Clone BO17458 Report

Search the DGRC for BO17458

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptArt6-RA
Protein status:BO17458.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO17458.3prime Sequence

871 bp (753 high quality bases) assembled on 2006-10-13

> BO17458.3prime
ATGGTCTAGAAAGCTTGCTCTTGGTGAGGAGAAGCTCTTGAAGCTCTCCA
CTCGCGTTCTTTCGCCACGGAAGCTGATGTGCAGATCAAAGTTCATGCCA
CGTCCATCTTGTCCGGTGGGCGTCATGGCCAGCACACCGCGCACCCGATC
CCTAATCCTCACATACAGTGGCTCATCCAGATGGAGCACCGTCTGCTCCC
AGTGCGTCCATGGCGAATGCGGCGAGGTGGTCAGGCTTACGGATTTGTTC
GACTTTCCCGACGGAAACAAGACATCGAAGTACAGGACCAGCATATTGAT
AATTCCAGTTCGCATGACTTTTAATTGAAAGTTCGATTGAAACTCCACCG
GCTGGTTGCGGGCCACAGCCAGGTTGGTGGAGTGTATGAAGCATTCGTCG
GTGAGCAACTGCTGGATGGGCACAAACTCCACCAAGGGCTCCTGGGAGAA
TGGCTTCCTCACACAGCCCATGTCGATGCCCTCCACGTTGCACCAAAAGT
TAAGATTAGTCCGCCGATGCGGATCATAGGCCCCCATTAACCAGAGGTTT
CCAGTGCTGGGCAGGATTCGCCCACCACGCGTGAGCCACTTATCCCGGGC
AAACAGCACGGAGTTTATCATGGCCTCCATATACAGAGCATTTCCCATCC
ATTCGGAAACTATGATGTCCACCTTCTCAATGCCGTCGGGCAGCTCCACT
TGCTCCACCAATCCCTTGACCACCTTCACCACATTCTCCTTCTGATTGTC
CCTTATTATCTCCTCGGCTATATCCGCTATATCGGTGCATTCAACGGCTA
TAACTTTACTGGCACCAGCCTCGGCGGCGAAAAGGGATAGTATACCCGTG
CCACAGCCCACATCCAGCACG

BO17458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9927-PA 1026 Art6-RA 171..1023 871..19 4265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 201..1053 871..19 4265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944702..13945327 19..644 3130 100 Plus
3R 32079331 3R 13945385..13945612 644..871 1140 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:18:57 has no hits.

BO17458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:46 Download gff for BO17458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9927-PA 171..1026 16..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:45 Download gff for BO17458.3prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 201..1060 12..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:22 Download gff for BO17458.3prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 201..1060 12..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:22 Download gff for BO17458.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13945385..13945612 644..871 100   Plus
3R 13944695..13945326 12..643 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:45 Download gff for BO17458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9770417..9771048 12..643 99 <- Plus
arm_3R 9771107..9771334 644..871 100   Plus

BO17458.5prime Sequence

857 bp (728 high quality bases) assembled on 2006-10-13

> BO17458.5prime
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTTATCATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAAGCTGACCACCTCGCCGCATTCGCCATGG
ACGCACT

BO17458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9927-PA 1026 Art6-RA 1..741 17..757 3705 100 Plus
CG9927-PA 1026 Art6-RA 746..841 762..857 430 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 31..871 17..857 4130 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944884..13945327 857..414 2130 98.6 Minus
3R 32079331 3R 13945385..13945782 414..17 1990 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:29:59 has no hits.

BO17458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:48 Download gff for BO17458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9927-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:08 Download gff for BO17458.5prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..871 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:48 Download gff for BO17458.5prime
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..871 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:48 Download gff for BO17458.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13944884..13945326 415..857 99 <- Minus
3R 13945385..13945782 17..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:08 Download gff for BO17458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9770606..9771048 415..857 99 <- Minus
arm_3R 9771107..9771504 17..414 100   Minus

BO17458.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ634129

> BO17458.complete
GAAGTTATCAGTCGACATGTCTTTTAATGCCAACCAAAAATTGCCCTTCC
TGGAGGGCAAAGATAGCGACTATTTTCAATCCTATTCCCGCCTGGAGACC
CACATGAACATGCTCAGGGACTCGGTGCGCATGCAGGCTTTTCGCGATGC
CATCGTCCAGGATGGAGGGCTATTCCAGGACAAGATCGTGCTGGATGTGG
GCTGTGGCACGGGTATACTATCCCTTTTCGCCGCCGAGGCTGGTGCCAGT
AAAGTTATAGCCGTTGAATGCACCGATATAGCGGATATAGCCGAGGAGAT
AATAAGGGACAATCAGAAGGAGAATGTGGTGAAGGTGGTCAAGGGATTGG
TGGAGCAAGTGGAGCTGCCCGACGGCATTGAGAAGGTGGACATCATAGTT
TCCGAATGGATGGGAAATGCTCTGTATATGGAGGCCATGATAAACTCCGT
GCTGTTTGCCCGGGATAAGTGGCTCACGCGTGGTGGGCGAATCCTGCCCA
GCACTGGAAACCTCTGGTTAATGGGGGCCTATGATCCGCATCGGCGGACT
AATCTTAACTTTTGGTGCAACGTGGAGGGCATCGACATGGGCTGTGTGAG
GAAGCCATTCTCCCAGGAGCCCTTGGTGGAGTTTGTGCCCATCCAGCAGT
TGCTCACCGACGAATGCTTCATACACTCCACCAACCTGGCTGTGGCCCGC
AACCAGCCGGTGGAGTTTCAATCGAACTTTCAATTAAAAGTCATGCGAAC
TGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGTCGG
GAAAGTCGAACAAATCCGTAAGCCTGACCACCTCGCCGCATTCGCCATGG
ACGCACTGGGAGCAGACGGTGCTCCATCTGGATGAGCCACTGTATGTGAG
GATTAGGGATCGGGTGCGCGGTGTGCTGGCCATGACGCCCACCGGACAAG
ATGGACGTGGCATGAACTTTGATCTGCACATCAGCTTCCGTGGCGAAAGA
ACGCGAGTGGAGAGCTTCAAGAGCTTCTCCTCACCAAGAGCAAGCTTTCT
AGACCAT

BO17458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1026 CG9927-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-RA 1101 CG9927-RA 31..1053 17..1039 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13944702..13945327 1039..414 3130 100 Minus
3R 32079331 3R 13945385..13945782 414..17 1990 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:46:17 has no hits.

BO17458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:51 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:49 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:22 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..1053 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:51 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:38 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
Art6-RA 31..1053 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:38 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13944699..13945326 415..1041 99 <- Minus
3R 13945385..13945782 17..414 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:22 Download gff for BO17458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9770421..9771048 415..1041 99 <- Minus
arm_3R 9771107..9771504 17..414 100   Minus

BO17458.pep Sequence

Translation from 16 to 1057

> BO17458.pep
MSFNANQKLPFLEGKDSDYFQSYSRLETHMNMLRDSVRMQAFRDAIVQDG
GLFQDKIVLDVGCGTGILSLFAAEAGASKVIAVECTDIADIAEEIIRDNQ
KENVVKVVKGLVEQVELPDGIEKVDIIVSEWMGNALYMEAMINSVLFARD
KWLTRGGRILPSTGNLWLMGAYDPHRRTNLNFWCNVEGIDMGCVRKPFSQ
EPLVEFVPIQQLLTDECFIHSTNLAVARNQPVEFQSNFQLKVMRTGIINM
LVLYFDVLFPSGKSNKSVSLTTSPHSPWTHWEQTVLHLDEPLYVRIRDRV
RGVLAMTPTGQDGRGMNFDLHISFRGERTRVESFKSFSSPRASFLDH

BO17458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Art6-PA 341 CG9927-PA 1..341 1..341 1780 100 Plus
Art2-PB 355 CG3675-PB 18..346 4..337 705 42.8 Plus
Art2-PA 355 CG3675-PA 18..346 4..337 705 42.8 Plus
Art1-PA 376 CG6554-PA 56..373 19..337 705 40.6 Plus
Art3-PB 474 CG6563-PB 163..464 16..322 521 38.5 Plus