAATTTGAGTCCT
GCGAAGTGTTCAATATCACGAACATCGGCTAAAAATGAGCGCAGATCCAT
ATCCTTGTCGACATATGCATTGGGAACAACATAACCTTCCATAATGGGCA
TATCCCTATTAAACTCATCCTCTCTTATGATGATTTTGAAGAAGTGCGTT
GGAACAGCAACCGTGTTCATGCCCATTACATGGTAACGCACAGACCAGTT
CCTGAACGTTATCCTTTGGGGCATAAACAGAGGACCGGTATAAACATGAA
CTGAATCGAATTCGATCGCCTTGTCTCTAACATAGCTTTCCAAACGGTAC
CAAATATGGTTTTTCAGCCCTCGATTAATGGGCACGATATTCGTAAACTT
GTAGGCCTCCAAAAACTTCAGCGCATCGCATTTGTAGTTTTGAGGGGAGG
CCAAGTGACCACCAACCCAATCGGAATTCTTAAAGTCCCGCATATTTGCA
CTAAATATCGTTGGTATTGTATTGTCTGTTATGTAGGCATTTGGCTTATT
CAATGTCTTTTCATCCCTCTCCTGTACGCATCCGCTTTTGACATGTTCAC
ATACCCAATGGGCAATACGATTGCGACGATCGTATGAGAGTACGAAGTTT
TTATAGACGTGTATTTCATCCATGCCCGGAAATCCATACTTCATAATATC
AGCTACATGTTCAATATTCTCATGTCTGCTTCCTTTTGGCCCGACAGATA
ATGTCA
BO17456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4683-PA | 1137 | CG4683-RA | 347..1134 | 806..19 | 3915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 495..1282 | 806..19 | 3925 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950884..10951671 | 806..19 | 3925 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:53:02 has no hits.
BO17456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:43 Download gff for
BO17456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-PA | 348..1137 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:49 Download gff for
BO17456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 496..1287 | 12..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:17 Download gff for
BO17456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 496..1287 | 12..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:17 Download gff for
BO17456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950885..10951676 | 12..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:49 Download gff for
BO17456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776607..6777398 | 12..805 | 99 | | Minus |
BO17456.5prime Sequence
855 bp (757 high quality bases) assembled on 2006-10-13
> BO17456.5prime
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGGC
GATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCCC
AAAAG
BO17456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4683-PA | 1137 | CG4683-RA | 1..742 | 17..758 | 3710 | 100 | Plus |
CG4683-PA | 1137 | CG4683-RA | 740..838 | 755..853 | 495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 149..986 | 17..853 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950874..10951375 | 353..853 | 2460 | 99.8 | Plus |
3R | 32079331 | 3R | 10950643..10950819 | 176..352 | 885 | 100 | Plus |
3R | 32079331 | 3R | 10950432..10950590 | 17..175 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:55:13 has no hits.
BO17456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:44 Download gff for
BO17456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:45 Download gff for
BO17456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 131..987 | 2..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:39 Download gff for
BO17456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 131..987 | 2..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:39 Download gff for
BO17456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950414..10950590 | 2..175 | 97 | -> | Plus |
3R | 10950643..10950819 | 176..352 | 100 | -> | Plus |
3R | 10950874..10951376 | 353..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:45 Download gff for
BO17456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776136..6776312 | 2..175 | 97 | -> | Plus |
arm_3R | 6776365..6776541 | 176..352 | 100 | -> | Plus |
arm_3R | 6776596..6777098 | 353..855 | 99 | | Plus |
BO17456.complete Sequence
1168 bp assembled on 2006-10-11
GenBank Submission: FJ634128
> BO17456.complete
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGTTGCTGTTCCAACGCACTTCTTCAAAATCATCATAAGAGAGG
ATGAGTTTAATAGGGATATGCCCATTATGGAAGGTTATGTTGTTCCCAAT
GCATATGTCGACAAGGATATGGATCTGCGCTCATTTTTAGCCGATGTTCG
TGATATTGAACACTTCGCAGGACTCAAATTCTGTGATGGCCAGCAGCGGG
ATCAACTTGAATTGCCTGTAAAACCGCCCTCAATGACGGATTTCCAGAAC
GCAAGCTTTCTAGACCAT
BO17456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1137 | CG4683-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 149..1282 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950874..10951671 | 353..1150 | 3990 | 100 | Plus |
3R | 32079331 | 3R | 10950643..10950819 | 176..352 | 885 | 100 | Plus |
3R | 32079331 | 3R | 10950432..10950590 | 17..175 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:10:12 has no hits.
BO17456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:14 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 1..1137 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:29 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 96..1250 | 2..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:14 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 154..1282 | 22..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:14 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 96..1250 | 2..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:20 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 154..1282 | 22..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:20 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950437..10950590 | 22..175 | 100 | -> | Plus |
3R | 10950643..10950819 | 176..352 | 100 | -> | Plus |
3R | 10950874..10951671 | 353..1152 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:14 Download gff for
BO17456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776159..6776312 | 22..175 | 100 | -> | Plus |
arm_3R | 6776365..6776541 | 176..352 | 100 | -> | Plus |
arm_3R | 6776596..6777393 | 353..1152 | 99 | | Plus |
BO17456.pep Sequence
Translation from 16 to 1168
> BO17456.pep
MLTYVAIALCAVTGASCFILGALVQQHLSFRQIKSVMLTDPYVYQCRQPI
YRALSMFGHSSRKSITRTESNQTASIGDESGTSKRYSERQDPGSVSIFEH
FLLWGRRKAHNAISKMTLSVGPNGSRHENIEHVADIMKYGFPGMDEIHVY
KNFVLSYDRRNRIAHWVCEHVKSGCVQERDEKTLNKPNAYITDNTIPTIF
SANMRDFKNSDWVGGHLASPQNYKCDALKFLEAYKFTNIVPINRGLKNHI
WYRLESYVRDKAIEFDSVHVYTGPLFMPQRITFRNWSVRYHVMGMNTVAV
PTHFFKIIIREDEFNRDMPIMEGYVVPNAYVDKDMDLRSFLADVRDIEHF
AGLKFCDGQQRDQLELPVKPPSMTDFQNASFLDH
BO17456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-PA | 378 | CG4683-PA | 1..378 | 1..378 | 2022 | 100 | Plus |
Tengl2-PA | 318 | CG32463-PA | 64..302 | 125..364 | 545 | 43.2 | Plus |
EndoG-PA | 310 | CG8862-PA | 73..302 | 133..364 | 398 | 36.1 | Plus |
Tengl3-PA | 337 | CG31679-PA | 12..292 | 8..355 | 316 | 26.4 | Plus |
Tengl1-PA | 319 | CG31682-PA | 72..276 | 128..362 | 303 | 29.7 | Plus |