Clone BO17468 Report

Search the DGRC for BO17468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG13659-RA
Protein status:BO17468.pep: validated full length
Sequenced Size:1285

Clone Sequence Records

BO17468.3prime Sequence

680 bp (679 high quality bases) assembled on 2006-10-13

> BO17468.3prime
ATGGTCTAGAAAGCTTGCAAAGTCGTCAAAATATCCCGATTTCTGGAATC
TGTCTAATATGGATTTGGTTTCTTCCATAAAATCCTCTAGCTGATATAGT
TTCTTGCGGGTTTCTTCGTTGTGCATCATATCACCTATATCCAACTTATG
GGTTCGCAACCCAATCGAAACTGGCAAGAATGTGCTCAGCAGTAGAAACT
CGTAATATCTGTGGCGTTTCATTTCCGCCCAAAATCCTTGTTCCGTCGGC
ATTGATCCTTGGTAGCCAATCTTCTTGAGAGTCTCTAGGAGGATGGATAG
GTAGTAGTTTAACAAAATGTCCAGCTCCTCTCTTCGCTGTGCTGGCCCCA
TCAACATGTAAATGGAGTACATAAGATCAACGGCCATTGGAGCCACATTA
CAGCCCTGATAATCCAGCAGCATGCAGTCCTCGAAGCATCCTGTTTCCTT
ATTGTTCTTAAACATCATGTTGCGGGAATGGAAGTCTGCGTGGCAGAGAA
CGTTGTATCCTGGCTGGGGATTGTTTCGATACTCCTGCATAGTCTCTCGC
AATCGGTCCTTAAAATGCAGACTTATTTTCTTAAAATGCGGCTGGTATTT
GCTGAGTTCAGGAATCCGTCCCAACATTTCCATAAATGGATCCATGCCTC
CGCTTATAATGGAACTGTCTATCAGCCCGG

BO17468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 1254 CG13659-RA 590..1251 680..19 3310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 610..1271 680..19 3310 100 Minus
CG31370-RB 1408 CG31370-RB 682..976 649..355 400 76.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25301566..25302045 680..201 2400 100 Minus
3R 32079331 3R 25302105..25302287 201..19 915 100 Minus
3R 32079331 3R 25303208..25303502 649..355 395 75.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:53 has no hits.

BO17468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:59 Download gff for BO17468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-PA 590..1254 15..680 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:42 Download gff for BO17468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 610..1274 15..680 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:19 Download gff for BO17468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 610..1274 15..680 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:19 Download gff for BO17468.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25301566..25302045 201..680 100 -> Minus
3R 25302106..25302290 15..200 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:42 Download gff for BO17468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21127288..21127767 201..680 100 -> Minus
arm_3R 21127828..21128012 15..200 98   Minus

BO17468.5prime Sequence

731 bp (644 high quality bases) assembled on 2006-10-13

> BO17468.5prime
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACC

BO17468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 1254 CG13659-RA 1..715 17..731 3550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 21..735 17..731 3560 99.9 Plus
CG31436-RA 1402 CG31436-RA 195..529 122..456 310 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25300911..25301453 17..559 2700 99.8 Plus
3R 32079331 3R 25301518..25301691 558..731 870 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:08:18 has no hits.

BO17468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:01 Download gff for BO17468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-PA 1..715 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:28 Download gff for BO17468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 15..735 11..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:41 Download gff for BO17468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 15..735 11..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:41 Download gff for BO17468.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25300905..25301453 11..559 99 -> Plus
3R 25301520..25301691 560..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:28 Download gff for BO17468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21126627..21127175 11..559 99 -> Plus
arm_3R 21127242..21127413 560..731 100   Plus

BO17468.complete Sequence

1285 bp assembled on 2006-10-11

GenBank Submission: FJ634137

> BO17468.complete
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCATTCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGC
TTCGAGGACTGCATGCTGCTGGATTATCAGGGCTGTAATGTGGCTCCAAT
GGCCGTTGATCTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGC
GAAGAGAGGAGCTGGACATTTTGTTAAACTACTACCTATCCATCCTCCTA
GAGACTCTCAAGAAGATTGGCTACCAAGGATCAATGCCGACGGAACAAGG
ATTTTGGGCGGAAATGAAACGCCACAGATATTACGAGTTTCTACTGCTGA
GCACATTCTTGCCAGTTTCGATTGGGTTGCGAACCCATAAGTTGGATATA
GGTGATATGATGCACAACGAAGAAACCCGCAAGAAACTATATCAGCTAGA
GGATTTTATGGAAGAAACCAAATCCATATTAGACAGATTCCAGAAATCGG
GATATTTTGACGACTTTGCAAGCTTTCTAGACCAT

BO17468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1254 CG13659-PA 1..1251 17..1267 6240 99.9 Plus
CG31370-RB 1191 CG31370-PB 585..879 637..931 395 75.6 Plus
CG31436-RA 1263 CG31436-PA 118..452 122..456 310 72.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 21..1271 17..1267 6240 99.9 Plus
CG31370-RB 1408 CG31370-RB 682..976 637..931 395 75.6 Plus
CG31436-RA 1402 CG31436-RA 195..529 122..456 310 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25300911..25301453 17..559 2700 99.8 Plus
3R 32079331 3R 25301518..25302045 558..1085 2640 100 Plus
3R 32079331 3R 25302105..25302287 1085..1267 915 100 Plus
3R 32079331 3R 25303208..25303502 637..931 395 75.6 Plus
Blast to na_te.dros performed on 2014-11-27 10:13:31 has no hits.

BO17468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:40 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1254 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:35 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1254 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:05 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 21..1271 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:40 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1254 17..1271 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:11 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 21..1271 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:11 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25300911..25301453 17..559 99 -> Plus
3R 25301520..25302045 560..1085 100 -> Plus
3R 25302106..25302287 1086..1269 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:05 Download gff for BO17468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21126633..21127175 17..559 99 -> Plus
arm_3R 21127242..21127767 560..1085 100 -> Plus
arm_3R 21127828..21128009 1086..1269 98   Plus

BO17468.pep Sequence

Translation from 16 to 1285

> BO17468.pep
MAEESFNDDELNPPEWLNVQFMTQVLRGYEKDSNLKVINLSFTPASAKGD
HYASIMFRARVEYTAQNGNFTKSLIIKTMIVEEGIKKDMFKDSPLFTTEI
GMYTKVLPEWERILRRANDPAKLYVECIYHSLQPHQILIFDDLVEMGYAV
VRDRFLTREEISSAYSKLAKIHAISMKFIHEQPEYLKEFKNGLCEMPGLI
DSSIISGGMDPFMEMLGRIPELSKYQPHFKKISLHFKDRLRETMQEYRNN
PQPGYNVLCHADFHSRNMMFKNNKETGCFEDCMLLDYQGCNVAPMAVDLM
YSIYMLMGPAQRREELDILLNYYLSILLETLKKIGYQGSMPTEQGFWAEM
KRHRYYEFLLLSTFLPVSIGLRTHKLDIGDMMHNEETRKKLYQLEDFMEE
TKSILDRFQKSGYFDDFASFLDH

BO17468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 417 CG13659-PA 1..417 1..417 2204 100 Plus
CG31370-PB 396 CG31370-PB 1..395 1..416 1280 60.6 Plus
CG31300-PA 422 CG31300-PA 8..419 4..414 1173 52.7 Plus
CG11893-PA 416 CG11893-PA 8..415 4..416 1162 51.4 Plus
CG31436-PA 420 CG31436-PA 10..416 6..412 1153 54.2 Plus