Clone Sequence Records
BO17466.3prime Sequence
709 bp (633 high quality bases) assembled on 2006-10-13
> BO17466.3prime
ATGGTCTAGAAAGCTTGCGCACTGCTCGGAGTCCATTTTGAACAGCGGCT
CCGTCATGTTGTATTTTATAAGATCCTCGACGATACCAGTGATTCGCCGC
TTGAAAATTGGTAAAGTCCGGGCGTTGAGCATTTCGTATTCTTCAATGAG
CTCCTTGTACTTGGGTTCATCAGAGGATGTCGAAATACTTTGGATGGCCT
CGGAAACAGTATCGATATCAATCACTTCGTTGGCATTGGAAATGAAAAAG
GGTAGCGAAAATGCTCCCATTATCAAGCCGTAAACGCCGTACTGTTGCAA
TTGCCGATTGAAGACGCTGCGCGGATATATGCCCTCGAGGGAAAGATTGC
AGGACTTCAATTTCTGGTCCATCGTGTTGTAGTAAGCATCCATAAAGTCG
GGGAAGTGCTCGTCCCGCAATCGTTTCTCCGTGCAGGCAAACAGGTAATG
GACTATGTCCAGTACCGGCGGTGCATAGCGAGACATTTGAAAGTCGATCA
GCTTGGCCTCCACAGGTTGATCAGAATTAGGCTCATGTCTATAGAGAATA
TTGTTATTCCAGAAGTCACCGTGACAGATAACAGCATGTGGCGCCTGCGC
CTTTCCATCCACACAGTAAAGAGCCAAGGATTTCAGCTGGTTTTCACACA
ATTGCAGGACTTCCTGGACCGCGGCCACTTGGTCGCCATCGGATTCTTTC
AGGATGATT
BO17466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-PA | 1293 | CG13813-RA | 600..1290 | 709..19 | 3455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-RA | 1527 | CG13813-RA | 651..1341 | 709..19 | 3455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20232555..20233069 | 533..19 | 2575 | 100 | Minus |
3L | 28110227 | 3L | 20232319..20232496 | 709..532 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:47:10 has no hits.
BO17466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:57 Download gff for
BO17466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-PA | 600..1293 | 15..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:58 Download gff for
BO17466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 651..1355 | 5..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:39 Download gff for
BO17466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 651..1355 | 5..709 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:39 Download gff for
BO17466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20232319..20232496 | 532..709 | 100 | -> | Minus |
3L | 20232557..20233083 | 5..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:58 Download gff for
BO17466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20225419..20225596 | 532..709 | 100 | -> | Minus |
arm_3L | 20225657..20226183 | 5..531 | 99 | | Minus |
BO17466.5prime Sequence
606 bp (569 high quality bases) assembled on 2006-10-13
> BO17466.5prime
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCG
BO17466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-PA | 1293 | CG13813-RA | 1..590 | 17..606 | 2950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-RA | 1527 | CG13813-RA | 52..641 | 17..606 | 2950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20231720..20232309 | 17..606 | 2950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:56:34 has no hits.
BO17466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:58 Download gff for
BO17466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-PA | 1..590 | 17..606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:24 Download gff for
BO17466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 52..641 | 17..606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:58 Download gff for
BO17466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 52..641 | 17..606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:58 Download gff for
BO17466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20231720..20232309 | 17..606 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:24 Download gff for
BO17466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20224820..20225409 | 17..606 | 100 | | Plus |
BO17466.complete Sequence
1324 bp assembled on 2008-08-14
GenBank Submission: FJ634135
> BO17466.complete
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCGCAAGGCGAGAATCATCCTGAAAGAATCCGATGGCGACCAAGTGG
CCGCGGTCCAGGAAGTCCTGCAATTGTGTGAAAACCAGCTGAAATCCTTG
GCTCTTTACTGTGTGGATGGAAAGGCGCAGGCGCCACATGCTGTTATCTG
TCACGGTGACTTCTGGAATAACAATATTCTCTATAGACATGAGCCTAATT
CTGATCAACCTGTGGAGGCCAAGCTGATCGACTTTCAAATGTCTCGCTAT
GCACCGCCGGTACTGGACATAGTCCATTACCTGTTTGCCTGCACGGAGAA
ACGATTGCGGGACGAGCACTTCCCCGACTTTATGGATGCTTACTACAACA
CGATGGACCAGAAATTGAAGTCCTGCAATCTTTCCCTCGAGGGCATATAT
CCGCGCAGCGTCTTCAATCGGCAATTGCAACAGTACGGCGTTTACGGCTT
GATAATGGGAGCATTTTCGCTACCCTTTTTCATTTCCAATGCCAACGAAG
TGATTGATATCGATACTGTTTCCGAGGCCATCCAAAGTATTTCGACATCC
TCTGATGAACCCAAGTACAAGGAGCTCATTGAAGAATACGAAATGCTCAA
CGCCCGGACTTTACCAATTTTCAAGCGGCGAATCACTGGTATCGTCGAGG
ATCTTATAAAATACAACATGACGGAGCCGCTGTTCAAAATGGACTCCGAG
CAGTGCGCAAGCTTTCTAGACCAT
BO17466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-RA | 1293 | CG13813-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-RA | 1527 | CG13813-RA | 52..1341 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20231720..20232496 | 17..793 | 3885 | 100 | Plus |
3L | 28110227 | 3L | 20232555..20233069 | 792..1306 | 2575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:38 has no hits.
BO17466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:33 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 1..1293 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:24 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 1..1293 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:01 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 52..1341 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:33 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 1..1293 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:02 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13813-RA | 52..1341 | 17..1308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:02 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20231720..20232496 | 17..793 | 100 | -> | Plus |
3L | 20232557..20233069 | 794..1308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:01 Download gff for
BO17466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20224820..20225596 | 17..793 | 100 | -> | Plus |
arm_3L | 20225657..20226169 | 794..1308 | 99 | | Plus |
BO17466.pep Sequence
Translation from 16 to 1324
> BO17466.pep
MSDNELSYAVTRVLLELYQRHGIPMVSQPMAGVGENAYGQVLRVSWPTIV
DAATVVVKMAPRNEARRSHMHVVDYYAREVFMYQKVFPVFRALSPDRNTF
TVAPALQANDLKAPDEFLIFEDLSESGFRPNSRCIMPTYDIVVCSLKALA
ELHACSFILQQTDPLQFKQLVEFVEKDNLFTSDIEEVTIEFGKAQLRKAR
IILKESDGDQVAAVQEVLQLCENQLKSLALYCVDGKAQAPHAVICHGDFW
NNNILYRHEPNSDQPVEAKLIDFQMSRYAPPVLDIVHYLFACTEKRLRDE
HFPDFMDAYYNTMDQKLKSCNLSLEGIYPRSVFNRQLQQYGVYGLIMGAF
SLPFFISNANEVIDIDTVSEAIQSISTSSDEPKYKELIEEYEMLNARTLP
IFKRRITGIVEDLIKYNMTEPLFKMDSEQCASFLDH
BO17466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13813-PA | 430 | CG13813-PA | 1..430 | 1..430 | 2231 | 100 | Plus |
CG1561-PB | 635 | CG1561-PB | 258..633 | 34..417 | 372 | 26.9 | Plus |
CG9259-PC | 422 | CG9259-PC | 40..355 | 24..346 | 308 | 28.4 | Plus |
CG9259-PB | 422 | CG9259-PB | 40..355 | 24..346 | 308 | 28.4 | Plus |
CG9259-PA | 422 | CG9259-PA | 40..355 | 24..346 | 308 | 28.4 | Plus |