Clone BO17460 Report

Search the DGRC for BO17460

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG32846-RA
Protein status:BO17460.pep: validated full length
Sequenced Size:1021

Clone Sequence Records

BO17460.3prime Sequence

762 bp (711 high quality bases) assembled on 2006-10-13

> BO17460.3prime
ATGGTCTAGAAAGCTTGCAGTGTAATCCATGTTGGCATAGTGATGAGCCC
TAGGCAAGCTAATGAAATCGTTGGGGGTAGGTCCATTTGAGGGATTCGCA
GGTCCCTGTCCCTGATCCTGGTTTTGGCCCTGTCCTTGGATCGGCCCTTG
ACCTTGAACCTGCCCCATCTGTTGCTGCTGCAAGAGCATCTGTTGCTGAT
GGCTTAATGTTCCCGGCAGACTGGGTGCAATAAGGGGAACGGCCGTGGGG
CGATCATAATTCTGGAGTGGCTGCTTCAGCTTGTCCAAAAGAGCATGGAG
ATCCACTGTGAGTTTCGGCTGGACAATGCCCTCCGCCGCCTGGAGACCCA
CCATTTGCGAGGACAGCGCGTCCACATCCTGGCGAGCGGCGAACAGCAGC
TGATCATGGGCCGCCAGCTGAAGCTGGGCGATCTGAGCCCGAATCGCCGA
GGCAGCCACTTCCTGCTGTGCAGTGTGCAAGGAGGCGGTGATGCTGCGCA
CATGGTTGGCCGACTCCTCCAGTTGCGCCTGCGCAGCCGAGGCCACCGAC
TGAGCCTTCCTTATCTCGGTGGCCTCCAGTTGGACCCTCGCCTGGGCCAC
GTACAAATGCTGGACGAGATTGCGCAGCTCCTGGCGCCTCTGTTCAGTCT
CATCGTGCTCGTAGTAGGCATTGGGTGTTCCCTGGTTGATCCTGCCTAAG
CCACATCCGTGCGGCTGCTGATTCTGCAACTCCATCTGTTGCGGCTGCTG
CCAGTTTGATTG

BO17460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-PA 990 CG32846-RA 244..987 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-RB 1327 CG32846-RB 420..1163 762..19 3720 100 Minus
CG32846-RA 1382 CG32846-RA 475..1218 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2950338..2951081 19..762 3720 100 Plus
Blast to na_te.dros performed 2015-02-02 18:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1162 220..112 107 57.8 Minus

BO17460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:50 Download gff for BO17460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-PA 244..990 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:56 Download gff for BO17460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 475..1223 12..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:34 Download gff for BO17460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 475..1223 12..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:34 Download gff for BO17460.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2950333..2951081 12..762 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:56 Download gff for BO17460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2950333..2951081 12..762 99   Plus

BO17460.5prime Sequence

745 bp (669 high quality bases) assembled on 2006-10-13

> BO17460.5prime
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTG

BO17460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-PA 990 CG32846-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-RB 1327 CG32846-RB 177..905 17..745 3645 100 Plus
CG32846-RA 1382 CG32846-RA 232..960 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2950596..2951195 745..146 3000 100 Minus
3L 28110227 3L 2951258..2951387 146..17 650 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:22:01 has no hits.

BO17460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:50 Download gff for BO17460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:29 Download gff for BO17460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 226..960 10..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:24 Download gff for BO17460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 226..960 10..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:24 Download gff for BO17460.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2951258..2951393 10..146 97   Minus
3L 2950596..2951194 147..745 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:29 Download gff for BO17460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2950596..2951194 147..745 100 <- Minus
arm_3L 2951258..2951393 10..146 97   Minus

BO17460.complete Sequence

1021 bp assembled on 2006-10-11

GenBank Submission: FJ634131

> BO17460.complete
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTGAAGCA
GCCACTCCAGAATTATGATCGCCCCACGGCCGTTCCCCTTATTGCACCCA
GTCTGCCGGGAACATTAAGCCATCAGCAACAGATGCTCTTGCAGCAGCAA
CAGATGGGGCAGGTTCAAGGTCAAGGGCCGATCCAAGGACAGGGCCAAAA
CCAGGATCAGGGACAGGGACCTGCGAATCCCTCAAATGGACCTACCCCCA
ACGATTTCATTAGCTTGCCTAGGGCTCATCACTATGCCAACATGGATTAC
ACTGCAAGCTTTCTAGACCAT

BO17460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-RB 1071 CG32846-PB 82..1068 17..1003 4935 100 Plus
CG32846-RA 990 CG32846-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-RB 1327 CG32846-RB 177..1163 17..1003 4935 100 Plus
CG32846-RA 1382 CG32846-RA 232..1218 17..1003 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2950338..2951195 1003..146 4290 100 Minus
3L 28110227 3L 2951258..2951387 146..17 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:55:44 has no hits.

BO17460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:34 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 1..990 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:28 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 226..1223 10..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:40 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 232..1218 17..1005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:34 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 226..1223 10..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:04 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
CG32846-RA 232..1218 17..1005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:04 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2950334..2951194 147..1005 99 <- Minus
3L 2951258..2951387 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:40 Download gff for BO17460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2950334..2951194 147..1005 99 <- Minus
arm_3L 2951258..2951387 17..146 100   Minus

BO17460.pep Sequence

Translation from 16 to 1021

> BO17460.pep
MTNREKIHSFQNENFEANACGNILSKHRMKRSNPEGLLDDDPNASGMGLP
PSDQNTCQMSPNLAAQSLSPAVPVSSLSDYYQSNWQQPQQMELQNQQPHG
CGLGRINQGTPNAYYEHDETEQRRQELRNLVQHLYVAQARVQLEATEIRK
AQSVASAAQAQLEESANHVRSITASLHTAQQEVAASAIRAQIAQLQLAAH
DQLLFAARQDVDALSSQMVGLQAAEGIVQPKLTVDLHALLDKLKQPLQNY
DRPTAVPLIAPSLPGTLSHQQQMLLQQQQMGQVQGQGPIQGQGQNQDQGQ
GPANPSNGPTPNDFISLPRAHHYANMDYTASFLDH

BO17460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32846-PA 329 CG32846-PA 1..329 1..329 1700 100 Plus
CG32846-PB 356 CG32846-PB 28..356 1..329 1700 100 Plus