Clone Sequence Records
BO17457.3prime Sequence
643 bp (568 high quality bases) assembled on 2006-10-13
> BO17457.3prime
ATGGTCTAGAAAGCTTGCTGCATTATTTATGTCGTTAATTACCCGATCAT
AAAGAATTTCTTTAATATTCAGTCCCCACAGAAAGTCGATATGATTCCAC
TTTTCTTCCGGCATGCGATATGCGCTTTTCAGGGCGCTCGGGTTCATGGT
ATACCTAAGGCGATCCACGTCAATCAGACTAGCAAAGTAGTCGTTGTCAG
AGTAATAGAGATAGGTGGGCACATCGATGCCCTCCACATCGTACTCCGGC
GGGGTCTTGCTGCTGTACTCCTTCTTGTTGCGCGTAGATCCGTAGTCGAA
TTGCCGGAAGTATCCGGAATTGTACTCCTGCAGGTAGTGGAAGATCTGAT
TTACTGAGCATCCCGCCGGAGTGGTGGCCATAATATCTGGGAGCAGGGTC
TCGTTGATATATGGCGAGTTCCAGCCGCCCAGCAGGAATAGGGTGTTGGT
GCACATGAACTGTGAAATGGCCTCATCGCTGCAGAGGAGAGCCCCGAACA
GGTTCATTAGCTGTGTATTTGGCAAAAATTCGGCGCTGCCGAAGAGCTCG
ACGAAGGCATTGGGCTGACCAAGCAGTGGTCCACCGACCGTGGCCAAAGG
ACTCTCCATATGCTCCATCCAGGCCACAGGAGCGAGCAAATGA
BO17457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-PA | 1197 | CG8093-RA | 570..1194 | 643..19 | 3125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-RB | 1555 | CG8093-RB | 656..1280 | 643..19 | 3125 | 100 | Minus |
CG8093-RA | 1334 | CG8093-RA | 656..1280 | 643..19 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15214335..15214959 | 19..643 | 3125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:55:04 has no hits.
BO17457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:45 Download gff for
BO17457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-PA | 571..1197 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:33:33 Download gff for
BO17457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 657..1283 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:42 Download gff for
BO17457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 657..1283 | 15..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:42 Download gff for
BO17457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15214331..15214958 | 15..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:33:33 Download gff for
BO17457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11101836..11102463 | 15..642 | 99 | | Plus |
BO17457.5prime Sequence
645 bp (623 high quality bases) assembled on 2006-10-13
> BO17457.5prime
GAAGTTATCAGTCGACATGTTGGTGGTTCAGCTAATTGCGGTTTTTTTAA
GTCTGGGCTTGGCTAATGCCCTGCCTGCGGATACGGGGCGCGCCAGTTCG
GTGACAACTGTCACCATTGTTAGGGGACACGGTTACGAAATCGAGGAGCA
CGAGGTGCAGACCTCGGATGGTTACATCCTCACAATGCACCGCATACCGT
ACTCGAAGAACACTGGGTACGATGGGCCACGCCCTGTTGTCTTCCTTATG
CACGGTCTGTTGTGTTCCTCCTCGGATTGGGTTCTTGCTGGACCTCACAG
TGGGCTGGCATACCTGCTGTCCGAAGCGGGCTACGATGTGTGGATGGGTA
ATGCCAGAGGCAACACCTACTCCAAAAGACACGCCAGCAAGTCGCCGCTG
CTGCAGCCCTTCTGGAATTTTGAGTGGCACGATATCGGAATCTATGATCT
GCCCGCTATGATGGATTACGTCCTTTACTGGACAAATGTGACTCAACTTA
CGTATGTGGGTCACTCTCAAGGAACCACATCCTTTTTTGTGCTCAACTCT
ATGATTCCGCGCTTCAAGAGTCGCATTCGATCTGCTCATTTGCTCGCTCC
TGTGGCCTGGATGGAGCATATGGAGAGTCTTTTGGCCACGGTCGG
BO17457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-PA | 1197 | CG8093-RA | 1..629 | 17..645 | 3120 | 99.8 | Plus |
CG8823-PA | 1185 | Lip3-RA | 304..350 | 329..375 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-RB | 1555 | CG8093-RB | 87..715 | 17..645 | 3130 | 99.8 | Plus |
CG8093-RA | 1334 | CG8093-RA | 87..715 | 17..645 | 3130 | 99.8 | Plus |
Lip3-RA | 1434 | CG8823-RA | 374..508 | 241..375 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15214900..15215435 | 645..110 | 2665 | 99.8 | Minus |
2R | 25286936 | 2R | 15215506..15215600 | 111..17 | 475 | 100 | Minus |
3R | 32079331 | 3R | 13371243..13371377 | 375..241 | 240 | 78.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:21:35 has no hits.
BO17457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:45 Download gff for
BO17457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-PA | 1..629 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:17:40 Download gff for
BO17457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 87..715 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:21 Download gff for
BO17457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 87..715 | 17..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:21 Download gff for
BO17457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15214900..15215435 | 110..645 | 99 | <- | Minus |
2R | 15215508..15215600 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:17:40 Download gff for
BO17457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11102405..11102940 | 110..645 | 99 | <- | Minus |
arm_2R | 11103013..11103105 | 17..109 | 100 | | Minus |
BO17457.complete Sequence
1228 bp assembled on 2007-03-23
GenBank Submission: FJ638753
> BO17457.complete
GAAGTTATCAGTCGACATGTTGGTGGTTCAGCTAATTGCGGTTTTTTTAA
GTCTGGGCTTGGCTAATGCCCTGCCTGCGGATACGGGGCGCGCCAGTTCG
GTGACAACTGTCACCATTGTTAGGGGACACGGTTACGAAATCGAGGAGCA
CGAGGTGCAGACCTCGGATGGTTACATCCTCACAATGCACCGCATACCGT
ACTCGAAGAACACTGGGTACGATGGGCCACGCCCTGTTGTCTTCCTTATG
CACGGTCTGTTGTGTTCCTCCTCGGATTGGGTTCTTGCTGGACCTCACAG
TGGGCTGGCATACCTGCTGTCCGAAGCGGGCTACGATGTGTGGATGGGTA
ATGCCAGAGGCAACACCTACTCCAAAAGACACGCCAGCAAGTCGCCGCTG
CTGCAGCCCTTCTGGAATTTTGAGTGGCACGATATCGGAATCTATGATCT
GCCCGCTATGATGGATTACGTCCTTTACTGGACAAATGTGACTCAACTTA
CGTATGTGGGTCACTCTCAAGGAACCACATCCTTTTTTGTGCTCAACTCT
ATGATTCCGCGCTTCAAGAGTCGCATTCGATCTGCTCATTTGCTCGCTCC
TGTGGCCTGGATGGAGCATATGGAGAGTCCTTTGGCCACGGTCGGTGGAC
CACTGCTTGGTCAGCCCAATGCCTTCGTCGAGCTCTTCGGCAGCGCCGAA
TTTTTGCCAAATACACAGCTAATGAACCTGTTCGGGGCTCTCCTCTGCAG
CGATGAGGCCATTTCACAGTTCATGTGCACCAACACCCTATTCCTGCTGG
GCGGCTGGAACTCGCCATATATCAACGAGACCCTGCTCCCAGATATTATG
GCCACCACTCCGGCGGGATGCTCAGTAAATCAGATCTTCCACTACCTGCA
GGAGTACAATTCCGGATACTTCCGGCAATTCGACTACGGATCTACGCGCA
ACAAGAAGGAGTACAGCAGCAAGACCCCGCCGGAGTACGATGTGGAGGGC
ATCGATGTGCCCACCTATCTCTATTACTCTGACAACGACTACTTTGCTAG
TCTGATTGACGTGGATCGCCTTAGGTATACCATGAACCCGAGCGCCCTGA
AAAGCGCATATCGCATGCCGGAAGAAAAGTGGAATCATATCGACTTTCTG
TGGGGACTGAATATTAAAGAAATTCTTTATGATCGGGTAATTAACGACAT
AAATAATGCAGCAAGCTTTCTAGACCAT
BO17457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-RB | 1197 | CG8093-PB | 1..1194 | 17..1210 | 5970 | 100 | Plus |
CG8093-RA | 1197 | CG8093-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Lip3-RA | 1185 | CG8823-PA | 216..350 | 241..375 | 240 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-RB | 1555 | CG8093-RB | 87..1280 | 17..1210 | 5970 | 100 | Plus |
CG8093-RA | 1334 | CG8093-RA | 87..1280 | 17..1210 | 5970 | 100 | Plus |
Lip3-RA | 1434 | CG8823-RA | 374..508 | 241..375 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15214335..15215435 | 1210..110 | 5505 | 100 | Minus |
2R | 25286936 | 2R | 15215506..15215600 | 111..17 | 475 | 100 | Minus |
3R | 32079331 | 3R | 13371243..13371377 | 375..241 | 240 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:43:07 has no hits.
BO17457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:31 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:09 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:17 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 92..1280 | 22..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:31 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:33 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8093-RA | 92..1280 | 22..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:33 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15214333..15215435 | 110..1212 | 99 | <- | Minus |
2R | 15215508..15215595 | 22..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:17 Download gff for
BO17457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11101838..11102940 | 110..1212 | 99 | <- | Minus |
arm_2R | 11103013..11103100 | 22..109 | 100 | | Minus |
BO17457.pep Sequence
Translation from 16 to 1228
> BO17457.pep
MLVVQLIAVFLSLGLANALPADTGRASSVTTVTIVRGHGYEIEEHEVQTS
DGYILTMHRIPYSKNTGYDGPRPVVFLMHGLLCSSSDWVLAGPHSGLAYL
LSEAGYDVWMGNARGNTYSKRHASKSPLLQPFWNFEWHDIGIYDLPAMMD
YVLYWTNVTQLTYVGHSQGTTSFFVLNSMIPRFKSRIRSAHLLAPVAWME
HMESPLATVGGPLLGQPNAFVELFGSAEFLPNTQLMNLFGALLCSDEAIS
QFMCTNTLFLLGGWNSPYINETLLPDIMATTPAGCSVNQIFHYLQEYNSG
YFRQFDYGSTRNKKEYSSKTPPEYDVEGIDVPTYLYYSDNDYFASLIDVD
RLRYTMNPSALKSAYRMPEEKWNHIDFLWGLNIKEILYDRVINDINNAAS
FLDH
BO17457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8093-PB | 398 | CG8093-PB | 1..398 | 1..398 | 2135 | 100 | Plus |
CG8093-PA | 398 | CG8093-PA | 1..398 | 1..398 | 2135 | 100 | Plus |
Lip3-PA | 394 | CG8823-PA | 6..392 | 2..397 | 998 | 49.4 | Plus |
CG3635-PB | 425 | CG3635-PB | 51..415 | 31..395 | 919 | 46.5 | Plus |
CG31871-PA | 531 | CG31871-PA | 67..434 | 19..395 | 860 | 44.6 | Plus |