Clone Sequence Records
BO17474.3prime Sequence
612 bp (577 high quality bases) assembled on 2006-10-13
> BO17474.3prime
ATGGTCTAGAAAGCTTGCTCCATCCTTAAAGTATCCTAGTTGTTCATACT
TGGTCAAAAGCTTATAGACATCTTGAACATAGTCGTCTAGGAAGTATGAC
TTCAGTCGGGCCTGGGAATCTTGGAGTGCCTCATGCATTTTCAAATCATT
TGATTTAACGCCCACCATTATAGGAAGAAAGGTGCTTATCAGAAAGAAAT
CATAATACTTGTTATTTTGTATTTGCTCCCACAATTCTCTTTGGGTAGGC
ATATCCCCCTTGTATCCAATTTTCCTGAGGGTGGCTACCAAAACCGAAAA
ATATTCATTGATCAAGTTCTCTCCCATTTCCCAGCGCTGTTCCGGCTCCA
TCAGCATATATACGGAGTATGTCAAGTCCACTGTAATGGGGCACAGATTG
CTCAATTGAAAGTCGACTAACATCACGTCATCGTAGGCTCCCAACTCCTT
ATTGTGTCTAAACATCATATTGCGAAGATGGAAGTCACCGTGACACAGGA
CGTAGTACCGATCGTTTCGCCGATATTTGTGATATTCATGCATCTCAACC
TCTAGGCGTTTGCATGTAATTATCTTTAATCTTTTCAAAATGATGTTTAA
TACTTTCTTAGT
BO17474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 1263 | CG31104-RA | 669..1257 | 612..22 | 2850 | 99.4 | Minus |
CG31300-PA | 1269 | CG31300-RA | 784..824 | 501..461 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 729..1317 | 612..22 | 2890 | 99.5 | Minus |
CG31300-RA | 1474 | CG31300-RA | 747..1180 | 611..176 | 615 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25286256..25286665 | 612..201 | 1960 | 99.5 | Minus |
3R | 32079331 | 3R | 25286730..25286909 | 201..22 | 885 | 99.4 | Minus |
3R | 32079331 | 3R | 25284427..25284835 | 611..201 | 500 | 75.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:32:02 has no hits.
BO17474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:08 Download gff for
BO17474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-PA | 669..1263 | 15..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:40:50 Download gff for
BO17474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 729..1323 | 15..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:39 Download gff for
BO17474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 729..1323 | 15..612 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:39 Download gff for
BO17474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25286256..25286665 | 201..612 | 99 | -> | Minus |
3R | 25286731..25286915 | 15..200 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:40:50 Download gff for
BO17474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111978..21112387 | 201..612 | 99 | -> | Minus |
arm_3R | 21112453..21112637 | 15..200 | 97 | | Minus |
BO17474.5prime Sequence
638 bp (581 high quality bases) assembled on 2006-10-13
> BO17474.5prime
GAAGTTATCCTTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAA
BO17474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 1263 | CG31104-RA | 1..622 | 17..638 | 3110 | 100 | Plus |
CG13658-PA | 1251 | CG13658-RA | 421..467 | 431..477 | 185 | 95.7 | Plus |
CG31300-PA | 1269 | CG31300-RA | 150..185 | 160..195 | 180 | 100 | Plus |
CG31300-PA | 1269 | CG31300-RA | 285..326 | 295..336 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 61..682 | 17..638 | 3110 | 100 | Plus |
CG31300-RA | 1474 | CG31300-RA | 108..676 | 47..615 | 805 | 76.1 | Plus |
CG13658-RB | 1334 | CG13658-RB | 165..603 | 164..602 | 605 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25285533..25286081 | 17..565 | 2745 | 100 | Plus |
3R | 32079331 | 3R | 25283727..25284142 | 47..462 | 685 | 77.6 | Plus |
3R | 32079331 | 3R | 25287638..25287955 | 164..481 | 555 | 78.3 | Plus |
3R | 32079331 | 3R | 25289952..25290486 | 36..570 | 410 | 71.8 | Plus |
3R | 32079331 | 3R | 25286135..25286209 | 564..638 | 375 | 100 | Plus |
3R | 32079331 | 3R | 25304368..25304655 | 165..452 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:16:48 has no hits.
BO17474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:09 Download gff for
BO17474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-PA | 1..620 | 17..636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:13:09 Download gff for
BO17474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 54..682 | 11..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:36 Download gff for
BO17474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 54..682 | 11..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:36 Download gff for
BO17474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25285526..25286081 | 11..565 | 99 | -> | Plus |
3R | 25286137..25286209 | 566..638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:13:09 Download gff for
BO17474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111248..21111803 | 11..565 | 99 | -> | Plus |
arm_3R | 21111859..21111931 | 566..638 | 100 | | Plus |
BO17474.complete Sequence
1294 bp assembled on 2008-08-14
GenBank Submission: FJ634139
> BO17474.complete
GAAGTTATCCTTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAA
CATCATTTTGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTCCATCTTCGCAATATGATGTTTAGACACAATAAGGAG
TTGGGAGCCTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCT
GTGCCCCATTACAGTGGACTTGACATACTCCGTATATATGCTGATGGAGC
CGGAACAGCGCTGGGAAATGGGAGAGAACTTGATCAATGAATATTTTTCG
GTTTTGGTAGCCACCCTCAGGAAAATTGGATACAAGGGGGATATGCCTAC
CCAAAGAGAATTGTGGGAGCAAATACAAAATAACAAGTATTATGATTTCT
TTCTGATAAGCACCTTTCTTCCTATAATGGTGGGCGTTAAATCAAATGAT
TTGAAAATGCATGAGGCACTCCAAGATTCCCAGGCCCGACTGAAGTCCTA
CTTCCTAGACGACTATGTTCAAGATGTCTATAAGCTTTTGACCAAGTATG
AACAACTAGGATACTTTAAGGATCTAGCAAGCTTTCTAGACCAT
BO17474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1263 | CG31104-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
CG31300-RA | 1269 | CG31300-PA | 37..1109 | 47..1119 | 1525 | 76.1 | Plus |
CG13658-RB | 1269 | CG13658-PB | 154..592 | 164..602 | 590 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 61..1320 | 17..1276 | 6300 | 100 | Plus |
CG31300-RA | 1474 | CG31300-RA | 108..1180 | 47..1119 | 1525 | 76.1 | Plus |
CG13658-RB | 1334 | CG13658-RB | 165..603 | 164..602 | 590 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25285533..25286081 | 17..565 | 2745 | 100 | Plus |
3R | 32079331 | 3R | 25286135..25286665 | 564..1094 | 2655 | 100 | Plus |
3R | 32079331 | 3R | 25286730..25286912 | 1094..1276 | 915 | 100 | Plus |
3R | 32079331 | 3R | 25284305..25284835 | 564..1094 | 810 | 76.8 | Plus |
3R | 32079331 | 3R | 25283727..25284142 | 47..462 | 685 | 77.6 | Plus |
3R | 32079331 | 3R | 25287638..25287955 | 164..481 | 555 | 78.3 | Plus |
3R | 32079331 | 3R | 25289952..25290750 | 36..834 | 440 | 70.3 | Plus |
3R | 32079331 | 3R | 25304368..25304655 | 165..452 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:05 has no hits.
BO17474.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:14 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 54..1323 | 11..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:45 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1320 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:56 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1320 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:29 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1320 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:29 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25285533..25286081 | 17..565 | 100 | -> | Plus |
3R | 25286137..25286665 | 566..1094 | 100 | -> | Plus |
3R | 25286731..25286912 | 1095..1278 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:45 Download gff for
BO17474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111255..21111803 | 17..565 | 100 | -> | Plus |
arm_3R | 21111859..21112387 | 566..1094 | 100 | -> | Plus |
arm_3R | 21112453..21112634 | 1095..1278 | 98 | | Plus |
BO17474.pep Sequence
Translation from 16 to 1294
> BO17474.pep
MEGKNIEYNADELQAPAWLNAQFIGDILREYEQLPDLKVTDLQVSPATAQ
GDHYASVMFRTKVEYTTPKGKFFKPLIIKTMPEQEGHKKDMLSESHLFET
EIGMYCHALPEFERILREAGDNTKLFVPCIYHSLKPRQVMIFEDLVPQGY
TVIRDSPPSLGDLKLAFDKLAKWHAVSMKVINEQPYFLKEFQYGLFEMPT
IDTDPFITTGMTNFIEMLDKMPELRKYKHHFEKIKDNYMQRLEVEMHEYH
KYRRNDRYYVLCHGDFHLRNMMFRHNKELGAYDDVMLVDFQLSNLCPITV
DLTYSVYMLMEPEQRWEMGENLINEYFSVLVATLRKIGYKGDMPTQRELW
EQIQNNKYYDFFLISTFLPIMVGVKSNDLKMHEALQDSQARLKSYFLDDY
VQDVYKLLTKYEQLGYFKDLASFLDH
BO17474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 420 | CG31104-PA | 1..420 | 1..420 | 2244 | 100 | Plus |
CG31300-PA | 422 | CG31300-PA | 9..422 | 7..420 | 1647 | 72.2 | Plus |
CG11893-PA | 416 | CG11893-PA | 9..416 | 7..420 | 1555 | 69.1 | Plus |
CG13658-PB | 422 | CG13658-PB | 9..422 | 7..420 | 1416 | 62.3 | Plus |
CG31436-PA | 420 | CG31436-PA | 6..416 | 4..415 | 1201 | 54.4 | Plus |