Clone Sequence Records
BO17467.3prime Sequence
813 bp (780 high quality bases) assembled on 2006-10-13
> BO17467.3prime
ATGGTCTAGAAAGCTTGCATTCGCCTCCTGAATTGCTTTTGGTTTCTTCG
AAATTGACCATATATATTGCAATATAACAGCAATAGAATAGACTATTCCA
ATAACTATAAAATAGAATGCGTAGACGGAAAACTGTTGAAAAACATTCAA
ATTCAGATTGGCCTTTTCCGAGACGACGACAAATGTGAGGATGCACTGCA
GGAGGAGTCCCACGAACGTGTTGAAACCAAACACCAGAGCGAAGCTATCC
TCCTCCAAGCTGCTGGCCAACTCCGAGCTGGCCACTGTTATGGTGAAGGC
AAACAGGCCTCCATACAGCACATAGCCAAGATAGGACAGATATATATCAT
CGGTCCAGCAGGAAAGCAAAACACAACCTCCTTCCAGGACCGACAGCAGA
GCCATCGAGAGCAGGCTGCTCCTGGTGTTCAGACGTCCAGCATGGAAATA
ACCGGCGAGAAGGGCGAACACAGCGCTTAGAAGCGTCAGGGCCACGTCCA
CAGCTCCATTCCAGGCTATTGTTGGTTCGTTCTCGAAGGACTTCCATACC
ACCTGCATATAGGTGGTGATTTGCAGAAATCCAGCCAAACTGATGGCATA
CCACAAGCTCCATTGTATCACCAAGGGATTAGTGTAGGCACTACGGAAGT
GGGACCAAAGGAGCTGCAACGCTGGTATCTTCTTTTCTTGGCTCGCTTCC
TCGTTACTGGGTTGCTCTGAACCCTTCTCCAGGTTACCACCATCCGATTT
GGTTCCACCTTCTATGGCCTCGCTTCGATTGTGAAAGTACAAACTCTTCT
CCACCTTTGGCAA
BO17467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-PA | 1341 | CG14694-RA | 544..1338 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-RA | 1369 | CG14694-RA | 554..1348 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10858840..10859133 | 520..813 | 1470 | 100 | Plus |
3R | 32079331 | 3R | 10858223..10858483 | 19..279 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 10858544..10858785 | 278..519 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:08:05 has no hits.
BO17467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:58 Download gff for
BO17467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-PA | 546..1341 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:24 Download gff for
BO17467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 556..1351 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:39 Download gff for
BO17467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 556..1351 | 15..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:39 Download gff for
BO17467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10858220..10858481 | 15..277 | 99 | <- | Plus |
3R | 10858544..10858785 | 278..519 | 100 | <- | Plus |
3R | 10858840..10859131 | 520..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:24 Download gff for
BO17467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6683942..6684203 | 15..277 | 99 | <- | Plus |
arm_3R | 6684266..6684507 | 278..519 | 100 | <- | Plus |
arm_3R | 6684562..6684853 | 520..811 | 100 | | Plus |
BO17467.5prime Sequence
857 bp (838 high quality bases) assembled on 2006-10-13
> BO17467.5prime
GAAGTTATCAGTCGACATGGAGTCGTGGCTGAAGATATCGTGCCTGCTAT
GCATATTCGGGTTTCTCCGGGAACTTCGACCCTCGGAGCCATACCACGCG
GAAATCCTGATGGGCGAGTGGTATCACGTCACCCAGGACGAGGTCAACCG
ATCCGTTTACCCGGTGGGCACATACTCCTACCTGGCGCTCCTAATCTTCG
TCTTCCTCATTACGGACCTGCTCAGATACAAGCCCGTGATCATCGCCAAT
GCCACTACAGGCATCTGCATCTGGGGCACACTGATTTGGACGACCACTTT
GAGCGGCCTGCAGGCGGTGGAGGTTTTCTATGGCTTCTACCAGGCGGGCG
AGGTGGCCTACTACTCGTACATCTACGCCAAGGTGGACAAACAGTACTAT
CCCAGGGTGACCTCGCACACCAGGGCAGCCATGTTCGTGGGCAAGCTAGT
TGCGGGAATCCTGGCTCAGATGGTCATTGGAATGAGGTGGATGAACTACA
AGCAACTGTTTTACATCACCGTCACCTCTCAAGTTGCTGCGCTGCTCTGG
GCATTCTTTTTGCCAAAGGTGGAGAAGAGTTTGTACTTTCACAATCGAAG
CGAGGCCATAGAAGGTGGAACCAAATCGGATGGTGGTAACCTGGAGAAGG
GTTCAGAGCAACCCAGTAACGAGGAAGCGAGCCAAGAAAAGAAGATACCA
GCGTTGCAGCTCCTTTGGTCCCACTTCCGTAGTGCCTACACTAATCCCTT
GGTGATACAATGGAGCTTGTGGTATGCCATCAGTTTGGCTGGATTTCTGC
AAATCACCACCTATATGCAGGTGGTATGGAAGTCCTTCGAGAACGAACCA
CAATAGC
BO17467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-PA | 1341 | CG14694-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-RA | 1369 | CG14694-RA | 11..852 | 17..857 | 4185 | 99.9 | Plus |
CG6574-RA | 1962 | CG6574-RA | 709..810 | 350..451 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10858843..10859165 | 850..528 | 1615 | 100 | Minus |
3R | 32079331 | 3R | 10859229..10859533 | 527..223 | 1525 | 100 | Minus |
3R | 32079331 | 3R | 10859595..10859803 | 225..17 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 10861801..10861902 | 451..350 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:32:37 has no hits.
BO17467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:59 Download gff for
BO17467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-PA | 1..842 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:41 Download gff for
BO17467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 7..852 | 13..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:04 Download gff for
BO17467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 7..852 | 13..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:04 Download gff for
BO17467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10858834..10859165 | 528..857 | 98 | <- | Minus |
3R | 10859229..10859530 | 226..527 | 100 | <- | Minus |
3R | 10859595..10859807 | 13..225 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:41 Download gff for
BO17467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6685317..6685529 | 13..225 | 99 | | Minus |
arm_3R | 6684556..6684887 | 528..857 | 98 | <- | Minus |
arm_3R | 6684951..6685252 | 226..527 | 100 | <- | Minus |
BO17467.complete Sequence
1372 bp assembled on 2006-10-11
GenBank Submission: FJ634136
> BO17467.complete
GAAGTTATCAGTCGACATGGAGTCGTGGCTGAAGATATCGTGCCTGCTAT
GCATATTCGGGTTTCTCCGGGAACTTCGACCCTCGGAGCCATACCACGCG
GAAATCCTGATGGGCGAGTGGTATCACGTCACCCAGGACGAGGTCAACCG
ATCCGTTTACCCGGTGGGCACATACTCCTACCTGGCGCTCCTAATCTTCG
TCTTCCTCATTACGGACCTGCTCAGATACAAGCCCGTGATCATCGCCAAT
GCCACTACAGGCATCTGCATCTGGGGCACACTGATTTGGACGACCACTTT
GAGCGGCCTGCAGGCGGTGGAGGTTTTCTATGGCTTCTACCAGGCGGGCG
AGGTGGCCTACTACTCGTACATCTACGCCAAGGTGGACAAACAGTACTAT
CCCAGGGTGACCTCGCACACCAGGGCAGCCATGTTCGTGGGCAAGCTAGT
TGCGGGAATCCTGGCTCAGATGGTCATTGGAATGAGGTGGATGAACTACA
AGCAACTGTTTTACATCACCGTCACCTCTCAAGTTGCTGCGCTGCTCTGG
GCATTCTTTTTGCCAAAGGTGGAGAAGAGTTTGTACTTTCACAATCGAAG
CGAGGCCATAGAAGGTGGAACCAAATCGGATGGTGGTAACCTGGAGAAGG
GTTCAGAGCAACCCAGTAACGAGGAAGCGAGCCAAGAAAAGAAGATACCA
GCGTTGCAGCTCCTTTGGTCCCACTTCCGTAGTGCCTACACTAATCCCTT
GGTGATACAATGGAGCTTGTGGTATGCCATCAGTTTGGCTGGATTTCTGC
AAATCACCACCTATATGCAGGTGGTATGGAAGTCCTTCGAGAACGAACCA
ACAATAGCCTGGAATGGAGCTGTGGACGTGGCCCTGACGCTTCTAAGCGC
TGTGTTCGCCCTTCTCGCCGGTTATTTCCATGCTGGACGTCTGAACACCA
GGAGCAGCCTGCTCTCGATGGCTCTGCTGTCGGTCCTGGAAGGAGGTTGT
GTTTTGCTTTCCTGCTGGACCGATGATATATATCTGTCCTATCTTGGCTA
TGTGCTGTATGGAGGCCTGTTTGCCTTCACCATAACAGTGGCCAGCTCGG
AGTTGGCCAGCAGCTTGGAGGAGGATAGCTTCGCTCTGGTGTTTGGTTTC
AACACGTTCGTGGGACTCCTCCTGCAGTGCATCCTCACATTTGTCGTCGT
CTCGGAAAAGGCCAATCTGAATTTGAATGTTTTTCAACAGTTTTCCGTCT
ACGCATTCTATTTTATAGTTATTGGAATAGTCTATTCTATTGCTGTTATA
TTGCAATATATATGGTCAATTTCGAAGAAACCAAAAGCAATTCAGGAGGC
GAATGCAAGCTTTCTAGACCAT
BO17467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-RA | 1341 | CG14694-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG6574-RA | 1335 | CG6574-PA | 334..435 | 350..451 | 255 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-RA | 1369 | CG14694-RA | 11..1348 | 17..1354 | 6690 | 100 | Plus |
CG6574-RA | 1962 | CG6574-RA | 709..810 | 350..451 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10858840..10859165 | 853..528 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 10859229..10859533 | 527..223 | 1525 | 100 | Minus |
3R | 32079331 | 3R | 10858223..10858483 | 1354..1094 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 10858544..10858785 | 1095..854 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 10859595..10859803 | 225..17 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 10861801..10861902 | 451..350 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:00 has no hits.
BO17467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:38 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:33 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 7..1351 | 13..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:38 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 11..1348 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:39 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 7..1351 | 13..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:04 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14694-RA | 11..1348 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:04 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10858221..10858481 | 1096..1356 | 99 | <- | Minus |
3R | 10858544..10858785 | 854..1095 | 100 | <- | Minus |
3R | 10858840..10859165 | 528..853 | 100 | <- | Minus |
3R | 10859229..10859530 | 226..527 | 100 | <- | Minus |
3R | 10859595..10859803 | 17..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:38 Download gff for
BO17467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6683943..6684203 | 1096..1356 | 99 | <- | Minus |
arm_3R | 6684266..6684507 | 854..1095 | 100 | <- | Minus |
arm_3R | 6684562..6684887 | 528..853 | 100 | <- | Minus |
arm_3R | 6684951..6685252 | 226..527 | 100 | <- | Minus |
arm_3R | 6685317..6685525 | 17..225 | 100 | | Minus |
BO17467.pep Sequence
Translation from 16 to 1372
> BO17467.pep
MESWLKISCLLCIFGFLRELRPSEPYHAEILMGEWYHVTQDEVNRSVYPV
GTYSYLALLIFVFLITDLLRYKPVIIANATTGICIWGTLIWTTTLSGLQA
VEVFYGFYQAGEVAYYSYIYAKVDKQYYPRVTSHTRAAMFVGKLVAGILA
QMVIGMRWMNYKQLFYITVTSQVAALLWAFFLPKVEKSLYFHNRSEAIEG
GTKSDGGNLEKGSEQPSNEEASQEKKIPALQLLWSHFRSAYTNPLVIQWS
LWYAISLAGFLQITTYMQVVWKSFENEPTIAWNGAVDVALTLLSAVFALL
AGYFHAGRLNTRSSLLSMALLSVLEGGCVLLSCWTDDIYLSYLGYVLYGG
LFAFTITVASSELASSLEEDSFALVFGFNTFVGLLLQCILTFVVVSEKAN
LNLNVFQQFSVYAFYFIVIGIVYSIAVILQYIWSISKKPKAIQEANASFL
DH
BO17467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14694-PA | 446 | CG14694-PA | 1..446 | 1..446 | 2308 | 100 | Plus |
CG6574-PA | 444 | CG6574-PA | 1..429 | 1..432 | 1354 | 58.3 | Plus |
CG17036-PB | 432 | CG17036-PB | 1..416 | 1..429 | 915 | 44.1 | Plus |
CG17036-PA | 432 | CG17036-PA | 1..416 | 1..429 | 915 | 44.1 | Plus |