Clone Sequence Records
BO17463.3prime Sequence
641 bp (641 high quality bases) assembled on 2006-10-13
> BO17463.3prime
ATGGTCTAGAAAGCTTGCAACCACGCGCTTGACTTCGAAGAAATGCTTGA
GGTAGTATACCTCCAGAACGGCCGTAATGATCAGCATCATTGGTCCAAAT
ATAGACCACGCCAGGACTCGCAGTTCCACCATATCGCTGACCTCCAAGTG
ACCGCGATAGCGAAAGTGCATGTACTCCTGCTCCATTTTCACGGCTCCCA
GTTTGGCGGAGAGTTGGTTGATCATCGATTGGACCGTCGCCTGCTCGATG
ACGTCGTCAACTCGCTTCGAGGAGTCCATGTAGAACTCAATGGCCCTGGC
AACGTGAAATTGGAACATTAGGATCTTGGGCGTCATCGTGGACATCTTAT
TGTCGAAGCACAATTGGTACCGTCCCTCTTTCATGGCCGTAAAGGTGAAG
CTGCCCATGGTGTCCTGCTTGGAGTGGTGCAGGCGATCGTCGTCTGGTCC
AGCAATCTCCACGCCCACATCCTTGAAGCCACCTTCCATTACCTCGAAGG
ACACGGTCACCTTGTCGCTGACATTGGCATGATCGTAGAAGCACATCGTC
TCGTGGGCATCCAGGGTAACGATGAAGCCACAAGCCGCTTGAAAAAGCAC
TAACACTAAGACAATAGCTGACAGCATGTCGACTGATAACT
BO17463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-PA | 612 | CG9308-RA | 1..609 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-RA | 823 | CG9308-RA | 78..686 | 627..19 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22034921..22035529 | 627..19 | 3045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:19:34 has no hits.
BO17463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:53 Download gff for
BO17463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-PA | 1..612 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:52 Download gff for
BO17463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 12..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:27 Download gff for
BO17463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 12..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:27 Download gff for
BO17463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22034921..22035535 | 12..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:52 Download gff for
BO17463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17922426..17923040 | 12..627 | 99 | | Minus |
BO17463.5prime Sequence
641 bp (641 high quality bases) assembled on 2006-10-13
> BO17463.5prime
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTGCAAGCTTTCTAGACC
BO17463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-PA | 612 | CG9308-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-RA | 823 | CG9308-RA | 78..686 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22034921..22035529 | 17..625 | 3045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:19:46 has no hits.
BO17463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:53 Download gff for
BO17463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-PA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:55 Download gff for
BO17463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:28 Download gff for
BO17463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 17..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:28 Download gff for
BO17463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22034921..22035535 | 17..632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:55 Download gff for
BO17463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17922426..17923040 | 17..632 | 99 | | Plus |
BO17463.complete Sequence
643 bp assembled on 2006-10-11
GenBank Submission: FJ634133
> BO17463.complete
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTGCAAGCTTTCTAGACCAT
BO17463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-RA | 612 | CG9308-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-RA | 823 | CG9308-RA | 78..686 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22034921..22035529 | 17..625 | 3045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:24:40 has no hits.
BO17463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:36 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:30 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:15 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..686 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:37 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..692 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:56 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9308-RA | 78..686 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:56 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22034921..22035529 | 17..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:15 Download gff for
BO17463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17922426..17923034 | 17..627 | 99 | | Plus |
BO17463.pep Sequence
Translation from 16 to 643
> BO17463.pep
MLSAIVLVLVLFQAACGFIVTLDAHETMCFYDHANVSDKVTVSFEVMEGG
FKDVGVEIAGPDDDRLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTP
KILMFQFHVARAIEFYMDSSKRVDDVIEQATVQSMINQLSAKLGAVKMEQ
EYMHFRYRGHLEVSDMVELRVLAWSIFGPMMLIITAVLEVYYLKHFFEVK
RVVASFLDH
BO17463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9308-PA | 203 | CG9308-PA | 1..203 | 1..203 | 1043 | 100 | Plus |
CHOp24-PB | 208 | CG3564-PB | 15..208 | 8..203 | 409 | 40.8 | Plus |
CHOp24-PA | 208 | CG3564-PA | 15..208 | 8..203 | 409 | 40.8 | Plus |
eca-PA | 216 | CG33104-PA | 7..216 | 4..203 | 149 | 23.3 | Plus |
p24-1-PB | 210 | CG1967-PB | 18..197 | 14..197 | 148 | 24.9 | Plus |