Clone BO17466 Report

Search the DGRC for BO17466

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG13813-RA
Protein status:BO17466.pep: Imported from assembly
Sequenced Size:1324

Clone Sequence Records

BO17466.3prime Sequence

709 bp (633 high quality bases) assembled on 2006-10-13

> BO17466.3prime
ATGGTCTAGAAAGCTTGCGCACTGCTCGGAGTCCATTTTGAACAGCGGCT
CCGTCATGTTGTATTTTATAAGATCCTCGACGATACCAGTGATTCGCCGC
TTGAAAATTGGTAAAGTCCGGGCGTTGAGCATTTCGTATTCTTCAATGAG
CTCCTTGTACTTGGGTTCATCAGAGGATGTCGAAATACTTTGGATGGCCT
CGGAAACAGTATCGATATCAATCACTTCGTTGGCATTGGAAATGAAAAAG
GGTAGCGAAAATGCTCCCATTATCAAGCCGTAAACGCCGTACTGTTGCAA
TTGCCGATTGAAGACGCTGCGCGGATATATGCCCTCGAGGGAAAGATTGC
AGGACTTCAATTTCTGGTCCATCGTGTTGTAGTAAGCATCCATAAAGTCG
GGGAAGTGCTCGTCCCGCAATCGTTTCTCCGTGCAGGCAAACAGGTAATG
GACTATGTCCAGTACCGGCGGTGCATAGCGAGACATTTGAAAGTCGATCA
GCTTGGCCTCCACAGGTTGATCAGAATTAGGCTCATGTCTATAGAGAATA
TTGTTATTCCAGAAGTCACCGTGACAGATAACAGCATGTGGCGCCTGCGC
CTTTCCATCCACACAGTAAAGAGCCAAGGATTTCAGCTGGTTTTCACACA
ATTGCAGGACTTCCTGGACCGCGGCCACTTGGTCGCCATCGGATTCTTTC
AGGATGATT

BO17466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-PA 1293 CG13813-RA 600..1290 709..19 3455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-RA 1527 CG13813-RA 651..1341 709..19 3455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20232555..20233069 533..19 2575 100 Minus
3L 28110227 3L 20232319..20232496 709..532 890 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:47:10 has no hits.

BO17466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:57 Download gff for BO17466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-PA 600..1293 15..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:58 Download gff for BO17466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 651..1355 5..709 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:39 Download gff for BO17466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 651..1355 5..709 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:39 Download gff for BO17466.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20232319..20232496 532..709 100 -> Minus
3L 20232557..20233083 5..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:58 Download gff for BO17466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20225419..20225596 532..709 100 -> Minus
arm_3L 20225657..20226183 5..531 99   Minus

BO17466.5prime Sequence

606 bp (569 high quality bases) assembled on 2006-10-13

> BO17466.5prime
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCG

BO17466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-PA 1293 CG13813-RA 1..590 17..606 2950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-RA 1527 CG13813-RA 52..641 17..606 2950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20231720..20232309 17..606 2950 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:56:34 has no hits.

BO17466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:58 Download gff for BO17466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-PA 1..590 17..606 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:24 Download gff for BO17466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 52..641 17..606 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:58 Download gff for BO17466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 52..641 17..606 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:58 Download gff for BO17466.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20231720..20232309 17..606 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:24 Download gff for BO17466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20224820..20225409 17..606 100   Plus

BO17466.complete Sequence

1324 bp assembled on 2008-08-14

GenBank Submission: FJ634135

> BO17466.complete
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCGCAAGGCGAGAATCATCCTGAAAGAATCCGATGGCGACCAAGTGG
CCGCGGTCCAGGAAGTCCTGCAATTGTGTGAAAACCAGCTGAAATCCTTG
GCTCTTTACTGTGTGGATGGAAAGGCGCAGGCGCCACATGCTGTTATCTG
TCACGGTGACTTCTGGAATAACAATATTCTCTATAGACATGAGCCTAATT
CTGATCAACCTGTGGAGGCCAAGCTGATCGACTTTCAAATGTCTCGCTAT
GCACCGCCGGTACTGGACATAGTCCATTACCTGTTTGCCTGCACGGAGAA
ACGATTGCGGGACGAGCACTTCCCCGACTTTATGGATGCTTACTACAACA
CGATGGACCAGAAATTGAAGTCCTGCAATCTTTCCCTCGAGGGCATATAT
CCGCGCAGCGTCTTCAATCGGCAATTGCAACAGTACGGCGTTTACGGCTT
GATAATGGGAGCATTTTCGCTACCCTTTTTCATTTCCAATGCCAACGAAG
TGATTGATATCGATACTGTTTCCGAGGCCATCCAAAGTATTTCGACATCC
TCTGATGAACCCAAGTACAAGGAGCTCATTGAAGAATACGAAATGCTCAA
CGCCCGGACTTTACCAATTTTCAAGCGGCGAATCACTGGTATCGTCGAGG
ATCTTATAAAATACAACATGACGGAGCCGCTGTTCAAAATGGACTCCGAG
CAGTGCGCAAGCTTTCTAGACCAT

BO17466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-RA 1293 CG13813-PA 1..1290 17..1306 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-RA 1527 CG13813-RA 52..1341 17..1306 6450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20231720..20232496 17..793 3885 100 Plus
3L 28110227 3L 20232555..20233069 792..1306 2575 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:04:38 has no hits.

BO17466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:33 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 1..1293 17..1311 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:24 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 1..1293 17..1310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:01 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 52..1341 17..1308 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:33 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 1..1293 17..1311 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:02 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
CG13813-RA 52..1341 17..1308 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:02 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20231720..20232496 17..793 100 -> Plus
3L 20232557..20233069 794..1308 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:01 Download gff for BO17466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20224820..20225596 17..793 100 -> Plus
arm_3L 20225657..20226169 794..1308 99   Plus

BO17466.pep Sequence

Translation from 16 to 1324

> BO17466.pep
MSDNELSYAVTRVLLELYQRHGIPMVSQPMAGVGENAYGQVLRVSWPTIV
DAATVVVKMAPRNEARRSHMHVVDYYAREVFMYQKVFPVFRALSPDRNTF
TVAPALQANDLKAPDEFLIFEDLSESGFRPNSRCIMPTYDIVVCSLKALA
ELHACSFILQQTDPLQFKQLVEFVEKDNLFTSDIEEVTIEFGKAQLRKAR
IILKESDGDQVAAVQEVLQLCENQLKSLALYCVDGKAQAPHAVICHGDFW
NNNILYRHEPNSDQPVEAKLIDFQMSRYAPPVLDIVHYLFACTEKRLRDE
HFPDFMDAYYNTMDQKLKSCNLSLEGIYPRSVFNRQLQQYGVYGLIMGAF
SLPFFISNANEVIDIDTVSEAIQSISTSSDEPKYKELIEEYEMLNARTLP
IFKRRITGIVEDLIKYNMTEPLFKMDSEQCASFLDH

BO17466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13813-PA 430 CG13813-PA 1..430 1..430 2231 100 Plus
CG1561-PB 635 CG1561-PB 258..633 34..417 372 26.9 Plus
CG9259-PC 422 CG9259-PC 40..355 24..346 308 28.4 Plus
CG9259-PB 422 CG9259-PB 40..355 24..346 308 28.4 Plus
CG9259-PA 422 CG9259-PA 40..355 24..346 308 28.4 Plus