Clone Sequence Records
BO17459.3prime Sequence
833 bp (688 high quality bases) assembled on 2006-10-13
> BO17459.3prime
ATGGTCTAGAAAGCTTGCGACGACCTTTTTCACCACCACCCTATCTTCCT
CCGAGCCGCTCTTGCCACTGTTCTTCTCGGCGTGGTCCCAGTCGTAGATG
AGATCATTGGTGAACTTCAGATTAAACAGCAAACTCAAGAAGGTGCACCT
AATCATCCGATAATCCGGTTCCTCTTCGAAGCCCAGTTGCCGGGTGTATA
TAATATAGTTGTAGAACTCGTTTGGATATCCAGCACACAGGCTATTCGGC
AAGGTGGACAGCTTCATTTCCAAGATCATCTCCGCCTTCTGCAACTTGCT
GTTGGGCAAGAGGCCTTGCCAGGGCAGGCTACCTCGCAAAAGGTAAATGA
GGACGTAGCCCACCGATTCCAAGTCGTCCCGCCGGGACTGCACTTTACAA
CAAAGGGCGTTAACGGAGGCGTAGCGGGCGGTGCCGGCCCACTTTGTGCC
GCGCCTTTGTGGCACATGCCTGTTCTCCTTCATGTCCCAGTACCGCTTGG
ATAGGCCGAAGTCGATGAGGTGGAGCCGGTGTCTGGTCAGGCCAACGCCC
ATCAGAAAGTTTTCCGGCTTAATGTCGCGGTGCACGTAGTGATGGAGGTG
CAGGTACTCCAAACGGTCCACCATCTGGTCAGCCAGCATGAGTACAGTCT
TCATGGAGAAGCGGCGATTACACATCGTGAATAGCGTCTCCAACGAGGGG
GCCAGTAACTCCATGACCAGCACGTCGTGCCGCCTGTTTGAGAAAAACTG
GTACGTCATCGGGATTCCCATACCATGTCTCAACAGAATGTACACCGTGG
ACTCGATGCTCAAGTGCGATTGGCCGGCATTTT
BO17459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 960 | CG9962-RA | 143..957 | 833..19 | 4000 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 218..1032 | 833..19 | 4030 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646689..2647503 | 19..833 | 4030 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:21:51 has no hits.
BO17459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:48 Download gff for
BO17459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-PA | 143..960 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:27 Download gff for
BO17459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 218..1036 | 14..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:21 Download gff for
BO17459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 218..1036 | 14..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:21 Download gff for
BO17459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646685..2647503 | 14..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:27 Download gff for
BO17459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646685..2647503 | 14..833 | 99 | | Plus |
BO17459.5prime Sequence
705 bp (702 high quality bases) assembled on 2006-10-13
> BO17459.5prime
GAAGTTATCAGTCGACATGAACGACTACGAACTGGAAACCATGCTCCGCA
TAAACAGCATCATGGTGATCAGAAAACTAGGATCCGGATCCTTCGGAGAC
ATCTACGAGGCCAAGCACATGGGGTCAGGACTCCACGTAGCCCTCAAGGT
GGAGCGCAAAAATGCCGGCCAATCGCACTTGAGCATCGAGTCCACGGTGT
ACAATCTGCTGAGACATGGTATGGGAATCCCGATGACGTACCAGTTTTTC
TCAAACAGGCGGCACGACGTGCTGGTCATGGAGTTACTGGGCCCCTCGTT
GGAGACGCTATTCACGATGTGTAATCGCCGCTTCTCCATGAAGACTGTAC
TCATGCTGGCTGACCAGATGGTGGACCGTTTGGAGTACCTGCACCTCCAT
CACTACGTGCACCGCGACATTAAGCCGGAAAACTTTCTGATGGGCGTTGG
CCTGACCAGACACCGGCTCCACCTCATCGACTTCGGCCTATCCAAGCGGT
ACTGGGACATGAAGGAGAACAGGCATGTGCCACAAAGGCGCGGCACAAAG
TGGGCCGGCACCGCCCGCTACGCCTCCGTTAACGCCCTTTGTTGTAAAGT
GCAGTCCCGGCGGGACGACTTGGAATCGGTGGGCTACGTCCTCATTTACC
TTTTGCGAGGTAGCCTGCCCTGGCAAGGCCTCTTGCCCAACAGCAAGTTG
CAGAA
BO17459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 960 | CG9962-RA | 1..689 | 17..705 | 3445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 73..764 | 14..705 | 3460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646957..2647648 | 705..14 | 3460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:45:48 has no hits.
BO17459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:49 Download gff for
BO17459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:54 Download gff for
BO17459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 73..764 | 14..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:31 Download gff for
BO17459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 73..764 | 14..705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:31 Download gff for
BO17459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646957..2647648 | 14..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:54 Download gff for
BO17459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646957..2647648 | 14..705 | 100 | | Minus |
BO17459.complete Sequence
991 bp assembled on 2006-10-11
GenBank Submission: FJ634130
> BO17459.complete
GAAGTTATCAGTCGACATGAACGACTACGAACTGGAAACCATGCTCCGCA
TAAACAGCATCATGGTGATCAGAAAACTAGGATCCGGATCCTTCGGAGAC
ATCTACGAGGCCAAGCACATGGGGTCAGGACTCCACGTAGCCCTCAAGGT
GGAGCGCAAAAATGCCGGCCAATCGCACTTGAGCATCGAGTCCACGGTGT
ACAATCTGCTGAGACATGGTATGGGAATCCCGATGACGTACCAGTTTTTC
TCAAACAGGCGGCACGACGTGCTGGTCATGGAGTTACTGGGCCCCTCGTT
GGAGACGCTATTCACGATGTGTAATCGCCGCTTCTCCATGAAGACTGTAC
TCATGCTGGCTGACCAGATGGTGGACCGTTTGGAGTACCTGCACCTCCAT
CACTACGTGCACCGCGACATTAAGCCGGAAAACTTTCTGATGGGCGTTGG
CCTGACCAGACACCGGCTCCACCTCATCGACTTCGGCCTATCCAAGCGGT
ACTGGGACATGAAGGAGAACAGGCATGTGCCACAAAGGCGCGGCACAAAG
TGGGCCGGCACCGCCCGCTACGCCTCCGTTAACGCCCTTTGTTGTAAAGT
GCAGTCCCGGCGGGACGACTTGGAATCGGTGGGCTACGTCCTCATTTACC
TTTTGCGAGGTAGCCTGCCCTGGCAAGGCCTCTTGCCCAACAGCAAGTTG
CAGAAGGCGGAGATGATCTTGGAAATGAAGCTGTCCACCTTGCCGAATAG
CCTGTGTGCTGGATATCCAAACGAGTTCTACAACTATATTATATACACCC
GGCAACTGGGCTTCGAAGAGGAACCGGATTATCGGATGATTAGGTGCACC
TTCTTGAGTTTGCTGTTTAATCTGAAGTTCACCAATGATCTCATCTACGA
CTGGGACCACGCCGAGAAGAACAGTGGCAAGAGCGGCTCGGAGGAAGATA
GGGTGGTGGTGAAAAAGGTCGTCGCAAGCTTTCTAGACCAT
BO17459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 960 | CG9962-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 73..1032 | 14..973 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646689..2647648 | 973..14 | 4800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:04 has no hits.
BO17459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:33 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:27 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:08 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 76..1032 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:33 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:44 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 76..1032 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:44 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646687..2647645 | 17..975 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:08 Download gff for
BO17459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646687..2647645 | 17..975 | 99 | | Minus |
BO17459.pep Sequence
Translation from 16 to 991
> BO17459.pep
MNDYELETMLRINSIMVIRKLGSGSFGDIYEAKHMGSGLHVALKVERKNA
GQSHLSIESTVYNLLRHGMGIPMTYQFFSNRRHDVLVMELLGPSLETLFT
MCNRRFSMKTVLMLADQMVDRLEYLHLHHYVHRDIKPENFLMGVGLTRHR
LHLIDFGLSKRYWDMKENRHVPQRRGTKWAGTARYASVNALCCKVQSRRD
DLESVGYVLIYLLRGSLPWQGLLPNSKLQKAEMILEMKLSTLPNSLCAGY
PNEFYNYIIYTRQLGFEEEPDYRMIRCTFLSLLFNLKFTNDLIYDWDHAE
KNSGKSGSEEDRVVVKKVVASFLDH
BO17459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 319 | CG9962-PA | 1..319 | 1..319 | 1683 | 100 | Plus |
| dco-PD | 440 | CG2048-PD | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PC | 440 | CG2048-PC | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PB | 440 | CG2048-PB | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PA | 440 | CG2048-PA | 7..291 | 13..297 | 720 | 49.5 | Plus |
