Clone Sequence Records
BO17462.3prime Sequence
803 bp (749 high quality bases) assembled on 2006-10-13
> BO17462.3prime
ATGGTCTAGAAAGCTTGCGACCTTTGGTATTGAAGATGTCTGGGGAAGAT
TACTGCTGGTCTCCACCAGCCAAATGTGCTCCTCTCGTTGCCTTCTTGAG
CCATTTTCTCGACGCACCCGCCAAATTAGAAACACCAATACCACGATTAG
GAAGCAGAATATTACTATAACCAAGCTGAAAACATACGCTTGGGGTGTTT
CACAGTAAGGAAACTTCCTAGCCCACAATGCGTCCTGGCAAATGTTCTGG
TTCTCGCCTTTCAGTCTGTGCTCCGCCGGGCAGTCGTAGTAGATACGGGT
GCCATTGGCTACCCTTGATCCTACAGTGAGGATTGCATCTGTGAAGTGCT
TAACCATAACGTTTGGCAGTTGGGGAACCACGCACTCCCCGTTCTCCTGA
AGAGGATTTGGTCGTGACGCCTTCCTTGTTACAGGAACAGTGGGAGTTAT
CCTATGGATACTACTTTCCGTAGTTGTACTTGTCGTTGAACTGACTGTAG
TCGTTGGTATGGTAACGCCCTCGCAAAGGGACTCCAGCTCATCGTCTCCA
TCTCGGCAGTCACGGATGCCATCACACAATTTGGAATAGGTCATGCATTG
GCCAGAGGAGCAGTACATTTCCCAGTTGTCGCAGTTAGCCTGCTGCATCT
GCGCCCGGCACAGCCAACCCTGCTCATCCGAACCATCCACGCAGTCCTGG
ACGCCATCGCAAACCGCTGTGCTGGCTATGCACGCACCGTAGCTGCAGCG
AAATGCATAACCCGGACACCAGACCTTCTCACACATGGCGACCGTCTCAT
CGG
BO17462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-PA | 960 | CG6553-RA | 173..957 | 803..19 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-RA | 1145 | CG6553-RA | 199..983 | 803..19 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13854975..13855580 | 198..803 | 3030 | 100 | Plus |
| 2R | 25286936 | 2R | 13854740..13854918 | 19..197 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:38:39 has no hits.
BO17462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:51 Download gff for
BO17462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-PA | 173..960 | 18..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:06 Download gff for
BO17462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 199..983 | 19..803 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:12 Download gff for
BO17462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 199..983 | 19..803 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:12 Download gff for
BO17462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13854740..13854918 | 19..197 | 100 | <- | Plus |
| 2R | 13854975..13855580 | 198..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:06 Download gff for
BO17462.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9742245..9742423 | 19..197 | 100 | <- | Plus |
| arm_2R | 9742480..9743085 | 198..803 | 100 | | Plus |
BO17462.5prime Sequence
820 bp (728 high quality bases) assembled on 2006-10-13
> BO17462.5prime
GAAGTTATCAGTCGACATGTTCGGAGCGCATCAGAATCTCTCAATTCAGC
TGGTGATTTTTCTCTCCTTAGCCGTCACCATTTGCTTGGGATCCCAAAAT
GCCACAAGCTGCGGGCATCGCTGTGGAGGAGGCGACTGTATCCAACTGGA
CCAGCTGTGCGATGGGAGCGCCAACTGCTTGGATGGTTCCGATGAGACGG
TCGCCATGTGTGAGAAGGTCTGGTGTCCGGGTTATGCATTTCGCTGCAGC
TACGGTGCGTGCATAGCCAGCACAGCGGTTTGCGATGGCGTCCAGGACTG
CGTGGATGGTTCGGATGAGCAGGGTTGGCTGTGCCGGGCGCAGATGCAGC
AGGCTAACTGCGACAACTGGGAAATGTACTGCTCCTCTGGCCAATGCATG
ACCTATTCCAAATTGTGTGATGGCATCCGTGACTGCCGAGATGGAGACGA
TGAGCTGGAGTCCCTTTGCGAGGGCGTTACCATACCAACGACTACAGTCA
GTTCAACGACAAGTACAACTACGGAAAGTAGTATCCATAGGATAACTCCC
ACTGTTCCTGTAACAAGGAAGGCGTCACGACCAAATCCTCTTCAGGAGAA
CGGGGAGTGCGTGGTTCCCCAACTGCCAAACGTTATGGTTAAGCACTTCA
CAGATGCAATCCTCACTGTAGGATCAAGGGTAGCCAATGGCACCCGTATC
TACTACGACTGCCCGGCGGAGCACAGACTGAAAAGCGAGAACCAGAACAT
TTGCCAGGACGCATTGTGGGCTAGGAAGTTTCCTTACTGTGAAACACCCC
CAGCGTATGTTTTCAGCTTG
BO17462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-PA | 960 | CG6553-RA | 1..804 | 17..820 | 3970 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-RA | 1145 | CG6553-RA | 27..830 | 17..820 | 3990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13854975..13855752 | 794..17 | 3875 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:28:15 has no hits.
BO17462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:51 Download gff for
BO17462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:29 Download gff for
BO17462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 25..830 | 14..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:58 Download gff for
BO17462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 25..830 | 14..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:58 Download gff for
BO17462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13854893..13854918 | 795..820 | 96 | <- | Minus |
| 2R | 13854975..13855754 | 14..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:29 Download gff for
BO17462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9742398..9742423 | 795..820 | 96 | <- | Minus |
| arm_2R | 9742480..9743259 | 14..794 | 99 | | Minus |
BO17462.complete Sequence
991 bp assembled on 2007-10-17
GenBank Submission: FJ634132
> BO17462.complete
GAAGTTATCAGTCGACATGTTCGGAGCGCATCAGAATCTCTCAATTCAGC
TGGTGATTTTTCTCTCCTTAGCCGTCACCATTTGCTTGGGATCCCAAAAT
GCCACAAGCTGCGGGCATCGCTGTGGAGGAGGCGACTGTATCCAACTGGA
CCAGCTGTGCGATGGGAGCGCCAACTGCTTGGATGGTTCCGATGAGACGG
TCGCCATGTGTGAGAAGGTCTGGTGTCCGGGTTATGCATTTCGCTGCAGC
TACGGTGCGTGCATAGCCAGCACAGCGGTTTGCGATGGCGTCCAGGACTG
CGTGGATGGTTCGGATGAGCAGGGTTGGCTGTGCCGGGCGCAGATGCAGC
AGGCTAACTGCGACAACTGGGAAATGTACTGCTCCTCTGGCCAATGCATG
ACCTATTCCAAATTGTGTGATGGCATCCGTGACTGCCGAGATGGAGACGA
TGAGCTGGAGTCCCTTTGCGAGGGCGTTACCATACCAACGACTACAGTCA
GTTCAACGACAAGTACAACTACGGAAAGTAGTATCCATAGGATAACTCCC
ACTGTTCCTGTAACAAGGAAGGCGTCACGACCAAATCCTCTTCAGGAGAA
CGGGGAGTGCGTGGTTCCCCAACTGCCAAACGTTATGGTTAAGCACTTCA
CAGATGCAATCCTCACTGTAGGATCAAGGGTAGCCAATGGCACCCGTATC
TACTACGACTGCCCGGCGGAGCACAGACTGAAAGGCGAGAACCAGAACAT
TTGCCAGGACGCATTGTGGGCTAGGAAGTTTCCTTACTGTGAAACACCCC
AAGCGTATGTTTTCAGCTTGGTTATAGTAATATTCTGCTTCCTAATCGTG
GTATTGGTGTTTCTAATTTGGCGGGTGCGTCGAGAAAATGGCTCAAGAAG
GCAACGAGAGGAGCACATTTGGCTGGTGGAGACCAGCAGTAATCTTCCCC
AGACATCTTCAATACCAAAGGTCGCAAGCTTTCTAGACCAT
BO17462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-RA | 960 | CG6553-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-RA | 1145 | CG6553-RA | 27..983 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13854975..13855752 | 794..17 | 3890 | 100 | Minus |
| 2R | 25286936 | 2R | 13854740..13854918 | 973..795 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:24:36 has no hits.
BO17462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:29 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 1..960 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:12 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 1..960 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:23 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 32..983 | 22..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:03 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 6..957 | 22..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:50 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6553-RA | 32..983 | 22..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:50 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13854738..13854918 | 795..975 | 98 | <- | Minus |
| 2R | 13854975..13855747 | 22..794 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:23 Download gff for
BO17462.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9742243..9742423 | 795..975 | 98 | <- | Minus |
| arm_2R | 9742480..9743252 | 22..794 | 100 | | Minus |
BO17462.pep Sequence
Translation from 16 to 991
> BO17462.pep
MFGAHQNLSIQLVIFLSLAVTICLGSQNATSCGHRCGGGDCIQLDQLCDG
SANCLDGSDETVAMCEKVWCPGYAFRCSYGACIASTAVCDGVQDCVDGSD
EQGWLCRAQMQQANCDNWEMYCSSGQCMTYSKLCDGIRDCRDGDDELESL
CEGVTIPTTTVSSTTSTTTESSIHRITPTVPVTRKASRPNPLQENGECVV
PQLPNVMVKHFTDAILTVGSRVANGTRIYYDCPAEHRLKGENQNICQDAL
WARKFPYCETPQAYVFSLVIVIFCFLIVVLVFLIWRVRRENGSRRQREEH
IWLVETSSNLPQTSSIPKVASFLDH
BO17462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6553-PA | 319 | CG6553-PA | 1..319 | 1..319 | 1738 | 100 | Plus |
| modSP-PA | 628 | CG31217-PA | 1..289 | 10..260 | 274 | 30.7 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2596..2730 | 23..146 | 249 | 41.2 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2622..2756 | 23..146 | 249 | 41.2 | Plus |
| LpR1-PR | 868 | CG31094-PR | 8..143 | 12..146 | 245 | 39.7 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3758..3866 | 36..147 | 239 | 38.4 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3784..3892 | 36..147 | 239 | 38.4 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3674..3828 | 27..151 | 205 | 30.4 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3700..3854 | 27..151 | 205 | 30.4 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2820..2945 | 30..148 | 196 | 37.8 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2846..2971 | 30..148 | 196 | 37.8 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2705..2821 | 35..152 | 194 | 39.3 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2731..2847 | 35..152 | 194 | 39.3 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3594..3708 | 31..147 | 190 | 35.5 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3620..3734 | 31..147 | 190 | 35.5 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3542..3669 | 23..147 | 188 | 33.1 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2903..3032 | 23..146 | 188 | 35.6 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2929..3058 | 23..146 | 188 | 35.6 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3568..3695 | 23..147 | 188 | 33.1 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2872..2994 | 39..151 | 186 | 37.1 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2898..3020 | 39..151 | 186 | 37.1 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2748..2852 | 36..146 | 184 | 39.8 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2774..2878 | 36..146 | 184 | 39.8 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3478..3594 | 34..155 | 172 | 33.1 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3504..3620 | 34..155 | 172 | 33.1 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2790..2900 | 35..153 | 171 | 38.3 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2816..2926 | 35..153 | 171 | 38.3 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 2963..3033 | 34..102 | 163 | 47.9 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 2989..3059 | 34..102 | 163 | 47.9 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3643..3751 | 35..151 | 162 | 34.2 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3669..3777 | 35..151 | 162 | 34.2 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 1043..1143 | 39..146 | 160 | 36.4 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 3445..3548 | 41..146 | 160 | 34.2 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 1069..1169 | 39..146 | 160 | 36.4 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 3471..3574 | 41..146 | 160 | 34.2 | Plus |
| LRP1-PG | 4730 | CG33087-PG | 1003..1109 | 39..152 | 155 | 34.8 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 61..202 | 4..148 | 155 | 30.6 | Plus |
| LRP1-PF | 4752 | CG33087-PF | 1029..1135 | 39..152 | 155 | 34.8 | Plus |
