Clone Sequence Records
BO17476.3prime Sequence
718 bp (692 high quality bases) assembled on 2006-10-13
> BO17476.3prime
ATGGTCTAGAAAGCTTGCGTTCGATGAGTTATGCTGACGATACATTGGGT
TCACGCCCTTAATGGGCAGGAAATGGCCTGCACTGTTGAAGACCCACTGC
TCCAGCGAAACCACGTCGTCGTCGGAGAAGAGCAGATACAAATACTTCAG
AGTGGAGCCCAAGAAGAAGGACCCCTGCACGTCATCCGGTTCCGAAGTAA
CGTTGTTAACGTCCATCACTCCAGTATATCCGTAGGGCATTCGGCAGTAC
TTCTCTATCGCCTGCACCATCTCCAATCCCCACAAGCGGTACTGTGGATG
ATGGGTTATGCGCCACAGAACCAAGTAAGTTTCCGCGACTTCCGGCCGTA
AATTGTAATAGTTCCTCTGGAGCGGCTCTATTTCCTGCTGGCTTTCCTCC
GTGAAGGCAAACGTATCCGGACCCAACCGAGTGGGAGAACTCCAGTAGCT
GTCGTGACAAGTATCTGTGAGGCCTATGCCAATATGGGCATACTTTTCCC
AGTGCTTCATTTGGGTTTCTGCTGCTCCCAGGACAAAAAGCCCGCCGGCA
AAGCAATCGGAGTGCCTCATACGATGGAAAAGAGTGCCATTCCTGAACGT
GGACACGTAGGTCACGTCCTCGGGATTGATGACAACCAGATTTTGAGCCA
CAGCTAGCATGGCTTCTTTGAAGGTATCAGCATTTTGAGTATCAGTTCTC
CCGGACTGAATCCATGAC
BO17476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 1581 | CG31202-RA | 879..1578 | 718..19 | 3500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 882..1581 | 718..19 | 3500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928806..29929505 | 19..718 | 3500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:24:09 has no hits.
BO17476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:11 Download gff for
BO17476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-PA | 879..1581 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:40 Download gff for
BO17476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 882..1589 | 10..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:51 Download gff for
BO17476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 882..1589 | 10..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:51 Download gff for
BO17476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29928798..29929505 | 10..718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:40 Download gff for
BO17476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25754520..25755227 | 10..718 | 99 | | Plus |
BO17476.5prime Sequence
725 bp (723 high quality bases) assembled on 2006-10-13
> BO17476.5prime
GAAGTTATCAGTCGACATGTACTTCTTTTTCTTCGTTATTCGACGGGCGC
AATATAATTGGTATACGGCAAATACCAAATCGAGAATTCGGATCATAGCT
ACCGGAATTTTCACAGTCGGCGTAATAGTGATTACATATATTCAGTGCCG
TGCAATGATGAGAGAATCCTTTCAGAAGAACATACCATCGAATGACAATT
CATTGAAGGATATGAATCCTGACGATATGCGGGCGAAGATAAAGGAGATG
ATGATGCACGCCTGGCGAAACTATGCTCGCGTTGTTTGGGGCACCAACGA
GTTTCGTCCGATTTCCCGTCGTGTCCATTTTGGTGGCGACTTCGCAACCT
ACAAGCTTGGTGCCACTATCATCGAGAGCTTGGACACTTTGCATTTGATG
GGTCTGAACAAAGAGTTGAGGCGTTCTCGGGATTGGATAGAGAAATCCTT
CCATTTGGACCGGGTTGATGAAGCGTTGTCCGTTTATGAACTGACATCCA
GGCTGCTGTGTCCCATGCTCACTCTATATTCCCTCACCGGGGATTCCCTC
TACATGGACAAGGCCATCCATATTGCCGATAAGATCCTGCCTGCCTTCGA
CACGCCAACTGGTATACCCAGACGACTAGTGGTCCCAAAAGAAGGCAGCA
CCCTCACGAAGTACCTAAGTGATATCTCTCGCACTTCTGATTTTGGCTCT
CTGCACCTGGAGTTCTACTATCTCA
BO17476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 1581 | CG31202-RA | 1..709 | 17..725 | 3520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 4..712 | 17..725 | 3530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29929675..29930383 | 725..17 | 3530 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:32:14 has no hits.
BO17476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:12 Download gff for
BO17476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-PA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:40:51 Download gff for
BO17476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..711 | 15..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:41 Download gff for
BO17476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..711 | 15..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:41 Download gff for
BO17476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29929676..29930388 | 8..724 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:40:51 Download gff for
BO17476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25755398..25756110 | 8..724 | 99 | | Minus |
BO17476.complete Sequence
1612 bp assembled on 2008-08-14
GenBank Submission: FJ634140
> BO17476.complete
GAAGTTATCAGTCGACATGTACTTCTTTTTCTTCGTTATTCGACGGGCGC
AATATAATTGGTATACGGCAAATACCAAATCGAGAATTCGGATCATAGCT
ACCGGAATTTTCACAGTCGGCGTAATAGTGATTACATATATTCAGTGCCG
TGCAATGATGAGAGAATCCTTTCAGAAGAACATACCATCGAATGACAATT
CATTGAAGGATATGAATCCTGACGATATGCGGGCGAAGATAAAGGAGATG
ATGATGCACGCCTGGCGAAACTATGCTCGCGTTGTTTGGGGCACCAACGA
GTTTCGTCCGATTTCCCGTCGTGTCCATTTTGGTGGCGACTTCGCAACCT
ACAAGCTTGGTGCCACTATCATCGAGAGCTTGGACACTTTGCATTTGATG
GGTCTGAACAAAGAGTTGAGGCGTTCTCGGGATTGGATAGAGAAATCCTT
CCATTTGGACCGGGTTGATGAAGCGTTGTCCGTTTATGAACTGACATCCA
GGCTGCTGTGTCCCATGCTCACTCTATATTCCCTCACCGGGGATTCCCTC
TACATGGACAAGGCCATCCATATTGCCGATAAGATCCTGCCTGCCTTCGA
CACGCCAACTGGTATACCCAGACGACTAGTGGTCCCAAAAGAAGGCAGCA
CCCTCACGAAGTACCTAAGTGATATCTCTCGCACTTCTGAATTTGGCTCT
CTGCACCTGGAGTTCTACTATCTCAGTGAAGTCTCTGGATATCCGGTGTA
CAGGGAGCGAGTGGATGCTATCCGCGAGATATTAGCTAAAACAACCAGGC
CCAATGGCCTTTATCCCAATGCCTATTGCACAAAATTTGGTAAGTGGGAA
AATTACAACTGCTCCATGCACCGACTTTATGATACCCTGCTAAAGTCATG
GATTCAGTCCGGGAGAACTGATACTCAAAATGCTGATACCTTCAAAGAAG
CCATGCTAGCTGTGGCTCAAAATCTGGTTGTCATCAATCCCGAGGACGTG
ACCTACGTGTCCACGTTCAGGAATGGCACTCTTTTCCATCGTATGAGGCA
CTCCGATTGCTTTGCCGGCGGGCTTTTTGTCCTGGGAGCAGCAGAAACCC
AAATGAAGCACTGGGAAAAGTATGCCCATATTGGCATAGGCCTCACAGAT
ACTTGTCACGACAGCTACTGGAGTTCTCCCACTCGGTTGGGTCCGGATAC
GTTTGCCTTCACGGAGGAAAGCCAGCAGGAAATAGAGCCGCTCCAGAGGA
ACTATTACAATTTACGGCCGGAAGTCGCGGAAACTTACTTGGTTCTGTGG
CGCATAACCCATCATCCACAGTACCGCTTGTGGGGATTGGAGATGGTGCA
GGCGATAGAGAAGTACTGCCGAATGCCCTACGGATATACTGGAGTGATGG
ACGTTAACAACGTTACTTCGGAACCGGATGACGTGCAGGGGTCCTTCTTC
TTGGGCTCCACTCTGAAGTATTTGTATCTGCTCTTCTCCGACGACGACGT
GGTTTCGCTGGAGCAGTGGGTCTTCAACAGTGCAGGCCATTTCCTGCCCA
TTAAGGGCGTGAACCCAATGTATCGTCAGCATAACTCATCGAACGCAAGC
TTTCTAGACCAT
BO17476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1581 | CG31202-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 4..1581 | 17..1594 | 7890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928806..29930383 | 1594..17 | 7890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:26 has no hits.
BO17476.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:35 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..1589 | 15..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:53 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1581 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:46 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1581 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:50 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1581 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:50 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29928804..29930383 | 17..1596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:53 Download gff for
BO17476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25754526..25756105 | 17..1596 | 99 | | Minus |
BO17476.pep Sequence
Translation from 16 to 1612
> BO17476.pep
MYFFFFVIRRAQYNWYTANTKSRIRIIATGIFTVGVIVITYIQCRAMMRE
SFQKNIPSNDNSLKDMNPDDMRAKIKEMMMHAWRNYARVVWGTNEFRPIS
RRVHFGGDFATYKLGATIIESLDTLHLMGLNKELRRSRDWIEKSFHLDRV
DEALSVYELTSRLLCPMLTLYSLTGDSLYMDKAIHIADKILPAFDTPTGI
PRRLVVPKEGSTLTKYLSDISRTSEFGSLHLEFYYLSEVSGYPVYRERVD
AIREILAKTTRPNGLYPNAYCTKFGKWENYNCSMHRLYDTLLKSWIQSGR
TDTQNADTFKEAMLAVAQNLVVINPEDVTYVSTFRNGTLFHRMRHSDCFA
GGLFVLGAAETQMKHWEKYAHIGIGLTDTCHDSYWSSPTRLGPDTFAFTE
ESQQEIEPLQRNYYNLRPEVAETYLVLWRITHHPQYRLWGLEMVQAIEKY
CRMPYGYTGVMDVNNVTSEPDDVQGSFFLGSTLKYLYLLFSDDDVVSLEQ
WVFNSAGHFLPIKGVNPMYRQHNSSNASFLDH
BO17476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 526 | CG31202-PA | 1..526 | 1..526 | 2813 | 100 | Plus |
| alpha-Man-I-PO | 667 | CG42275-PO | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PN | 667 | CG42275-PN | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PM | 667 | CG42275-PM | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PL | 667 | CG42275-PL | 194..656 | 65..521 | 1223 | 51.2 | Plus |
