Clone Sequence Records
BO17480.3prime Sequence
858 bp (755 high quality bases) assembled on 2006-10-13
> BO17480.3prime
ATGGTCTAGAAAGCTTGCATTTGGAATATTGAATAGTTGGGCCACATGAT
GGTAGCTACCACCGCATGTCTGAGCAATACAAAGCTTTCTTAGCAGAGTG
CTTGCGTTTTCTAGACATATCTTGATTTCATTTTGATTCATACGATTGAA
TACATTATGATCCTTAGCCAAAAAGAACTCCAGTCTACGAGCGCGTAGAT
GATCCACCAAATGACTCCACATCTCAACCAATAGGGTGCCCAGGTCTCTT
TCCCAGTCAGCACTTTCGAGGCGATGAAGCAAAACTGTTTTCAACATGTA
GCTGGACAAGTGAGGCAATTTCCTGGCGTGGGCATCCCGCAATCCTTTCA
TCAGCCGTAGAACGTTCTTCAAATTATCCTTGCCCTTCATAATTTCGCGC
TCCCAATGTGGTGCACAAACCATGAATGTGGTTCTCGGTTTAGCCGACTT
CTTCTTCTGTTGCGGAATGGCGAACCATGGCCAATTATTGCTAACATCAG
CAGGAACCGGGCAAATATCAAACGGCCATTGGCTTCCAGAGAATTCGAAT
GCTGGTACCAAATCAAAAGATATCGAGCGACTACCACAAACGGCTAAAAT
GGTATGGGCACAACCATACCCCTCAAGAGTATAGGTTAATTTGTAGACTC
GATTACTGGTAGTGGCAATTGTCTGATTAGACCTGAATACCTTGCGGAAT
GCATTGCGTAGCCAGTCTTGAAGTACAATACGATGGATGCGTTGGGGATT
GATTACGGTGAGATCAGCCTCTAAATAAATAAACCCTTTGGTCGATCCGA
GTCGGTCGGATATCAAATGGAAACTTTAGTTTTCTGTGCAGATCAAATTC
TTCGGGCA
BO17480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 1041 | CG7194-RA | 269..1038 | 788..19 | 3850 | 100 | Minus |
| CG7194-PA | 1041 | CG7194-RA | 200..270 | 858..788 | 280 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 269..1107 | 858..19 | 4130 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302622..8303460 | 19..858 | 4105 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:48:04 has no hits.
BO17480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:16 Download gff for
BO17480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-PA | 201..1041 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:02 Download gff for
BO17480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 270..1111 | 14..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:43 Download gff for
BO17480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 270..1111 | 14..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:43 Download gff for
BO17480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302618..8303459 | 14..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:02 Download gff for
BO17480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295718..8296559 | 14..857 | 99 | | Plus |
BO17480.5prime Sequence
883 bp (723 high quality bases) assembled on 2006-10-13
> BO17480.5prime
GAAGTTATCAGTCGACATGAGTACCGCTAATCATTTTCAAAGAATTCTTG
AGAAATTGTCAATCTCTGACAATGAAAGGGCCGTATATACCAAGGAAGCC
GAGGAAATTCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGACAAAAC
CTTTCGCCAGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTTGGATC
GCGTCAAGCTAAATTTGCCCGATGAATTTGATCTGCACATGAAACTAAAG
TTTCCATTTGATATCCGACCGACTCGGATCGACCAAGGGTTTATTTATTT
AGAGGCTGATCTCACCGTAATCAATCCCCAACGCATCCATCGTATTGTAC
TTCAAGACTGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTAATCAG
ACAATTGCCACTACCAGTAATCGAGTCTACAAATTAACCTATACTCTTGA
GGGGTATGGTTGTGCCCATACCATTTTAGCCGTTTGTGGTAGTCGCTCGA
TATCTTTTGATTTGGTACCAGCATTCGAATTCTCTGGAAGCCAATGGCCG
TTTGATATTTGCCCGGTTCCTGCTGATGTTAGCAATAATTGGCCATGGTT
CGCCATTCCGCAACAGAAGAAGAAGTCGGCTAAACCGAGAACCACATTCA
TGGTTTGTGCACCACATTGGGAGCGCGAAATTATGAAGGGCAAGGATAAT
TTGAAGAACGTTCTACGGCTGATGAAAGGATTGCGGGATGCCCACGCCAG
GAAATTGCCTCACTTGTCCAGCTACATGTTTGAAACAGTTTTGCTTCATC
GCCTCGAAAGTGCTGACTGGGAAAGAGACCTGGGCACCCTATTGTTTGAG
ATGTGGAGTCATTTGGTGGATCATCTACGCGCT
BO17480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 1041 | CG7194-RA | 1..867 | 17..883 | 4260 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 70..936 | 17..883 | 4290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302793..8303492 | 883..184 | 3455 | 99.6 | Minus |
| 3L | 28110227 | 3L | 8303821..8303990 | 186..17 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:46:27 has no hits.
BO17480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:17 Download gff for
BO17480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:24 Download gff for
BO17480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..936 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:03 Download gff for
BO17480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..936 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:03 Download gff for
BO17480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302793..8303490 | 186..883 | 99 | <- | Minus |
| 3L | 8303822..8303990 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:24 Download gff for
BO17480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295893..8296590 | 186..883 | 99 | <- | Minus |
| arm_3L | 8296922..8297090 | 17..185 | 100 | | Minus |
BO17480.complete Sequence
1072 bp assembled on 2006-10-11
GenBank Submission: FJ634142
> BO17480.complete
GAAGTTATCAGTCGACATGAGTACCGCTAATCATTTTCAAAGAATTCTTG
AGAAATTGTCAATCTCTGACAATGAAAGGGCCGTATATACCAAGGAAGCC
GAGGAAATTCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGACAAAAC
CTTTCGCCAGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTTGGATC
GCGTCAAGCTAAATTTGCCCGATGAATTTGATCTGCACATGAAACTAAAG
TTTCCATTTGATATCCGACCGACTCGGATCGACCAAGGGTTTATTTATTT
AGAGGCTGATCTCACCGTAATCAATCCCCAACGCATCCATCGTATTGTAC
TTCAAGACTGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTAATCAG
ACAATTGCCACTACCAGTAATCGAGTCTACAAATTAACCTATACTCTTGA
GGGGTATGGTTGTGCCCATACCATTTTAGCCGTTTGTGGTAGTCGCTCGA
TATCTTTTGATTTGGTACCAGCATTCGAATTCTCTGGAAGCCAATGGCCG
TTTGATATTTGCCCGGTTCCTGCTGATGTTAGCAATAATTGGCCATGGTT
CGCCATTCCGCAACAGAAGAAGAAGTCGGCTAAACCGAGAACCACATTCA
TGGTTTGTGCACCACATTGGGAGCGCGAAATTATGAAGGGCAAGGATAAT
TTGAAGAACGTTCTACGGCTGATGAAAGGATTGCGGGATGCCCACGCCAG
GAAATTGCCTCACTTGTCCAGCTACATGTTGAAAACAGTTTTGCTTCATC
GCCTCGAAAGTGCTGACTGGGAAAGAGACCTGGGCACCCTATTGGTTGAG
ATGTGGAGTCATTTGGTGGATCATCTACGCGCTCGTAGACTGGAGTTCTT
TTTGGCTAAGGATCATAATGTATTCAATCGTATGAATCAAAATGAAATCA
AGATATGTCTAGAAAACGCAAGCACTCTGCTAAGAAAGCTTTGTATTGCT
CAGACATGCGGTGGTAGCTACCATCATGTGGCCCAACTATTCAATATTCC
AAATGCAAGCTTTCTAGACCAT
BO17480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1041 | CG7194-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 70..1107 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302622..8303492 | 1054..184 | 4355 | 100 | Minus |
| 3L | 28110227 | 3L | 8303821..8303990 | 186..17 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:17:36 has no hits.
BO17480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:15 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 1..1041 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:31 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1111 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:20 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1107 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:15 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 46..1087 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:16 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1107 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:16 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8303822..8303990 | 17..185 | 100 | | Minus |
| 3L | 8302620..8303490 | 186..1056 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:20 Download gff for
BO17480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295720..8296590 | 186..1056 | 99 | <- | Minus |
| arm_3L | 8296922..8297090 | 17..185 | 100 | | Minus |
BO17480.pep Sequence
Translation from 16 to 1072
> BO17480.pep
MSTANHFQRILEKLSISDNERAVYTKEAEEIQNYVVDELKRVDKTFRQVF
DGLSLGGSYLDRVKLNLPDEFDLHMKLKFPFDIRPTRIDQGFIYLEADLT
VINPQRIHRIVLQDWLRNAFRKVFRSNQTIATTSNRVYKLTYTLEGYGCA
HTILAVCGSRSISFDLVPAFEFSGSQWPFDICPVPADVSNNWPWFAIPQQ
KKKSAKPRTTFMVCAPHWEREIMKGKDNLKNVLRLMKGLRDAHARKLPHL
SSYMLKTVLLHRLESADWERDLGTLLVEMWSHLVDHLRARRLEFFLAKDH
NVFNRMNQNEIKICLENASTLLRKLCIAQTCGGSYHHVAQLFNIPNASFL
DH
BO17480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 346 | CG7194-PA | 1..346 | 1..346 | 1835 | 100 | Plus |
| CG12970-PC | 378 | CG12970-PC | 23..336 | 21..310 | 191 | 26.7 | Plus |
