Clone BO17474 Report

Search the DGRC for BO17474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG31104-RA
Protein status:BO17474.pep: Imported from assembly
Sequenced Size:1294

Clone Sequence Records

BO17474.3prime Sequence

612 bp (577 high quality bases) assembled on 2006-10-13

> BO17474.3prime
ATGGTCTAGAAAGCTTGCTCCATCCTTAAAGTATCCTAGTTGTTCATACT
TGGTCAAAAGCTTATAGACATCTTGAACATAGTCGTCTAGGAAGTATGAC
TTCAGTCGGGCCTGGGAATCTTGGAGTGCCTCATGCATTTTCAAATCATT
TGATTTAACGCCCACCATTATAGGAAGAAAGGTGCTTATCAGAAAGAAAT
CATAATACTTGTTATTTTGTATTTGCTCCCACAATTCTCTTTGGGTAGGC
ATATCCCCCTTGTATCCAATTTTCCTGAGGGTGGCTACCAAAACCGAAAA
ATATTCATTGATCAAGTTCTCTCCCATTTCCCAGCGCTGTTCCGGCTCCA
TCAGCATATATACGGAGTATGTCAAGTCCACTGTAATGGGGCACAGATTG
CTCAATTGAAAGTCGACTAACATCACGTCATCGTAGGCTCCCAACTCCTT
ATTGTGTCTAAACATCATATTGCGAAGATGGAAGTCACCGTGACACAGGA
CGTAGTACCGATCGTTTCGCCGATATTTGTGATATTCATGCATCTCAACC
TCTAGGCGTTTGCATGTAATTATCTTTAATCTTTTCAAAATGATGTTTAA
TACTTTCTTAGT

BO17474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 1263 CG31104-RA 669..1257 612..22 2850 99.4 Minus
CG31300-PA 1269 CG31300-RA 784..824 501..461 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 729..1317 612..22 2890 99.5 Minus
CG31300-RA 1474 CG31300-RA 747..1180 611..176 615 77.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25286256..25286665 612..201 1960 99.5 Minus
3R 32079331 3R 25286730..25286909 201..22 885 99.4 Minus
3R 32079331 3R 25284427..25284835 611..201 500 75.9 Minus
Blast to na_te.dros performed on 2015-02-13 00:32:02 has no hits.

BO17474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for BO17474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-PA 669..1263 15..612 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:40:50 Download gff for BO17474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 729..1323 15..612 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:39 Download gff for BO17474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 729..1323 15..612 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:39 Download gff for BO17474.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25286256..25286665 201..612 99 -> Minus
3R 25286731..25286915 15..200 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:40:50 Download gff for BO17474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111978..21112387 201..612 99 -> Minus
arm_3R 21112453..21112637 15..200 97   Minus

BO17474.5prime Sequence

638 bp (581 high quality bases) assembled on 2006-10-13

> BO17474.5prime
GAAGTTATCCTTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAA

BO17474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 1263 CG31104-RA 1..622 17..638 3110 100 Plus
CG13658-PA 1251 CG13658-RA 421..467 431..477 185 95.7 Plus
CG31300-PA 1269 CG31300-RA 150..185 160..195 180 100 Plus
CG31300-PA 1269 CG31300-RA 285..326 295..336 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 61..682 17..638 3110 100 Plus
CG31300-RA 1474 CG31300-RA 108..676 47..615 805 76.1 Plus
CG13658-RB 1334 CG13658-RB 165..603 164..602 605 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25285533..25286081 17..565 2745 100 Plus
3R 32079331 3R 25283727..25284142 47..462 685 77.6 Plus
3R 32079331 3R 25287638..25287955 164..481 555 78.3 Plus
3R 32079331 3R 25289952..25290486 36..570 410 71.8 Plus
3R 32079331 3R 25286135..25286209 564..638 375 100 Plus
3R 32079331 3R 25304368..25304655 165..452 270 72.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:16:48 has no hits.

BO17474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:09 Download gff for BO17474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-PA 1..620 17..636 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:09 Download gff for BO17474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 54..682 11..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:36 Download gff for BO17474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 54..682 11..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:36 Download gff for BO17474.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25285526..25286081 11..565 99 -> Plus
3R 25286137..25286209 566..638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:09 Download gff for BO17474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111248..21111803 11..565 99 -> Plus
arm_3R 21111859..21111931 566..638 100   Plus

BO17474.complete Sequence

1294 bp assembled on 2008-08-14

GenBank Submission: FJ634139

> BO17474.complete
GAAGTTATCCTTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAA
CATCATTTTGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTCCATCTTCGCAATATGATGTTTAGACACAATAAGGAG
TTGGGAGCCTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCT
GTGCCCCATTACAGTGGACTTGACATACTCCGTATATATGCTGATGGAGC
CGGAACAGCGCTGGGAAATGGGAGAGAACTTGATCAATGAATATTTTTCG
GTTTTGGTAGCCACCCTCAGGAAAATTGGATACAAGGGGGATATGCCTAC
CCAAAGAGAATTGTGGGAGCAAATACAAAATAACAAGTATTATGATTTCT
TTCTGATAAGCACCTTTCTTCCTATAATGGTGGGCGTTAAATCAAATGAT
TTGAAAATGCATGAGGCACTCCAAGATTCCCAGGCCCGACTGAAGTCCTA
CTTCCTAGACGACTATGTTCAAGATGTCTATAAGCTTTTGACCAAGTATG
AACAACTAGGATACTTTAAGGATCTAGCAAGCTTTCTAGACCAT

BO17474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1263 CG31104-PA 1..1260 17..1276 6300 100 Plus
CG31300-RA 1269 CG31300-PA 37..1109 47..1119 1525 76.1 Plus
CG13658-RB 1269 CG13658-PB 154..592 164..602 590 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 61..1320 17..1276 6300 100 Plus
CG31300-RA 1474 CG31300-RA 108..1180 47..1119 1525 76.1 Plus
CG13658-RB 1334 CG13658-RB 165..603 164..602 590 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25285533..25286081 17..565 2745 100 Plus
3R 32079331 3R 25286135..25286665 564..1094 2655 100 Plus
3R 32079331 3R 25286730..25286912 1094..1276 915 100 Plus
3R 32079331 3R 25284305..25284835 564..1094 810 76.8 Plus
3R 32079331 3R 25283727..25284142 47..462 685 77.6 Plus
3R 32079331 3R 25287638..25287955 164..481 555 78.3 Plus
3R 32079331 3R 25289952..25290750 36..834 440 70.3 Plus
3R 32079331 3R 25304368..25304655 165..452 270 72.9 Plus
Blast to na_te.dros performed on 2014-11-27 06:43:05 has no hits.

BO17474.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:14 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 54..1323 11..1280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:45 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1320 17..1278 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:56 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1320 17..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:29 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1320 17..1278 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:29 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25285533..25286081 17..565 100 -> Plus
3R 25286137..25286665 566..1094 100 -> Plus
3R 25286731..25286912 1095..1278 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:45 Download gff for BO17474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111255..21111803 17..565 100 -> Plus
arm_3R 21111859..21112387 566..1094 100 -> Plus
arm_3R 21112453..21112634 1095..1278 98   Plus

BO17474.pep Sequence

Translation from 16 to 1294

> BO17474.pep
MEGKNIEYNADELQAPAWLNAQFIGDILREYEQLPDLKVTDLQVSPATAQ
GDHYASVMFRTKVEYTTPKGKFFKPLIIKTMPEQEGHKKDMLSESHLFET
EIGMYCHALPEFERILREAGDNTKLFVPCIYHSLKPRQVMIFEDLVPQGY
TVIRDSPPSLGDLKLAFDKLAKWHAVSMKVINEQPYFLKEFQYGLFEMPT
IDTDPFITTGMTNFIEMLDKMPELRKYKHHFEKIKDNYMQRLEVEMHEYH
KYRRNDRYYVLCHGDFHLRNMMFRHNKELGAYDDVMLVDFQLSNLCPITV
DLTYSVYMLMEPEQRWEMGENLINEYFSVLVATLRKIGYKGDMPTQRELW
EQIQNNKYYDFFLISTFLPIMVGVKSNDLKMHEALQDSQARLKSYFLDDY
VQDVYKLLTKYEQLGYFKDLASFLDH

BO17474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 420 CG31104-PA 1..420 1..420 2244 100 Plus
CG31300-PA 422 CG31300-PA 9..422 7..420 1647 72.2 Plus
CG11893-PA 416 CG11893-PA 9..416 7..420 1555 69.1 Plus
CG13658-PB 422 CG13658-PB 9..422 7..420 1416 62.3 Plus
CG31436-PA 420 CG31436-PA 6..416 4..415 1201 54.4 Plus