Clone Sequence Records
BO17473.3prime Sequence
743 bp (678 high quality bases) assembled on 2006-10-13
> BO17473.3prime
ATGGTCTAGAAAGCTTGCGAATCGATTTACAAATACAGTTGTGATACTAT
CGCCATCATTGTAGGAGGAGTATGGAACAACTGATTGCATAACTCCAAGC
ATTCGATTCCACAGAATTCTCTTTGCATCTCTGCCCCAGACCAGATCGAA
GTGGTTAAAGTTTTCATTCGGAACGAGATACTTTTCCACCACATTGGGCA
ACCTGTTGAAAAGCATGTCCACATCTTCCGGCGGAGCTATCCAATCGTTT
TTGGCATAATAGATTGCCACCTTGGCCTTGACTTTCTCCAGTTCATAAGG
CGGTGGGGACAGGCTGCCATAATGCAGGAAGTTCAACAGTCCGTAGTCAA
ACTGCTGGAATTTCCCAGAGTTCCTCAGCTGGCCGTAGTGGTGCATCTGC
CTGATGGATGCACCGGCCGGAGTGTGACCCACTACGATCGGCAACATCGT
TTGGTTCACTTGCTGGCCATTGAAACCGAAAAGAATAAAGAAGAGACTCT
GACAGACACTGCTGGAAATGATATCCCGGCAGGCATAACGCTTGAACTGA
TCAATCACACTGTTGCTGGGCAGGAACTCATTGTAGCCAGCCGCGCTTAG
GAAGGAGGCAACTGCAGTATCCTGAGAGGCCAACAAATTCACAATGGGAC
TACGGCAATGGGACAGGAAGGCCACTGGAGCCAATGCCTGCATCATAACG
ATCTTTTCCATGTACTCTGGTCTTTCGCTGGCCAAAATCCAAA
BO17473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-PA | 1269 | CG18301-RA | 544..1266 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 575..1297 | 741..19 | 3615 | 100 | Minus |
Lip4-RC | 1936 | CG6113-RC | 1335..1450 | 291..176 | 250 | 81 | Minus |
Lip4-RB | 1861 | CG6113-RB | 1478..1593 | 291..176 | 250 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532986..10533573 | 606..19 | 2940 | 100 | Minus |
2L | 23513712 | 2L | 10532796..10532930 | 741..607 | 675 | 100 | Minus |
2L | 23513712 | 2L | 10531177..10531292 | 291..176 | 250 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:53:30 has no hits.
BO17473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for
BO17473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-PA | 545..1269 | 15..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:56 Download gff for
BO17473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 576..1300 | 15..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:22 Download gff for
BO17473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 576..1300 | 15..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:22 Download gff for
BO17473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10532797..10532930 | 607..740 | 100 | -> | Minus |
2L | 10532986..10533576 | 15..606 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:56 Download gff for
BO17473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10532797..10532930 | 607..740 | 100 | -> | Minus |
arm_2L | 10532986..10533576 | 15..606 | 99 | | Minus |
BO17473.5prime Sequence
734 bp (646 high quality bases) assembled on 2006-10-13
> BO17473.5prime
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAAGATACTGCAGTTGCCCTCTTC
CCAAGCGCGGCTGGCTACAATGAGTTCCTGCCCC
BO17473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-PA | 1269 | CG18301-RA | 1..717 | 17..733 | 3485 | 99.4 | Plus |
CG6113-PA | 1305 | CG6113-RA | 580..606 | 521..547 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 32..748 | 17..733 | 3525 | 99.4 | Plus |
Lip4-RC | 1936 | CG6113-RC | 456..955 | 137..636 | 385 | 73.4 | Plus |
Lip4-RB | 1861 | CG6113-RB | 605..1104 | 137..636 | 385 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532567..10532930 | 331..694 | 1805 | 99.7 | Plus |
2L | 23513712 | 2L | 10532334..10532513 | 154..333 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10531852..10531989 | 17..154 | 690 | 100 | Plus |
2L | 23513712 | 2L | 10530305..10530617 | 324..636 | 290 | 72.8 | Plus |
2L | 23513712 | 2L | 10668794..10668922 | 434..562 | 180 | 76 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:47:50 has no hits.
BO17473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for
BO17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-PA | 1..717 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:00 Download gff for
BO17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 23..748 | 6..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:42 Download gff for
BO17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 23..748 | 6..734 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:42 Download gff for
BO17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10531843..10531989 | 6..154 | 97 | -> | Plus |
2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
2L | 10532569..10532930 | 333..694 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:00 Download gff for
BO17473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10531843..10531989 | 6..154 | 97 | -> | Plus |
arm_2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
arm_2L | 10532569..10532930 | 333..694 | 99 | -> | Plus |
BO17473.complete Sequence
1300 bp assembled on 2006-10-11
GenBank Submission: FJ634138
> BO17473.complete
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTC
CTAAGCGCGGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGA
TCAGTTCAAGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTC
AGAGTCTCTTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAA
ACGATGTTGCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAG
GCAGATGCACCACTACGGCCAGCTGAGGAACTCTGGGAAATTCCAGCAGT
TTGACTACGGACTGTTGAACTTCCTGCATTATGGCAGCCTGTCCCCACCG
CCTTATGAACTGGAGAAAGTCAAGGCCAAGGTGGCAATCTATTATGCCAA
AAACGATTGGATAGCTCCGCCGGAAGATGTGGACATGCTTTTCAACAGGT
TGCCCAATGTGGTGGAAAAGTATCTCGTTCCGAATGAAAACTTTAACCAC
TTCGATCTGGTCTGGGGCAGAGATGCAAAGAGAATTCTGTGGAATCGAAT
GCTTGGAGTTATGCAATCAGTTGTTCCATACTCCTCCTACAATGATGGCG
ATAGTATCACAACTGTATTTGTAAATCGATTCGCAAGCTTTCTAGACCAT
BO17473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1269 | CG18301-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Lip4-RC | 1347 | CG6113-PC | 336..737 | 235..636 | 345 | 72.4 | Plus |
Lip4-RB | 1299 | CG6113-PB | 294..695 | 235..636 | 345 | 72.4 | Plus |
Lip4-RC | 1347 | CG6113-PC | 1117..1232 | 1010..1125 | 250 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-RA | 1371 | CG18301-RA | 32..1297 | 17..1282 | 6330 | 100 | Plus |
Lip4-RC | 1936 | CG6113-RC | 554..955 | 235..636 | 345 | 72.4 | Plus |
Lip4-RB | 1861 | CG6113-RB | 703..1104 | 235..636 | 345 | 72.4 | Plus |
Lip4-RC | 1936 | CG6113-RC | 1335..1450 | 1010..1125 | 250 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10532986..10533573 | 695..1282 | 2940 | 100 | Plus |
2L | 23513712 | 2L | 10532567..10532930 | 331..694 | 1820 | 100 | Plus |
2L | 23513712 | 2L | 10532334..10532513 | 154..333 | 900 | 100 | Plus |
2L | 23513712 | 2L | 10531852..10531989 | 17..154 | 690 | 100 | Plus |
2L | 23513712 | 2L | 10530305..10530617 | 324..636 | 290 | 72.8 | Plus |
2L | 23513712 | 2L | 10531177..10531292 | 1010..1125 | 250 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:08 has no hits.
BO17473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:20 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:16 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:50 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 32..1297 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:20 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:01 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18301-RA | 32..1297 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:01 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10531852..10531989 | 17..154 | 100 | -> | Plus |
2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
2L | 10532569..10532930 | 333..694 | 100 | -> | Plus |
2L | 10532986..10533573 | 695..1284 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:50 Download gff for
BO17473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10531852..10531989 | 17..154 | 100 | -> | Plus |
arm_2L | 10532335..10532512 | 155..332 | 100 | -> | Plus |
arm_2L | 10532569..10532930 | 333..694 | 100 | -> | Plus |
arm_2L | 10532986..10533573 | 695..1284 | 99 | | Plus |
BO17473.pep Sequence
Translation from 16 to 1300
> BO17473.pep
MSLSSSSKFLIWTFFLGLFQLEANAFFNPFQLAIPSSVLEDAHLNTIQLI
SKYGYPAENYTVQSDDGYLLGLFRIARPGALPVLLVHGLMDSSDTWVMMG
PSSSLGYMLYEQGYDVWMANVRGNTYTKRHVRYSAEDSDFWNFSFHEMGI
FDLPAIIDYILMQSGFGQLHYIGHSQGSTIFWILASERPEYMEKIVMMQA
LAPVAFLSHCRSPIVNLLASQDTAVASFLSAAGYNEFLPSNSVIDQFKRY
ACRDIISSSVCQSLFFILFGFNGQQVNQTMLPIVVGHTPAGASIRQMHHY
GQLRNSGKFQQFDYGLLNFLHYGSLSPPPYELEKVKAKVAIYYAKNDWIA
PPEDVDMLFNRLPNVVEKYLVPNENFNHFDLVWGRDAKRILWNRMLGVMQ
SVVPYSSYNDGDSITTVFVNRFASFLDH
BO17473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18301-PA | 422 | CG18301-PA | 1..422 | 1..422 | 2232 | 100 | Plus |
Lip4-PA | 434 | CG6113-PA | 59..428 | 34..401 | 1271 | 60 | Plus |
Lip4-PC | 448 | CG6113-PC | 73..442 | 34..401 | 1271 | 60 | Plus |
Lip4-PB | 432 | CG6113-PB | 59..426 | 34..401 | 1257 | 59.7 | Plus |
CG31871-PA | 531 | CG31871-PA | 67..431 | 34..396 | 987 | 49.1 | Plus |