Clone Sequence Records
BO17478.3prime Sequence
827 bp (692 high quality bases) assembled on 2006-10-13
> BO17478.3prime
ATGGTCTAGAAAGCTTGCCCGCTTTGCCTTGCCTACACTAAATCGCGATG
CAATACTACTACGCGTAGATGATGCATGCTCCGGATCTCTATCCTCCTTG
CGTATTTTGGACATGATCTTAAAATAGTTGGAGATGATCTGATCGACCCT
TTGTCCTGAAGATGTGCTTGCCAACTCCTTTTCACAACGCGAGACTACGT
TCGTGAGTAGACCTCCGGACCGAAAGAAGGCTATGTTGATGTCTCGTTTG
ACCCACTTGCAGATCTGATGGTGTGTGACCCGCTCATGAACCTTACAGAG
CTTGTAGAAATGTTCATATTTCTCTTTCATTGTACGCATCTGAAGCTCAC
CTATCTTGGGTATTTGCAGGTGAGGTCTCCTGATTATATGGTACGGATCG
AACTTTTCCGAGAAGTTTGAGAAGCGGACAGCCGGCCAGTCGAGACTAAG
AAGCGTGTTGTAGAGGCTCTTGGGATGGCCCATGATGCCGTGCGATACAT
CTATAAAGCTGAGCTGCGAACCGGGCACAATGTACTCCAGCTCAATCTCG
GCAATGCGGATATCGTTTCCTCTGTACTTGCGTTCGCCTATCCACAAAAT
GGGCAAATCCTCTTCAGGAACCAGCTTTAGCTCCTGGACTAGAGGCGATT
CCTGAATTCGATAATTGTAGTTCTTTTTGTTTCTGCCGTAGAGAAGACTG
CGCTCCGCCTCCGTGAACTCGAGGTATTCTGGGTGGGCGGAAACAAAGTG
CTCGGAGCGGAAAAGGCGATTGATCTCAATTTCGATTACGTAATACGCCC
GGCGATGCATACAGATCCAGACTATTT
BO17478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 1443 | CG31467-RA | 632..1440 | 827..19 | 4020 | 99.8 | Minus |
CG31391-PA | 1443 | CG31391-RA | 632..800 | 827..659 | 320 | 87.5 | Minus |
CG31391-PA | 1443 | CG31391-RA | 1195..1289 | 264..170 | 300 | 92.6 | Minus |
CG14689-PA | 1464 | CG14689-RA | 895..929 | 558..524 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 761..1569 | 827..19 | 4030 | 99.9 | Minus |
CG31391-RA | 1704 | CG31391-RA | 718..1453 | 827..92 | 1175 | 77.6 | Minus |
CG14689-RA | 1661 | CG14689-RA | 743..1153 | 819..409 | 420 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705295..10706103 | 19..827 | 4030 | 99.9 | Plus |
3R | 32079331 | 3R | 10703623..10704358 | 92..827 | 1160 | 77.2 | Plus |
3R | 32079331 | 3R | 10710096..10710506 | 409..819 | 390 | 73 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:05:11 has no hits.
BO17478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:14 Download gff for
BO17478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-PA | 632..1443 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:43 Download gff for
BO17478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 761..1572 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:30 Download gff for
BO17478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 761..1572 | 15..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:30 Download gff for
BO17478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705291..10706103 | 15..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:43 Download gff for
BO17478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531013..6531825 | 15..827 | 99 | | Plus |
BO17478.5prime Sequence
879 bp (761 high quality bases) assembled on 2006-10-13
> BO17478.5prime
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAGAAGGATTTGCCCATTTT
BO17478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 1443 | CG31467-RA | 1..863 | 17..879 | 4265 | 99.7 | Plus |
CG31391-PA | 1443 | CG31391-RA | 542..800 | 558..816 | 670 | 90.3 | Plus |
CG31391-PA | 1443 | CG31391-RA | 13..200 | 29..216 | 565 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 130..992 | 17..879 | 4285 | 99.8 | Plus |
CG31391-RA | 1704 | CG31391-RA | 99..947 | 29..877 | 1755 | 80.7 | Plus |
CG14689-RA | 1661 | CG14689-RA | 109..302 | 16..209 | 400 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705872..10706734 | 879..17 | 4285 | 99.8 | Minus |
3R | 32079331 | 3R | 10704190..10704977 | 816..29 | 1750 | 81.5 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 400 | 80.4 | Minus |
3R | 32079331 | 3R | 10710429..10710723 | 733..439 | 215 | 71.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:31:00 has no hits.
BO17478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:15 Download gff for
BO17478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:17 Download gff for
BO17478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..992 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:23 Download gff for
BO17478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..992 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:23 Download gff for
BO17478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705872..10706734 | 17..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:17 Download gff for
BO17478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531594..6532456 | 17..879 | 99 | | Minus |
BO17478.complete Sequence
1474 bp assembled on 2006-10-11
GenBank Submission: FJ634141
> BO17478.complete
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGATAGGCGAACGCAAGTA
CAGAGGAAACGATATCCGCATTGCCGAGATTGAGCTGGAGTACATTGTGC
CCGGTTCGCAGCTCAGCTTTATAGATGTATCGCACGGCATCATGGGCCAT
CCCAAGAGCCTCTACAACACGCTTCTTAGTCTCGACTGGCCGGCTGTCCG
CTTCTCAAACTTCTCGGAAAAGTTCGATCCGTACCATATAATCAGGAGAC
CTCACCTGCAAATACCCAAGATAGGTGAGCTTCAGATGCGTACAATGAAA
GAGAAATATGAACATTTCTACAAGCTCTGTAAGGTTCATGAGCGGGTCAC
ACACCATCAGATCTGCAAGTGGGTCAAACGAGACATCAACATAGCCTTCT
TTCGGTCCGGAGGTCTACTCACGAACGTAGTCTCGCGTTGTGAAAAGGAG
TTGGCAAGCACATCTTCAGGACAAAGGGTCGATCAGATCATCTCCAACTA
TTTTAAGATCATGTCCAAAATACGCAAGGAGGATAGAGATCCGGAGCATG
CATCATCTACGCGTAGTAGTATTGCATCGCGATTTAGTGTAGGCAAGGCA
AAGCGGGCAAGCTTTCTAGACCAT
BO17478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1443 | CG31467-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
CG31391-RA | 1443 | CG31391-PA | 13..1367 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1464 | CG14689-PA | 417..1044 | 439..1066 | 470 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 130..1569 | 17..1456 | 7200 | 100 | Plus |
CG31391-RA | 1704 | CG31391-RA | 99..1453 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1661 | CG14689-RA | 526..1153 | 439..1066 | 470 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705295..10706734 | 1456..17 | 7200 | 100 | Minus |
3R | 32079331 | 3R | 10703623..10704977 | 1383..29 | 2380 | 78.4 | Minus |
3R | 32079331 | 3R | 10710096..10710723 | 1066..439 | 470 | 71.7 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 400 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:03 has no hits.
BO17478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:21 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 1..1443 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:18 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1572 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:03 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1569 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:21 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1572 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:21 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1569 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:21 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705293..10706734 | 17..1458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:03 Download gff for
BO17478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531015..6532456 | 17..1458 | 99 | | Minus |
BO17478.pep Sequence
Translation from 16 to 1474
> BO17478.pep
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKRASFLDH
BO17478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 480 | CG31467-PA | 1..480 | 1..480 | 2536 | 100 | Plus |
CG31391-PA | 480 | CG31391-PA | 1..456 | 1..456 | 1944 | 78.5 | Plus |
CG14689-PA | 487 | CG14689-PA | 1..469 | 1..469 | 1685 | 68.2 | Plus |