Clone Sequence Records
BO17468.3prime Sequence
680 bp (679 high quality bases) assembled on 2006-10-13
> BO17468.3prime
ATGGTCTAGAAAGCTTGCAAAGTCGTCAAAATATCCCGATTTCTGGAATC
TGTCTAATATGGATTTGGTTTCTTCCATAAAATCCTCTAGCTGATATAGT
TTCTTGCGGGTTTCTTCGTTGTGCATCATATCACCTATATCCAACTTATG
GGTTCGCAACCCAATCGAAACTGGCAAGAATGTGCTCAGCAGTAGAAACT
CGTAATATCTGTGGCGTTTCATTTCCGCCCAAAATCCTTGTTCCGTCGGC
ATTGATCCTTGGTAGCCAATCTTCTTGAGAGTCTCTAGGAGGATGGATAG
GTAGTAGTTTAACAAAATGTCCAGCTCCTCTCTTCGCTGTGCTGGCCCCA
TCAACATGTAAATGGAGTACATAAGATCAACGGCCATTGGAGCCACATTA
CAGCCCTGATAATCCAGCAGCATGCAGTCCTCGAAGCATCCTGTTTCCTT
ATTGTTCTTAAACATCATGTTGCGGGAATGGAAGTCTGCGTGGCAGAGAA
CGTTGTATCCTGGCTGGGGATTGTTTCGATACTCCTGCATAGTCTCTCGC
AATCGGTCCTTAAAATGCAGACTTATTTTCTTAAAATGCGGCTGGTATTT
GCTGAGTTCAGGAATCCGTCCCAACATTTCCATAAATGGATCCATGCCTC
CGCTTATAATGGAACTGTCTATCAGCCCGG
BO17468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 1254 | CG13659-RA | 590..1251 | 680..19 | 3310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 610..1271 | 680..19 | 3310 | 100 | Minus |
CG31370-RB | 1408 | CG31370-RB | 682..976 | 649..355 | 400 | 76.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25301566..25302045 | 680..201 | 2400 | 100 | Minus |
3R | 32079331 | 3R | 25302105..25302287 | 201..19 | 915 | 100 | Minus |
3R | 32079331 | 3R | 25303208..25303502 | 649..355 | 395 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:53 has no hits.
BO17468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:59 Download gff for
BO17468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-PA | 590..1254 | 15..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:42 Download gff for
BO17468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 610..1274 | 15..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:19 Download gff for
BO17468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 610..1274 | 15..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:19 Download gff for
BO17468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25301566..25302045 | 201..680 | 100 | -> | Minus |
3R | 25302106..25302290 | 15..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:42 Download gff for
BO17468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21127288..21127767 | 201..680 | 100 | -> | Minus |
arm_3R | 21127828..21128012 | 15..200 | 98 | | Minus |
BO17468.5prime Sequence
731 bp (644 high quality bases) assembled on 2006-10-13
> BO17468.5prime
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACC
BO17468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 1254 | CG13659-RA | 1..715 | 17..731 | 3550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 21..735 | 17..731 | 3560 | 99.9 | Plus |
CG31436-RA | 1402 | CG31436-RA | 195..529 | 122..456 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25300911..25301453 | 17..559 | 2700 | 99.8 | Plus |
3R | 32079331 | 3R | 25301518..25301691 | 558..731 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:08:18 has no hits.
BO17468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:01 Download gff for
BO17468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-PA | 1..715 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:28 Download gff for
BO17468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 15..735 | 11..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:41 Download gff for
BO17468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 15..735 | 11..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:41 Download gff for
BO17468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25300905..25301453 | 11..559 | 99 | -> | Plus |
3R | 25301520..25301691 | 560..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:28 Download gff for
BO17468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21126627..21127175 | 11..559 | 99 | -> | Plus |
arm_3R | 21127242..21127413 | 560..731 | 100 | | Plus |
BO17468.complete Sequence
1285 bp assembled on 2006-10-11
GenBank Submission: FJ634137
> BO17468.complete
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCATTCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGC
TTCGAGGACTGCATGCTGCTGGATTATCAGGGCTGTAATGTGGCTCCAAT
GGCCGTTGATCTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGC
GAAGAGAGGAGCTGGACATTTTGTTAAACTACTACCTATCCATCCTCCTA
GAGACTCTCAAGAAGATTGGCTACCAAGGATCAATGCCGACGGAACAAGG
ATTTTGGGCGGAAATGAAACGCCACAGATATTACGAGTTTCTACTGCTGA
GCACATTCTTGCCAGTTTCGATTGGGTTGCGAACCCATAAGTTGGATATA
GGTGATATGATGCACAACGAAGAAACCCGCAAGAAACTATATCAGCTAGA
GGATTTTATGGAAGAAACCAAATCCATATTAGACAGATTCCAGAAATCGG
GATATTTTGACGACTTTGCAAGCTTTCTAGACCAT
BO17468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1254 | CG13659-PA | 1..1251 | 17..1267 | 6240 | 99.9 | Plus |
CG31370-RB | 1191 | CG31370-PB | 585..879 | 637..931 | 395 | 75.6 | Plus |
CG31436-RA | 1263 | CG31436-PA | 118..452 | 122..456 | 310 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 21..1271 | 17..1267 | 6240 | 99.9 | Plus |
CG31370-RB | 1408 | CG31370-RB | 682..976 | 637..931 | 395 | 75.6 | Plus |
CG31436-RA | 1402 | CG31436-RA | 195..529 | 122..456 | 310 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25300911..25301453 | 17..559 | 2700 | 99.8 | Plus |
3R | 32079331 | 3R | 25301518..25302045 | 558..1085 | 2640 | 100 | Plus |
3R | 32079331 | 3R | 25302105..25302287 | 1085..1267 | 915 | 100 | Plus |
3R | 32079331 | 3R | 25303208..25303502 | 637..931 | 395 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:13:31 has no hits.
BO17468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:40 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1254 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:35 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1254 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:05 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 21..1271 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:40 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1254 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:11 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 21..1271 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:11 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25300911..25301453 | 17..559 | 99 | -> | Plus |
3R | 25301520..25302045 | 560..1085 | 100 | -> | Plus |
3R | 25302106..25302287 | 1086..1269 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:05 Download gff for
BO17468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21126633..21127175 | 17..559 | 99 | -> | Plus |
arm_3R | 21127242..21127767 | 560..1085 | 100 | -> | Plus |
arm_3R | 21127828..21128009 | 1086..1269 | 98 | | Plus |
BO17468.pep Sequence
Translation from 16 to 1285
> BO17468.pep
MAEESFNDDELNPPEWLNVQFMTQVLRGYEKDSNLKVINLSFTPASAKGD
HYASIMFRARVEYTAQNGNFTKSLIIKTMIVEEGIKKDMFKDSPLFTTEI
GMYTKVLPEWERILRRANDPAKLYVECIYHSLQPHQILIFDDLVEMGYAV
VRDRFLTREEISSAYSKLAKIHAISMKFIHEQPEYLKEFKNGLCEMPGLI
DSSIISGGMDPFMEMLGRIPELSKYQPHFKKISLHFKDRLRETMQEYRNN
PQPGYNVLCHADFHSRNMMFKNNKETGCFEDCMLLDYQGCNVAPMAVDLM
YSIYMLMGPAQRREELDILLNYYLSILLETLKKIGYQGSMPTEQGFWAEM
KRHRYYEFLLLSTFLPVSIGLRTHKLDIGDMMHNEETRKKLYQLEDFMEE
TKSILDRFQKSGYFDDFASFLDH
BO17468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 417 | CG13659-PA | 1..417 | 1..417 | 2204 | 100 | Plus |
CG31370-PB | 396 | CG31370-PB | 1..395 | 1..416 | 1280 | 60.6 | Plus |
CG31300-PA | 422 | CG31300-PA | 8..419 | 4..414 | 1173 | 52.7 | Plus |
CG11893-PA | 416 | CG11893-PA | 8..415 | 4..416 | 1162 | 51.4 | Plus |
CG31436-PA | 420 | CG31436-PA | 10..416 | 6..412 | 1153 | 54.2 | Plus |