Clone BO17473 Report

Search the DGRC for BO17473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG18301-RA
Protein status:BO17473.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO17473.3prime Sequence

743 bp (678 high quality bases) assembled on 2006-10-13

> BO17473.3prime
ATGGTCTAGAAAGCTTGCGAATCGATTTACAAATACAGTTGTGATACTAT
CGCCATCATTGTAGGAGGAGTATGGAACAACTGATTGCATAACTCCAAGC
ATTCGATTCCACAGAATTCTCTTTGCATCTCTGCCCCAGACCAGATCGAA
GTGGTTAAAGTTTTCATTCGGAACGAGATACTTTTCCACCACATTGGGCA
ACCTGTTGAAAAGCATGTCCACATCTTCCGGCGGAGCTATCCAATCGTTT
TTGGCATAATAGATTGCCACCTTGGCCTTGACTTTCTCCAGTTCATAAGG
CGGTGGGGACAGGCTGCCATAATGCAGGAAGTTCAACAGTCCGTAGTCAA
ACTGCTGGAATTTCCCAGAGTTCCTCAGCTGGCCGTAGTGGTGCATCTGC
CTGATGGATGCACCGGCCGGAGTGTGACCCACTACGATCGGCAACATCGT
TTGGTTCACTTGCTGGCCATTGAAACCGAAAAGAATAAAGAAGAGACTCT
GACAGACACTGCTGGAAATGATATCCCGGCAGGCATAACGCTTGAACTGA
TCAATCACACTGTTGCTGGGCAGGAACTCATTGTAGCCAGCCGCGCTTAG
GAAGGAGGCAACTGCAGTATCCTGAGAGGCCAACAAATTCACAATGGGAC
TACGGCAATGGGACAGGAAGGCCACTGGAGCCAATGCCTGCATCATAACG
ATCTTTTCCATGTACTCTGGTCTTTCGCTGGCCAAAATCCAAA

BO17473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-PA 1269 CG18301-RA 544..1266 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 575..1297 741..19 3615 100 Minus
Lip4-RC 1936 CG6113-RC 1335..1450 291..176 250 81 Minus
Lip4-RB 1861 CG6113-RB 1478..1593 291..176 250 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532986..10533573 606..19 2940 100 Minus
2L 23513712 2L 10532796..10532930 741..607 675 100 Minus
2L 23513712 2L 10531177..10531292 291..176 250 81 Minus
Blast to na_te.dros performed on 2015-02-03 06:53:30 has no hits.

BO17473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for BO17473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-PA 545..1269 15..740 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:56 Download gff for BO17473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 576..1300 15..740 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:22 Download gff for BO17473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 576..1300 15..740 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:22 Download gff for BO17473.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10532797..10532930 607..740 100 -> Minus
2L 10532986..10533576 15..606 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:56 Download gff for BO17473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10532797..10532930 607..740 100 -> Minus
arm_2L 10532986..10533576 15..606 99   Minus

BO17473.5prime Sequence

734 bp (646 high quality bases) assembled on 2006-10-13

> BO17473.5prime
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAAGATACTGCAGTTGCCCTCTTC
CCAAGCGCGGCTGGCTACAATGAGTTCCTGCCCC

BO17473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-PA 1269 CG18301-RA 1..717 17..733 3485 99.4 Plus
CG6113-PA 1305 CG6113-RA 580..606 521..547 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 32..748 17..733 3525 99.4 Plus
Lip4-RC 1936 CG6113-RC 456..955 137..636 385 73.4 Plus
Lip4-RB 1861 CG6113-RB 605..1104 137..636 385 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532567..10532930 331..694 1805 99.7 Plus
2L 23513712 2L 10532334..10532513 154..333 900 100 Plus
2L 23513712 2L 10531852..10531989 17..154 690 100 Plus
2L 23513712 2L 10530305..10530617 324..636 290 72.8 Plus
2L 23513712 2L 10668794..10668922 434..562 180 76 Plus
Blast to na_te.dros performed on 2015-02-02 18:47:50 has no hits.

BO17473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for BO17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-PA 1..717 17..734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:00 Download gff for BO17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 23..748 6..734 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:42 Download gff for BO17473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 23..748 6..734 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:42 Download gff for BO17473.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10531843..10531989 6..154 97 -> Plus
2L 10532335..10532512 155..332 100 -> Plus
2L 10532569..10532930 333..694 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:00 Download gff for BO17473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10531843..10531989 6..154 97 -> Plus
arm_2L 10532335..10532512 155..332 100 -> Plus
arm_2L 10532569..10532930 333..694 99 -> Plus

BO17473.complete Sequence

1300 bp assembled on 2006-10-11

GenBank Submission: FJ634138

> BO17473.complete
GAAGTTATCAGTCGACATGTCTCTATCATCGTCTTCGAAATTTCTTATAT
GGACCTTCTTTTTGGGCCTATTCCAGCTGGAAGCCAATGCATTTTTCAAT
CCTTTTCAACTGGCTATACCTTCATCAGTTTTAGAAGATGCACACTTGAA
TACGATACAATTGATTTCCAAATATGGATACCCGGCGGAGAATTACACAG
TGCAGAGTGACGATGGCTACTTATTGGGACTCTTCAGGATCGCACGTCCT
GGAGCCCTGCCTGTGCTGCTGGTCCACGGACTAATGGACAGTTCCGATAC
CTGGGTGATGATGGGTCCTTCCAGTTCCTTAGGATACATGTTGTACGAGC
AGGGCTACGACGTCTGGATGGCCAATGTGCGGGGTAATACCTATACGAAA
CGCCATGTTCGTTACTCCGCCGAAGACTCCGATTTCTGGAACTTTTCGTT
CCATGAGATGGGCATTTTCGATCTGCCTGCCATCATTGATTACATACTGA
TGCAATCTGGATTCGGTCAGTTGCACTACATTGGTCACTCCCAGGGATCA
ACTATCTTCTGGATTTTGGCCAGCGAAAGACCAGAGTACATGGAAAAGAT
CGTTATGATGCAGGCATTGGCTCCAGTGGCCTTCCTGTCCCATTGCCGTA
GTCCCATTGTGAATTTGTTGGCCTCTCAGGATACTGCAGTTGCCTCCTTC
CTAAGCGCGGCTGGCTACAATGAGTTCCTGCCCAGCAACAGTGTGATTGA
TCAGTTCAAGCGTTATGCCTGCCGGGATATCATTTCCAGCAGTGTCTGTC
AGAGTCTCTTCTTTATTCTTTTCGGTTTCAATGGCCAGCAAGTGAACCAA
ACGATGTTGCCGATCGTAGTGGGTCACACTCCGGCCGGTGCATCCATCAG
GCAGATGCACCACTACGGCCAGCTGAGGAACTCTGGGAAATTCCAGCAGT
TTGACTACGGACTGTTGAACTTCCTGCATTATGGCAGCCTGTCCCCACCG
CCTTATGAACTGGAGAAAGTCAAGGCCAAGGTGGCAATCTATTATGCCAA
AAACGATTGGATAGCTCCGCCGGAAGATGTGGACATGCTTTTCAACAGGT
TGCCCAATGTGGTGGAAAAGTATCTCGTTCCGAATGAAAACTTTAACCAC
TTCGATCTGGTCTGGGGCAGAGATGCAAAGAGAATTCTGTGGAATCGAAT
GCTTGGAGTTATGCAATCAGTTGTTCCATACTCCTCCTACAATGATGGCG
ATAGTATCACAACTGTATTTGTAAATCGATTCGCAAGCTTTCTAGACCAT

BO17473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1269 CG18301-PA 1..1266 17..1282 6330 100 Plus
Lip4-RC 1347 CG6113-PC 336..737 235..636 345 72.4 Plus
Lip4-RB 1299 CG6113-PB 294..695 235..636 345 72.4 Plus
Lip4-RC 1347 CG6113-PC 1117..1232 1010..1125 250 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-RA 1371 CG18301-RA 32..1297 17..1282 6330 100 Plus
Lip4-RC 1936 CG6113-RC 554..955 235..636 345 72.4 Plus
Lip4-RB 1861 CG6113-RB 703..1104 235..636 345 72.4 Plus
Lip4-RC 1936 CG6113-RC 1335..1450 1010..1125 250 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10532986..10533573 695..1282 2940 100 Plus
2L 23513712 2L 10532567..10532930 331..694 1820 100 Plus
2L 23513712 2L 10532334..10532513 154..333 900 100 Plus
2L 23513712 2L 10531852..10531989 17..154 690 100 Plus
2L 23513712 2L 10530305..10530617 324..636 290 72.8 Plus
2L 23513712 2L 10531177..10531292 1010..1125 250 81 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:08 has no hits.

BO17473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:20 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:16 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:50 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 32..1297 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:20 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:01 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
CG18301-RA 32..1297 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:01 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10531852..10531989 17..154 100 -> Plus
2L 10532335..10532512 155..332 100 -> Plus
2L 10532569..10532930 333..694 100 -> Plus
2L 10532986..10533573 695..1284 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:50 Download gff for BO17473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10531852..10531989 17..154 100 -> Plus
arm_2L 10532335..10532512 155..332 100 -> Plus
arm_2L 10532569..10532930 333..694 100 -> Plus
arm_2L 10532986..10533573 695..1284 99   Plus

BO17473.pep Sequence

Translation from 16 to 1300

> BO17473.pep
MSLSSSSKFLIWTFFLGLFQLEANAFFNPFQLAIPSSVLEDAHLNTIQLI
SKYGYPAENYTVQSDDGYLLGLFRIARPGALPVLLVHGLMDSSDTWVMMG
PSSSLGYMLYEQGYDVWMANVRGNTYTKRHVRYSAEDSDFWNFSFHEMGI
FDLPAIIDYILMQSGFGQLHYIGHSQGSTIFWILASERPEYMEKIVMMQA
LAPVAFLSHCRSPIVNLLASQDTAVASFLSAAGYNEFLPSNSVIDQFKRY
ACRDIISSSVCQSLFFILFGFNGQQVNQTMLPIVVGHTPAGASIRQMHHY
GQLRNSGKFQQFDYGLLNFLHYGSLSPPPYELEKVKAKVAIYYAKNDWIA
PPEDVDMLFNRLPNVVEKYLVPNENFNHFDLVWGRDAKRILWNRMLGVMQ
SVVPYSSYNDGDSITTVFVNRFASFLDH

BO17473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18301-PA 422 CG18301-PA 1..422 1..422 2232 100 Plus
Lip4-PA 434 CG6113-PA 59..428 34..401 1271 60 Plus
Lip4-PC 448 CG6113-PC 73..442 34..401 1271 60 Plus
Lip4-PB 432 CG6113-PB 59..426 34..401 1257 59.7 Plus
CG31871-PA 531 CG31871-PA 67..431 34..396 987 49.1 Plus