Clone Sequence Records
BO17464.3prime Sequence
792 bp (731 high quality bases) assembled on 2006-10-13
> BO17464.3prime
ATGGTCTAGAAAGCTTGCGAATTTAGTTGCGATGTGTGGTTTGGCGGGAA
AGTAGTTACCAATGATTTTACGTGCCACAGCTGCGATTTCCTCATGTTCG
CTGCTTTGGAGCATCCTGATATTATTTAAAGCTCCACTCCATTCGATGAT
GCCGGACACCTCTGCCGAGAAAGATGGATCCACATCTAGCATAGTGCTCA
GTATATCGAGCACATTAGATAAGATGTCTCTTTCCTGGCAGAAGAGTAAA
TTGCAGAACTCTGGAATTACTCCCTGTCTCATAAGATAGCACAGGAGATT
CTTGTCCTTATCGATGGCCAACGTGGTGATTGTCAAGGCAGCTGCAGATT
TTAATGAAATCGCATCAGCTTTTAAGCACTCCAGTATTTTATGCAGGAGA
CCTGCATTCATAATGGCGTGCCTTTGGAATATATTTCCGTCAGCGATGTT
TAGCAAAAGCTTAAGAACTTGACAGCGAATATCTGGATCACTATTGGACA
TCAGAGCCGATAAATGGGGCAAAAGGTTATTGTTAAGCAACTCTTGAATC
TGCTCTTCGGATCCAGTTGCTATATTTATTAGGGCTTGCAGTGCGGCGTT
CTGAACCGTAACGTTCGGATGCTCCAGCAAGTATATGATCCTGGGTACAA
CTTCAAAATCAAGTAACATTTGAATCGTTTCATTTCCATGGGCCAAATTA
CGCACTGCCATAAGTGCGTCCTCTAAAACGTTGGCCTCTGGGTTGTACAA
TACTATGTTCAATGGCTGAATGATCTCAGCTGCATTATCAGG
BO17464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10478-PA | 1329 | CG10478-RA | 553..1326 | 792..19 | 3845 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 623..1396 | 792..19 | 3855 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009559..6010332 | 19..792 | 3855 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:02 has no hits.
BO17464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:54 Download gff for
BO17464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-PA | 553..1329 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:30 Download gff for
BO17464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 623..1399 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:06 Download gff for
BO17464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 623..1399 | 15..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:06 Download gff for
BO17464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009556..6010332 | 15..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:30 Download gff for
BO17464.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002656..6003432 | 15..792 | 99 | | Plus |
BO17464.5prime Sequence
756 bp (685 high quality bases) assembled on 2006-10-13
> BO17464.5prime
GAAGTTATCAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAG
GGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAG
GCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAA
ATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCA
ATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAA
ATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATC
GGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTC
GCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGT
TTGGGGAATCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAG
ACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTT
GCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATA
AGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATT
GAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTA
TGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTT
GATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGT
TACGGT
BO17464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10478-PA | 1329 | CG10478-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..810 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6010145..6010584 | 756..317 | 2200 | 100 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 316..17 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:09:18 has no hits.
BO17464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:55 Download gff for
BO17464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:07 Download gff for
BO17464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..810 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:05 Download gff for
BO17464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..810 | 17..756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:05 Download gff for
BO17464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6010145..6010584 | 317..756 | 100 | <- | Minus |
| 3L | 6010652..6010951 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:07 Download gff for
BO17464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6003245..6003684 | 317..756 | 100 | <- | Minus |
| arm_3L | 6003752..6004051 | 17..316 | 100 | | Minus |
BO17464.complete Sequence
1360 bp assembled on 2006-10-11
GenBank Submission: FJ634134
> BO17464.complete
GAAGTTATCAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAG
GGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAG
GCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAA
ATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCA
ATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAA
ATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATC
GGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTC
GCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGT
TTGGGGAATCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAG
ACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTT
GCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATA
AGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATT
GAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTA
TGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTT
GATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGT
TACGGTTCAGAACGCCGCACTGCAAGCCCTAATAAATATAGCAACTGGAT
CCGAAGAGCAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCCCATTTA
TCGGCTCTGATGTCCAATAGTGATCCAGATATTCGCTGTCAAGTTCTTAA
GCTTTTGCTAAACATCGCTGACGGAAATATATTCCAAAGGCACGCCATTA
TGAATGCAGGTCTCCTGCATAAAATACTGGAGTGCTTAAAAGCTGATGCG
ATTTCATTAAAATCTGCAGCTGCCTTGACAATCACCACGTTGGCCATCGA
TAAGGACAAGAATCTCCTGTGCTATCTTATGAGACAGGGAGTAATTCCAG
AGTTCTGCAATTTACTCTTCTGCCAGGAAAGAGACATCTTATCTAATGTG
CTCGATATACTGAGCACTATGCTAGATGTGGATCCATCTTTCTCGGCAGA
GGTGTCCGGCATCATCGAATGGAGTGGAGCTTTAAATAATATCAGGATGC
TCCAAAGCAGCGAACATGAGGAAATCGCAGCTGTGGCACGTAAAATCATT
GGTAACTACTTTCCCGCCAAACCACACATCGCAACTAAATTCGCAAGCTT
TCTAGACCAT
BO17464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1329 | CG10478-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..1396 | 17..1342 | 6630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009559..6010584 | 1342..317 | 5130 | 100 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 316..17 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:04 has no hits.
BO17464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:37 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1329 | 17..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:32 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1329 | 17..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:45 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1396 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:38 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1329 | 17..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:06 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1396 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:06 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009557..6010584 | 317..1344 | 99 | <- | Minus |
| 3L | 6010652..6010951 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:45 Download gff for
BO17464.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002657..6003684 | 317..1344 | 99 | <- | Minus |
| arm_3L | 6003752..6004051 | 17..316 | 100 | | Minus |
BO17464.pep Sequence
Translation from 16 to 1360
> BO17464.pep
MQKRKRRFLKKGQNLMMLRTLRLEKAKKAELQKELTIYNALTKCKLTSSE
VVPDVNKLLKSNTIGNLVESLGHGNKNKIRADAADALAHIASGSSEHSNL
IAKAGAVPRLIRLLQSPDPEVCEKGILSLGNLLHFAPNLRDYIIRHGLMQ
KLMSIIQDKSTCTLMLSHVTWVLRKLCISSQPSPPDNAAEIIQALNIVLY
NPEANVLEDALMAVRNLAHGNETIQMLLDFEVVPRIIYLLEHPNVTVQNA
ALQALINIATGSEEQIQELLNNNLLPHLSALMSNSDPDIRCQVLKLLLNI
ADGNIFQRHAIMNAGLLHKILECLKADAISLKSAAALTITTLAIDKDKNL
LCYLMRQGVIPEFCNLLFCQERDILSNVLDILSTMLDVDPSFSAEVSGII
EWSGALNNIRMLQSSEHEEIAAVARKIIGNYFPAKPHIATKFASFLDH
BO17464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-PA | 442 | CG10478-PA | 1..442 | 1..442 | 2221 | 100 | Plus |
| Kap-alpha3-PD | 514 | CG9423-PD | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PC | 514 | CG9423-PC | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PB | 514 | CG9423-PB | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PA | 514 | CG9423-PA | 69..480 | 22..432 | 694 | 39.5 | Plus |
