Clone BO17478 Report

Search the DGRC for BO17478

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG31467-RA
Protein status:BO17478.pep: validated full length
Sequenced Size:1474

Clone Sequence Records

BO17478.3prime Sequence

827 bp (692 high quality bases) assembled on 2006-10-13

> BO17478.3prime
ATGGTCTAGAAAGCTTGCCCGCTTTGCCTTGCCTACACTAAATCGCGATG
CAATACTACTACGCGTAGATGATGCATGCTCCGGATCTCTATCCTCCTTG
CGTATTTTGGACATGATCTTAAAATAGTTGGAGATGATCTGATCGACCCT
TTGTCCTGAAGATGTGCTTGCCAACTCCTTTTCACAACGCGAGACTACGT
TCGTGAGTAGACCTCCGGACCGAAAGAAGGCTATGTTGATGTCTCGTTTG
ACCCACTTGCAGATCTGATGGTGTGTGACCCGCTCATGAACCTTACAGAG
CTTGTAGAAATGTTCATATTTCTCTTTCATTGTACGCATCTGAAGCTCAC
CTATCTTGGGTATTTGCAGGTGAGGTCTCCTGATTATATGGTACGGATCG
AACTTTTCCGAGAAGTTTGAGAAGCGGACAGCCGGCCAGTCGAGACTAAG
AAGCGTGTTGTAGAGGCTCTTGGGATGGCCCATGATGCCGTGCGATACAT
CTATAAAGCTGAGCTGCGAACCGGGCACAATGTACTCCAGCTCAATCTCG
GCAATGCGGATATCGTTTCCTCTGTACTTGCGTTCGCCTATCCACAAAAT
GGGCAAATCCTCTTCAGGAACCAGCTTTAGCTCCTGGACTAGAGGCGATT
CCTGAATTCGATAATTGTAGTTCTTTTTGTTTCTGCCGTAGAGAAGACTG
CGCTCCGCCTCCGTGAACTCGAGGTATTCTGGGTGGGCGGAAACAAAGTG
CTCGGAGCGGAAAAGGCGATTGATCTCAATTTCGATTACGTAATACGCCC
GGCGATGCATACAGATCCAGACTATTT

BO17478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 1443 CG31467-RA 632..1440 827..19 4020 99.8 Minus
CG31391-PA 1443 CG31391-RA 632..800 827..659 320 87.5 Minus
CG31391-PA 1443 CG31391-RA 1195..1289 264..170 300 92.6 Minus
CG14689-PA 1464 CG14689-RA 895..929 558..524 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 761..1569 827..19 4030 99.9 Minus
CG31391-RA 1704 CG31391-RA 718..1453 827..92 1175 77.6 Minus
CG14689-RA 1661 CG14689-RA 743..1153 819..409 420 74.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705295..10706103 19..827 4030 99.9 Plus
3R 32079331 3R 10703623..10704358 92..827 1160 77.2 Plus
3R 32079331 3R 10710096..10710506 409..819 390 73 Plus
Blast to na_te.dros performed on 2015-02-12 04:05:11 has no hits.

BO17478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:14 Download gff for BO17478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-PA 632..1443 15..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:43 Download gff for BO17478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 761..1572 15..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:30 Download gff for BO17478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 761..1572 15..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:30 Download gff for BO17478.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10705291..10706103 15..827 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:43 Download gff for BO17478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531013..6531825 15..827 99   Plus

BO17478.5prime Sequence

879 bp (761 high quality bases) assembled on 2006-10-13

> BO17478.5prime
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAGAAGGATTTGCCCATTTT

BO17478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 1443 CG31467-RA 1..863 17..879 4265 99.7 Plus
CG31391-PA 1443 CG31391-RA 542..800 558..816 670 90.3 Plus
CG31391-PA 1443 CG31391-RA 13..200 29..216 565 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 130..992 17..879 4285 99.8 Plus
CG31391-RA 1704 CG31391-RA 99..947 29..877 1755 80.7 Plus
CG14689-RA 1661 CG14689-RA 109..302 16..209 400 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705872..10706734 879..17 4285 99.8 Minus
3R 32079331 3R 10704190..10704977 816..29 1750 81.5 Minus
3R 32079331 3R 10710947..10711140 209..16 400 80.4 Minus
3R 32079331 3R 10710429..10710723 733..439 215 71.5 Minus
Blast to na_te.dros performed on 2015-02-10 21:31:00 has no hits.

BO17478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:15 Download gff for BO17478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:17 Download gff for BO17478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..992 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:23 Download gff for BO17478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..992 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:23 Download gff for BO17478.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10705872..10706734 17..879 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:17 Download gff for BO17478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531594..6532456 17..879 99   Minus

BO17478.complete Sequence

1474 bp assembled on 2006-10-11

GenBank Submission: FJ634141

> BO17478.complete
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGATAGGCGAACGCAAGTA
CAGAGGAAACGATATCCGCATTGCCGAGATTGAGCTGGAGTACATTGTGC
CCGGTTCGCAGCTCAGCTTTATAGATGTATCGCACGGCATCATGGGCCAT
CCCAAGAGCCTCTACAACACGCTTCTTAGTCTCGACTGGCCGGCTGTCCG
CTTCTCAAACTTCTCGGAAAAGTTCGATCCGTACCATATAATCAGGAGAC
CTCACCTGCAAATACCCAAGATAGGTGAGCTTCAGATGCGTACAATGAAA
GAGAAATATGAACATTTCTACAAGCTCTGTAAGGTTCATGAGCGGGTCAC
ACACCATCAGATCTGCAAGTGGGTCAAACGAGACATCAACATAGCCTTCT
TTCGGTCCGGAGGTCTACTCACGAACGTAGTCTCGCGTTGTGAAAAGGAG
TTGGCAAGCACATCTTCAGGACAAAGGGTCGATCAGATCATCTCCAACTA
TTTTAAGATCATGTCCAAAATACGCAAGGAGGATAGAGATCCGGAGCATG
CATCATCTACGCGTAGTAGTATTGCATCGCGATTTAGTGTAGGCAAGGCA
AAGCGGGCAAGCTTTCTAGACCAT

BO17478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1443 CG31467-PA 1..1440 17..1456 7200 100 Plus
CG31391-RA 1443 CG31391-PA 13..1367 29..1383 2380 78.4 Plus
CG14689-RA 1464 CG14689-PA 417..1044 439..1066 470 71.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 130..1569 17..1456 7200 100 Plus
CG31391-RA 1704 CG31391-RA 99..1453 29..1383 2380 78.4 Plus
CG14689-RA 1661 CG14689-RA 526..1153 439..1066 470 71.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705295..10706734 1456..17 7200 100 Minus
3R 32079331 3R 10703623..10704977 1383..29 2380 78.4 Minus
3R 32079331 3R 10710096..10710723 1066..439 470 71.7 Minus
3R 32079331 3R 10710947..10711140 209..16 400 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 20:59:03 has no hits.

BO17478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:21 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 17..1460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:18 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1572 17..1460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:03 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1569 17..1458 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:21 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1572 17..1460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:21 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1569 17..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:21 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10705293..10706734 17..1458 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:03 Download gff for BO17478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531015..6532456 17..1458 99   Minus

BO17478.pep Sequence

Translation from 16 to 1474

> BO17478.pep
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKRASFLDH

BO17478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 480 CG31467-PA 1..480 1..480 2536 100 Plus
CG31391-PA 480 CG31391-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..469 1..469 1685 68.2 Plus