Clone Sequence Records
BO17458.3prime Sequence
871 bp (753 high quality bases) assembled on 2006-10-13
> BO17458.3prime
ATGGTCTAGAAAGCTTGCTCTTGGTGAGGAGAAGCTCTTGAAGCTCTCCA
CTCGCGTTCTTTCGCCACGGAAGCTGATGTGCAGATCAAAGTTCATGCCA
CGTCCATCTTGTCCGGTGGGCGTCATGGCCAGCACACCGCGCACCCGATC
CCTAATCCTCACATACAGTGGCTCATCCAGATGGAGCACCGTCTGCTCCC
AGTGCGTCCATGGCGAATGCGGCGAGGTGGTCAGGCTTACGGATTTGTTC
GACTTTCCCGACGGAAACAAGACATCGAAGTACAGGACCAGCATATTGAT
AATTCCAGTTCGCATGACTTTTAATTGAAAGTTCGATTGAAACTCCACCG
GCTGGTTGCGGGCCACAGCCAGGTTGGTGGAGTGTATGAAGCATTCGTCG
GTGAGCAACTGCTGGATGGGCACAAACTCCACCAAGGGCTCCTGGGAGAA
TGGCTTCCTCACACAGCCCATGTCGATGCCCTCCACGTTGCACCAAAAGT
TAAGATTAGTCCGCCGATGCGGATCATAGGCCCCCATTAACCAGAGGTTT
CCAGTGCTGGGCAGGATTCGCCCACCACGCGTGAGCCACTTATCCCGGGC
AAACAGCACGGAGTTTATCATGGCCTCCATATACAGAGCATTTCCCATCC
ATTCGGAAACTATGATGTCCACCTTCTCAATGCCGTCGGGCAGCTCCACT
TGCTCCACCAATCCCTTGACCACCTTCACCACATTCTCCTTCTGATTGTC
CCTTATTATCTCCTCGGCTATATCCGCTATATCGGTGCATTCAACGGCTA
TAACTTTACTGGCACCAGCCTCGGCGGCGAAAAGGGATAGTATACCCGTG
CCACAGCCCACATCCAGCACG
BO17458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9927-PA | 1026 | Art6-RA | 171..1023 | 871..19 | 4265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 201..1053 | 871..19 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944702..13945327 | 19..644 | 3130 | 100 | Plus |
3R | 32079331 | 3R | 13945385..13945612 | 644..871 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:18:57 has no hits.
BO17458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:46 Download gff for
BO17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9927-PA | 171..1026 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:45 Download gff for
BO17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 201..1060 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:22 Download gff for
BO17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 201..1060 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:22 Download gff for
BO17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13945385..13945612 | 644..871 | 100 | | Plus |
3R | 13944695..13945326 | 12..643 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:45 Download gff for
BO17458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9770417..9771048 | 12..643 | 99 | <- | Plus |
arm_3R | 9771107..9771334 | 644..871 | 100 | | Plus |
BO17458.5prime Sequence
857 bp (728 high quality bases) assembled on 2006-10-13
> BO17458.5prime
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTTATCATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAAGCTGACCACCTCGCCGCATTCGCCATGG
ACGCACT
BO17458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9927-PA | 1026 | Art6-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
CG9927-PA | 1026 | Art6-RA | 746..841 | 762..857 | 430 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 31..871 | 17..857 | 4130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944884..13945327 | 857..414 | 2130 | 98.6 | Minus |
3R | 32079331 | 3R | 13945385..13945782 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:29:59 has no hits.
BO17458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:48 Download gff for
BO17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9927-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:08 Download gff for
BO17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..871 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:48 Download gff for
BO17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..871 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:48 Download gff for
BO17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13944884..13945326 | 415..857 | 99 | <- | Minus |
3R | 13945385..13945782 | 17..414 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:08 Download gff for
BO17458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9770606..9771048 | 415..857 | 99 | <- | Minus |
arm_3R | 9771107..9771504 | 17..414 | 100 | | Minus |
BO17458.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ634129
> BO17458.complete
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAGCCTGACCACCTCGCCGCATTCGCCATGG
ACGCACTGGGAGCAGACGGTGCTCCATCTGGATGAGCCACTGTATGTGAG
GATTAGGGATCGGGTGCGCGGTGTGCTGGCCATGACGCCCACCGGACAAG
ATGGACGTGGCATGAACTTTGATCTGCACATCAGCTTCCGTGGCGAAAGA
ACGCGAGTGGAGAGCTTCAAGAGCTTCTCCTCACCAAGAGCAAGCTTTCT
AGACCAT
BO17458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1026 | CG9927-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-RA | 1101 | CG9927-RA | 31..1053 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13944702..13945327 | 1039..414 | 3130 | 100 | Minus |
3R | 32079331 | 3R | 13945385..13945782 | 414..17 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:17 has no hits.
BO17458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:51 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:49 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:22 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..1053 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:51 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:38 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art6-RA | 31..1053 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:38 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13944699..13945326 | 415..1041 | 99 | <- | Minus |
3R | 13945385..13945782 | 17..414 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:22 Download gff for
BO17458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9770421..9771048 | 415..1041 | 99 | <- | Minus |
arm_3R | 9771107..9771504 | 17..414 | 100 | | Minus |
BO17458.pep Sequence
Translation from 16 to 1057
> BO17458.pep
MSFNANQKLPFLEGKDSDYFQSYSRLETHMNMLRDSVRMQAFRDAIVQDG
GLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVECTDIADIAEEIIRDNQ
KENVVKVVKGLVEQVELPDGIEKVDIIVSEWMGNALYMEAMINSVLFARD
KWLTRGGRILPSTGNLWLMGAYDPHRRTNLNFWCNVEGIDMGCVRKPFSQ
EPLVEFVPIQQLLTDECFIHSTNLAVARNQPVEFQSNFQLKVMRTGIINM
LVLYFDVLFPSGKSNKSVSLTTSPHSPWTHWEQTVLHLDEPLYVRIRDRV
RGVLAMTPTGQDGRGMNFDLHISFRGERTRVESFKSFSSPRASFLDH
BO17458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art6-PA | 341 | CG9927-PA | 1..341 | 1..341 | 1780 | 100 | Plus |
Art2-PB | 355 | CG3675-PB | 18..346 | 4..337 | 705 | 42.8 | Plus |
Art2-PA | 355 | CG3675-PA | 18..346 | 4..337 | 705 | 42.8 | Plus |
Art1-PA | 376 | CG6554-PA | 56..373 | 19..337 | 705 | 40.6 | Plus |
Art3-PB | 474 | CG6563-PB | 163..464 | 16..322 | 521 | 38.5 | Plus |