Clone BO17463 Report

Search the DGRC for BO17463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG9308-RA
Protein status:BO17463.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO17463.3prime Sequence

641 bp (641 high quality bases) assembled on 2006-10-13

> BO17463.3prime
ATGGTCTAGAAAGCTTGCAACCACGCGCTTGACTTCGAAGAAATGCTTGA
GGTAGTATACCTCCAGAACGGCCGTAATGATCAGCATCATTGGTCCAAAT
ATAGACCACGCCAGGACTCGCAGTTCCACCATATCGCTGACCTCCAAGTG
ACCGCGATAGCGAAAGTGCATGTACTCCTGCTCCATTTTCACGGCTCCCA
GTTTGGCGGAGAGTTGGTTGATCATCGATTGGACCGTCGCCTGCTCGATG
ACGTCGTCAACTCGCTTCGAGGAGTCCATGTAGAACTCAATGGCCCTGGC
AACGTGAAATTGGAACATTAGGATCTTGGGCGTCATCGTGGACATCTTAT
TGTCGAAGCACAATTGGTACCGTCCCTCTTTCATGGCCGTAAAGGTGAAG
CTGCCCATGGTGTCCTGCTTGGAGTGGTGCAGGCGATCGTCGTCTGGTCC
AGCAATCTCCACGCCCACATCCTTGAAGCCACCTTCCATTACCTCGAAGG
ACACGGTCACCTTGTCGCTGACATTGGCATGATCGTAGAAGCACATCGTC
TCGTGGGCATCCAGGGTAACGATGAAGCCACAAGCCGCTTGAAAAAGCAC
TAACACTAAGACAATAGCTGACAGCATGTCGACTGATAACT

BO17463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-PA 612 CG9308-RA 1..609 627..19 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-RA 823 CG9308-RA 78..686 627..19 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22034921..22035529 627..19 3045 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:19:34 has no hits.

BO17463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:53 Download gff for BO17463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-PA 1..612 16..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:52 Download gff for BO17463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 12..627 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:27 Download gff for BO17463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 12..627 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:27 Download gff for BO17463.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22034921..22035535 12..627 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:52 Download gff for BO17463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17922426..17923040 12..627 99   Minus

BO17463.5prime Sequence

641 bp (641 high quality bases) assembled on 2006-10-13

> BO17463.5prime
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTGCAAGCTTTCTAGACC

BO17463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-PA 612 CG9308-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-RA 823 CG9308-RA 78..686 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22034921..22035529 17..625 3045 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:19:46 has no hits.

BO17463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:53 Download gff for BO17463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-PA 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:55 Download gff for BO17463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:28 Download gff for BO17463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:28 Download gff for BO17463.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22034921..22035535 17..632 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:55 Download gff for BO17463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17922426..17923040 17..632 99   Plus

BO17463.complete Sequence

643 bp assembled on 2006-10-11

GenBank Submission: FJ634133

> BO17463.complete
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTGCAAGCTTTCTAGACCAT

BO17463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-RA 612 CG9308-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-RA 823 CG9308-RA 78..686 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22034921..22035529 17..625 3045 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:24:40 has no hits.

BO17463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:36 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:30 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:15 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..686 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:37 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..692 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:56 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
CG9308-RA 78..686 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:56 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22034921..22035529 17..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:15 Download gff for BO17463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17922426..17923034 17..627 99   Plus

BO17463.pep Sequence

Translation from 16 to 643

> BO17463.pep
MLSAIVLVLVLFQAACGFIVTLDAHETMCFYDHANVSDKVTVSFEVMEGG
FKDVGVEIAGPDDDRLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTP
KILMFQFHVARAIEFYMDSSKRVDDVIEQATVQSMINQLSAKLGAVKMEQ
EYMHFRYRGHLEVSDMVELRVLAWSIFGPMMLIITAVLEVYYLKHFFEVK
RVVASFLDH

BO17463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9308-PA 203 CG9308-PA 1..203 1..203 1043 100 Plus
CHOp24-PB 208 CG3564-PB 15..208 8..203 409 40.8 Plus
CHOp24-PA 208 CG3564-PA 15..208 8..203 409 40.8 Plus
eca-PA 216 CG33104-PA 7..216 4..203 149 23.3 Plus
p24-1-PB 210 CG1967-PB 18..197 14..197 148 24.9 Plus