Clone BO17457 Report

Search the DGRC for BO17457

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG8093-RA
Protein status:BO17457.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO17457.3prime Sequence

643 bp (568 high quality bases) assembled on 2006-10-13

> BO17457.3prime
ATGGTCTAGAAAGCTTGCTGCATTATTTATGTCGTTAATTACCCGATCAT
AAAGAATTTCTTTAATATTCAGTCCCCACAGAAAGTCGATATGATTCCAC
TTTTCTTCCGGCATGCGATATGCGCTTTTCAGGGCGCTCGGGTTCATGGT
ATACCTAAGGCGATCCACGTCAATCAGACTAGCAAAGTAGTCGTTGTCAG
AGTAATAGAGATAGGTGGGCACATCGATGCCCTCCACATCGTACTCCGGC
GGGGTCTTGCTGCTGTACTCCTTCTTGTTGCGCGTAGATCCGTAGTCGAA
TTGCCGGAAGTATCCGGAATTGTACTCCTGCAGGTAGTGGAAGATCTGAT
TTACTGAGCATCCCGCCGGAGTGGTGGCCATAATATCTGGGAGCAGGGTC
TCGTTGATATATGGCGAGTTCCAGCCGCCCAGCAGGAATAGGGTGTTGGT
GCACATGAACTGTGAAATGGCCTCATCGCTGCAGAGGAGAGCCCCGAACA
GGTTCATTAGCTGTGTATTTGGCAAAAATTCGGCGCTGCCGAAGAGCTCG
ACGAAGGCATTGGGCTGACCAAGCAGTGGTCCACCGACCGTGGCCAAAGG
ACTCTCCATATGCTCCATCCAGGCCACAGGAGCGAGCAAATGA

BO17457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-PA 1197 CG8093-RA 570..1194 643..19 3125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-RB 1555 CG8093-RB 656..1280 643..19 3125 100 Minus
CG8093-RA 1334 CG8093-RA 656..1280 643..19 3125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15214335..15214959 19..643 3125 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:55:04 has no hits.

BO17457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:45 Download gff for BO17457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-PA 571..1197 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:33:33 Download gff for BO17457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 657..1283 15..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:42 Download gff for BO17457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 657..1283 15..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:42 Download gff for BO17457.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15214331..15214958 15..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:33:33 Download gff for BO17457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11101836..11102463 15..642 99   Plus

BO17457.5prime Sequence

645 bp (623 high quality bases) assembled on 2006-10-13

> BO17457.5prime
GAAGTTATCAGTCGACATGTTGGTGGTTCAGCTAATTGCGGTTTTTTTAA
GTCTGGGCTTGGCTAATGCCCTGCCTGCGGATACGGGGCGCGCCAGTTCG
GTGACAACTGTCACCATTGTTAGGGGACACGGTTACGAAATCGAGGAGCA
CGAGGTGCAGACCTCGGATGGTTACATCCTCACAATGCACCGCATACCGT
ACTCGAAGAACACTGGGTACGATGGGCCACGCCCTGTTGTCTTCCTTATG
CACGGTCTGTTGTGTTCCTCCTCGGATTGGGTTCTTGCTGGACCTCACAG
TGGGCTGGCATACCTGCTGTCCGAAGCGGGCTACGATGTGTGGATGGGTA
ATGCCAGAGGCAACACCTACTCCAAAAGACACGCCAGCAAGTCGCCGCTG
CTGCAGCCCTTCTGGAATTTTGAGTGGCACGATATCGGAATCTATGATCT
GCCCGCTATGATGGATTACGTCCTTTACTGGACAAATGTGACTCAACTTA
CGTATGTGGGTCACTCTCAAGGAACCACATCCTTTTTTGTGCTCAACTCT
ATGATTCCGCGCTTCAAGAGTCGCATTCGATCTGCTCATTTGCTCGCTCC
TGTGGCCTGGATGGAGCATATGGAGAGTCTTTTGGCCACGGTCGG

BO17457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-PA 1197 CG8093-RA 1..629 17..645 3120 99.8 Plus
CG8823-PA 1185 Lip3-RA 304..350 329..375 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-RB 1555 CG8093-RB 87..715 17..645 3130 99.8 Plus
CG8093-RA 1334 CG8093-RA 87..715 17..645 3130 99.8 Plus
Lip3-RA 1434 CG8823-RA 374..508 241..375 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15214900..15215435 645..110 2665 99.8 Minus
2R 25286936 2R 15215506..15215600 111..17 475 100 Minus
3R 32079331 3R 13371243..13371377 375..241 240 78.5 Minus
Blast to na_te.dros performed on 2015-02-13 06:21:35 has no hits.

BO17457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:45 Download gff for BO17457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-PA 1..629 17..645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:17:40 Download gff for BO17457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 87..715 17..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:21 Download gff for BO17457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 87..715 17..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:21 Download gff for BO17457.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15214900..15215435 110..645 99 <- Minus
2R 15215508..15215600 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:17:40 Download gff for BO17457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11102405..11102940 110..645 99 <- Minus
arm_2R 11103013..11103105 17..109 100   Minus

BO17457.complete Sequence

1228 bp assembled on 2007-03-23

GenBank Submission: FJ638753

> BO17457.complete
GAAGTTATCAGTCGACATGTTGGTGGTTCAGCTAATTGCGGTTTTTTTAA
GTCTGGGCTTGGCTAATGCCCTGCCTGCGGATACGGGGCGCGCCAGTTCG
GTGACAACTGTCACCATTGTTAGGGGACACGGTTACGAAATCGAGGAGCA
CGAGGTGCAGACCTCGGATGGTTACATCCTCACAATGCACCGCATACCGT
ACTCGAAGAACACTGGGTACGATGGGCCACGCCCTGTTGTCTTCCTTATG
CACGGTCTGTTGTGTTCCTCCTCGGATTGGGTTCTTGCTGGACCTCACAG
TGGGCTGGCATACCTGCTGTCCGAAGCGGGCTACGATGTGTGGATGGGTA
ATGCCAGAGGCAACACCTACTCCAAAAGACACGCCAGCAAGTCGCCGCTG
CTGCAGCCCTTCTGGAATTTTGAGTGGCACGATATCGGAATCTATGATCT
GCCCGCTATGATGGATTACGTCCTTTACTGGACAAATGTGACTCAACTTA
CGTATGTGGGTCACTCTCAAGGAACCACATCCTTTTTTGTGCTCAACTCT
ATGATTCCGCGCTTCAAGAGTCGCATTCGATCTGCTCATTTGCTCGCTCC
TGTGGCCTGGATGGAGCATATGGAGAGTCCTTTGGCCACGGTCGGTGGAC
CACTGCTTGGTCAGCCCAATGCCTTCGTCGAGCTCTTCGGCAGCGCCGAA
TTTTTGCCAAATACACAGCTAATGAACCTGTTCGGGGCTCTCCTCTGCAG
CGATGAGGCCATTTCACAGTTCATGTGCACCAACACCCTATTCCTGCTGG
GCGGCTGGAACTCGCCATATATCAACGAGACCCTGCTCCCAGATATTATG
GCCACCACTCCGGCGGGATGCTCAGTAAATCAGATCTTCCACTACCTGCA
GGAGTACAATTCCGGATACTTCCGGCAATTCGACTACGGATCTACGCGCA
ACAAGAAGGAGTACAGCAGCAAGACCCCGCCGGAGTACGATGTGGAGGGC
ATCGATGTGCCCACCTATCTCTATTACTCTGACAACGACTACTTTGCTAG
TCTGATTGACGTGGATCGCCTTAGGTATACCATGAACCCGAGCGCCCTGA
AAAGCGCATATCGCATGCCGGAAGAAAAGTGGAATCATATCGACTTTCTG
TGGGGACTGAATATTAAAGAAATTCTTTATGATCGGGTAATTAACGACAT
AAATAATGCAGCAAGCTTTCTAGACCAT

BO17457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-RB 1197 CG8093-PB 1..1194 17..1210 5970 100 Plus
CG8093-RA 1197 CG8093-PA 1..1194 17..1210 5970 100 Plus
Lip3-RA 1185 CG8823-PA 216..350 241..375 240 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-RB 1555 CG8093-RB 87..1280 17..1210 5970 100 Plus
CG8093-RA 1334 CG8093-RA 87..1280 17..1210 5970 100 Plus
Lip3-RA 1434 CG8823-RA 374..508 241..375 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15214335..15215435 1210..110 5505 100 Minus
2R 25286936 2R 15215506..15215600 111..17 475 100 Minus
3R 32079331 3R 13371243..13371377 375..241 240 78.5 Minus
Blast to na_te.dros performed on 2014-11-27 01:43:07 has no hits.

BO17457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:31 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 1..1197 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:09 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 1..1197 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:17 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 92..1280 22..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:31 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 1..1197 17..1214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:33 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
CG8093-RA 92..1280 22..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:33 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15214333..15215435 110..1212 99 <- Minus
2R 15215508..15215595 22..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:17 Download gff for BO17457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11101838..11102940 110..1212 99 <- Minus
arm_2R 11103013..11103100 22..109 100   Minus

BO17457.pep Sequence

Translation from 16 to 1228

> BO17457.pep
MLVVQLIAVFLSLGLANALPADTGRASSVTTVTIVRGHGYEIEEHEVQTS
DGYILTMHRIPYSKNTGYDGPRPVVFLMHGLLCSSSDWVLAGPHSGLAYL
LSEAGYDVWMGNARGNTYSKRHASKSPLLQPFWNFEWHDIGIYDLPAMMD
YVLYWTNVTQLTYVGHSQGTTSFFVLNSMIPRFKSRIRSAHLLAPVAWME
HMESPLATVGGPLLGQPNAFVELFGSAEFLPNTQLMNLFGALLCSDEAIS
QFMCTNTLFLLGGWNSPYINETLLPDIMATTPAGCSVNQIFHYLQEYNSG
YFRQFDYGSTRNKKEYSSKTPPEYDVEGIDVPTYLYYSDNDYFASLIDVD
RLRYTMNPSALKSAYRMPEEKWNHIDFLWGLNIKEILYDRVINDINNAAS
FLDH

BO17457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8093-PB 398 CG8093-PB 1..398 1..398 2135 100 Plus
CG8093-PA 398 CG8093-PA 1..398 1..398 2135 100 Plus
Lip3-PA 394 CG8823-PA 6..392 2..397 998 49.4 Plus
CG3635-PB 425 CG3635-PB 51..415 31..395 919 46.5 Plus
CG31871-PA 531 CG31871-PA 67..434 19..395 860 44.6 Plus