Clone Sequence Records
BO17460.3prime Sequence
762 bp (711 high quality bases) assembled on 2006-10-13
> BO17460.3prime
ATGGTCTAGAAAGCTTGCAGTGTAATCCATGTTGGCATAGTGATGAGCCC
TAGGCAAGCTAATGAAATCGTTGGGGGTAGGTCCATTTGAGGGATTCGCA
GGTCCCTGTCCCTGATCCTGGTTTTGGCCCTGTCCTTGGATCGGCCCTTG
ACCTTGAACCTGCCCCATCTGTTGCTGCTGCAAGAGCATCTGTTGCTGAT
GGCTTAATGTTCCCGGCAGACTGGGTGCAATAAGGGGAACGGCCGTGGGG
CGATCATAATTCTGGAGTGGCTGCTTCAGCTTGTCCAAAAGAGCATGGAG
ATCCACTGTGAGTTTCGGCTGGACAATGCCCTCCGCCGCCTGGAGACCCA
CCATTTGCGAGGACAGCGCGTCCACATCCTGGCGAGCGGCGAACAGCAGC
TGATCATGGGCCGCCAGCTGAAGCTGGGCGATCTGAGCCCGAATCGCCGA
GGCAGCCACTTCCTGCTGTGCAGTGTGCAAGGAGGCGGTGATGCTGCGCA
CATGGTTGGCCGACTCCTCCAGTTGCGCCTGCGCAGCCGAGGCCACCGAC
TGAGCCTTCCTTATCTCGGTGGCCTCCAGTTGGACCCTCGCCTGGGCCAC
GTACAAATGCTGGACGAGATTGCGCAGCTCCTGGCGCCTCTGTTCAGTCT
CATCGTGCTCGTAGTAGGCATTGGGTGTTCCCTGGTTGATCCTGCCTAAG
CCACATCCGTGCGGCTGCTGATTCTGCAACTCCATCTGTTGCGGCTGCTG
CCAGTTTGATTG
BO17460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-PA | 990 | CG32846-RA | 244..987 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-RB | 1327 | CG32846-RB | 420..1163 | 762..19 | 3720 | 100 | Minus |
CG32846-RA | 1382 | CG32846-RA | 475..1218 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2950338..2951081 | 19..762 | 3720 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 18:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1056..1162 | 220..112 | 107 | 57.8 | Minus |
BO17460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:50 Download gff for
BO17460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-PA | 244..990 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:56 Download gff for
BO17460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 475..1223 | 12..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:34 Download gff for
BO17460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 475..1223 | 12..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:34 Download gff for
BO17460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2950333..2951081 | 12..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:56 Download gff for
BO17460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2950333..2951081 | 12..762 | 99 | | Plus |
BO17460.5prime Sequence
745 bp (669 high quality bases) assembled on 2006-10-13
> BO17460.5prime
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTG
BO17460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-PA | 990 | CG32846-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-RB | 1327 | CG32846-RB | 177..905 | 17..745 | 3645 | 100 | Plus |
CG32846-RA | 1382 | CG32846-RA | 232..960 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2950596..2951195 | 745..146 | 3000 | 100 | Minus |
3L | 28110227 | 3L | 2951258..2951387 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:01 has no hits.
BO17460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:50 Download gff for
BO17460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:29 Download gff for
BO17460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 226..960 | 10..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:24 Download gff for
BO17460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 226..960 | 10..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:24 Download gff for
BO17460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2951258..2951393 | 10..146 | 97 | | Minus |
3L | 2950596..2951194 | 147..745 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:29 Download gff for
BO17460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2950596..2951194 | 147..745 | 100 | <- | Minus |
arm_3L | 2951258..2951393 | 10..146 | 97 | | Minus |
BO17460.complete Sequence
1021 bp assembled on 2006-10-11
GenBank Submission: FJ634131
> BO17460.complete
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTGAAGCA
GCCACTCCAGAATTATGATCGCCCCACGGCCGTTCCCCTTATTGCACCCA
GTCTGCCGGGAACATTAAGCCATCAGCAACAGATGCTCTTGCAGCAGCAA
CAGATGGGGCAGGTTCAAGGTCAAGGGCCGATCCAAGGACAGGGCCAAAA
CCAGGATCAGGGACAGGGACCTGCGAATCCCTCAAATGGACCTACCCCCA
ACGATTTCATTAGCTTGCCTAGGGCTCATCACTATGCCAACATGGATTAC
ACTGCAAGCTTTCTAGACCAT
BO17460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-RB | 1071 | CG32846-PB | 82..1068 | 17..1003 | 4935 | 100 | Plus |
CG32846-RA | 990 | CG32846-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-RB | 1327 | CG32846-RB | 177..1163 | 17..1003 | 4935 | 100 | Plus |
CG32846-RA | 1382 | CG32846-RA | 232..1218 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2950338..2951195 | 1003..146 | 4290 | 100 | Minus |
3L | 28110227 | 3L | 2951258..2951387 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:44 has no hits.
BO17460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:34 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 1..990 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:28 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 226..1223 | 10..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:40 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 232..1218 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:34 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 226..1223 | 10..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:04 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32846-RA | 232..1218 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:04 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2950334..2951194 | 147..1005 | 99 | <- | Minus |
3L | 2951258..2951387 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:40 Download gff for
BO17460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2950334..2951194 | 147..1005 | 99 | <- | Minus |
arm_3L | 2951258..2951387 | 17..146 | 100 | | Minus |
BO17460.pep Sequence
Translation from 16 to 1021
> BO17460.pep
MTNREKIHSFQNENFEANACGNILSKHRMKRSNPEGLLDDDPNASGMGLP
PSDQNTCQMSPNLAAQSLSPAVPVSSLSDYYQSNWQQPQQMELQNQQPHG
CGLGRINQGTPNAYYEHDETEQRRQELRNLVQHLYVAQARVQLEATEIRK
AQSVASAAQAQLEESANHVRSITASLHTAQQEVAASAIRAQIAQLQLAAH
DQLLFAARQDVDALSSQMVGLQAAEGIVQPKLTVDLHALLDKLKQPLQNY
DRPTAVPLIAPSLPGTLSHQQQMLLQQQQMGQVQGQGPIQGQGQNQDQGQ
GPANPSNGPTPNDFISLPRAHHYANMDYTASFLDH
BO17460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32846-PA | 329 | CG32846-PA | 1..329 | 1..329 | 1700 | 100 | Plus |
CG32846-PB | 356 | CG32846-PB | 28..356 | 1..329 | 1700 | 100 | Plus |