Clone Sequence Records
BO17481.3prime Sequence
786 bp (784 high quality bases) assembled on 2006-10-13
> BO17481.3prime
ATGGTCTAGAAAGCTTGCAACCTTTAGGCTCTTTCTGACCTTAGTTTGCG
AACACCTAGTATTTGATTTTTGATTTTTTATTTGAGTTGGCGTCAACTTA
ACGTCTTCCTGACGAGAAAATTCCGTGCAAGACTTGAATTCTTCTTTCTT
GGTTAATTCATCTTCATCAATAAGTGTATCCGCTTTACGCGGATGCACTC
TTGCCGTTTGTGCTTGGTTCAATAGCAATTTTCTTAATTTTAGAACAGCT
TTTTCTGGATTTAAATCGTGTTTGTTTAATATTGACTCCACGCGTGACAA
CTTGTTGGTCAGCTTTTCCTTATCAATCTGTAAGTTTTGTAGCTGTAATT
CTAGTTTGTCGATCAAATTAAGATTGGATCGCAGATCACTCGTTTCCTGC
TCATACTTTTCGCATACAGTGTTTAGTTGCTCGTTTTCTGGATTTGGTCT
TGGAATTTCCGAGATTTTTGACGTTGCGTCTGTGCCAGTCTTCTCATCAT
TCTTACTGCTATTGAGCTTTTTCACAAACTGATCTTGCAAATAACGTTTT
TGGGCTTTAAGTTCCAACTCATCTTCGCTATCCGATGGCAGAGAAACGTG
CTTGCTCTCGGCAAGGAATTGTGAGGACTTTTTGATATTCTTTGTCTGCT
GTGGTTCTGGATTCGCCTGTTCGGTTGGCTTCTCCCTACGAATACTCTTA
AAGATGCCCGGTCTGAATGATAGAGCATCGAGGCTGTTTTGCCTCTCGAA
TCGGACGGGCTTTTTTGCATAATTAAAGACCATCGA
BO17481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-PA | 1275 | CG31907-RA | 505..1272 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-RB | 1574 | CG31907-RB | 583..1350 | 786..19 | 3840 | 100 | Minus |
| CG31907-RA | 1470 | CG31907-RA | 583..1350 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7059438..7060205 | 19..786 | 3840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:09:37 has no hits.
BO17481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:18 Download gff for
BO17481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-PA | 506..1275 | 16..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:10 Download gff for
BO17481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 584..1356 | 13..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:25:45 Download gff for
BO17481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 584..1356 | 13..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:25:45 Download gff for
BO17481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7059432..7060204 | 13..785 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:10 Download gff for
BO17481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7059432..7060204 | 13..785 | 99 | | Plus |
BO17481.5prime Sequence
882 bp (728 high quality bases) assembled on 2006-10-13
> BO17481.5prime
GAAGTTATCAGTCGACATGGCACTTTCCGCAACGAAGGACACTAGTCCAT
GGACCAACATGGTGAAGAGGGTAACAGCGAGCAAATACGATGTAGTCTCG
GTCAAGACGCTGCTGATGTTTATCAACAGCAAACTGGATTGCGAATTGCG
AGGCTTTGAGGATCTGAAAACAGGAGCAGTATATTGCCAACTGATGCACA
GACTCTTTCCCAATTCGATACAAATTCATAAGGTCAAGTTTTATACGAAC
GACATCAGCGACTTTCAGTTAAATTTCCGGTTACTAAACAATTGCTTTCA
AAAACTAAGAGTAACCGTTTATATGCCAGTGCATGAGTTAACTCTGGGAC
ACAATCAAGTGGTCTTCTGCAATTGGATATACAAGTTCTATGAAGCAAAC
GACAAGGGGAACGAATACGATGCCAGAAAGGTGAGAAAAGGCTCGCCAAT
CGGTTTAGACAATAGTTATAAGGTAGCCTCCATCTCAACTGGCAGCACCT
GTTCAGTGCATAAATGCCAGTCGATGGTCTTTAATTATGCAAAAAAGCCC
GTCCGATTCGAGAGGCAAAACAGCCTCGATGCTCTATCATTCAGACCGGG
CATCTTTAAGAGTATTCGTAGGGAGAAGCCAACCGAACAGGCGAATCCAG
AACCACAGCAGACAAAGAATATCANAAAGTCCTCACAATTCCTTGCCGAG
AGCAAGCACGTTTCTCTGCCATCGGATAGCGAAGATGAGTTGGAACTTAA
AGCCCAAAAACGTTATTTGCAAGATCAGTTTGTGAAAAAGCTCAATAGCA
GTAAGAATGATGAGAAGACTGGCACAGACGCAACGTCAAAATCTCGGAAA
TTCCAAGACAAATCCAGAAAACGAGCAACTAA
BO17481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-PA | 1275 | CG31907-RA | 1..825 | 17..841 | 4106 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-RB | 1574 | CG31907-RB | 78..946 | 16..882 | 4284 | 99.7 | Plus |
| CG31907-RA | 1470 | CG31907-RA | 78..946 | 16..882 | 4284 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7059842..7060710 | 882..16 | 4234 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:44 has no hits.
BO17481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:19 Download gff for
BO17481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-PA | 1..866 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:41 Download gff for
BO17481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 73..946 | 10..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:36 Download gff for
BO17481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 73..946 | 10..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:36 Download gff for
BO17481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7059842..7060713 | 11..882 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:41 Download gff for
BO17481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7059842..7060713 | 11..882 | 99 | <- | Minus |
BO17481.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ634143
> BO17481.complete
GAAGTTATCAGTCGACATGGCACTTTCCGCAACGAAGGACACTAGTCCAT
GGACCAACATGGTGAAGAGGGTAACAGCGAGCAAATACGATGTAGTCTCG
GTCAAGACGCTGCTGATGTTTATCAACAGCAAACTGGATTGCGAATTGCG
AGGCTTTGAGGATCTGAAAACAGGAGCAGTATATTGCCAACTGATGCACA
GACTCTTTCCCAATTCGATACAAATTCATAAGGTCAAGTTTTATACGAAC
GACATCAGCGACTTTCAGTTAAATTTCCGGTTACTAAACAATTGCTTTCA
AAAACTAAGAGTAACCGTTTATATGCCAGTGCATGAGTTAACTCTGGGAC
ACAATCAAGTGGTCTTCTGCAATTGGATATACAAGTTCTATGAAGCAAAC
GACAAGGGGAACGAATACGATGCCAGAAAGGTGAGAAAAGGCTCGCCAAT
CGGTTTAGACAATAGTTATAAGGTAGCCTCCATCTCAACTGGCAGCACCT
GTTCAGTGCATAAATGCCAGTCGATGGTCTTTAATTATGCAAAAAAGCCC
GTCCGATTCGAGAGGCAAAACAGCCTCGATGCTCTATCATTCAGACCGGG
CATCTTTAAGAGTATTCGTAGGGAGAAGCCAACCGAACAGGCGAATCCAG
AACCACAGCAGACAAAGAATATCAAAAAGTCCTCACAATTCCTTGCCGAG
AGCAAGCACGTTTCTCTGCCATCGGATAGCGAAGATGAGTTGGAACTTAA
AGCCCAAAAACGTTATTTGCAAGATCAGTTTGTGAAAAAGCTCAATAGCA
GTAAGAATGATGAGAAGACTGGCACAGACGCAACGTCAAAAATCTCGGAA
ATTCCAAGACCAAATCCAGAAAACGAGCAACTAAACACTGTATGCGAAAA
GTATGAGCAGGAAACGAGTGATCTGCGATCCAATCTTAATTTGATCGACA
AACTAGAATTACAGCTACAAAACTTACAGATTGATAAGGAAAAGCTGACC
AACAAGTTGTCACGCGTGGAGTCAATATTAAACAAACACGATTTAAATCC
AGAAAAAGCTGTTCTAAAATTAAGAAAATTGCTATTGAACCAAGCACAAA
CGGCAAGAGTGCATCCGCGTAAAGCGGATACACTTATTGATGAAGATGAA
TTAACCAAGAAAGAAGAATTCAAGTCTTGCACGGAATTTTCTCGTCAGGA
AGACGTTAAGTTGACGCCAACTCAAATAAAAAATCAAAAATCAAATACTA
GGTGTTCGCAAACTAAGGTCAGAAAGAGCCTAAAGGTTGCAAGCTTTCTA
GACCAT
BO17481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-RB | 1275 | CG31907-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| CG31907-RA | 1275 | CG31907-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-RB | 1574 | CG31907-RB | 78..1350 | 16..1288 | 6365 | 100 | Plus |
| CG31907-RA | 1470 | CG31907-RA | 78..1350 | 16..1288 | 6365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7059438..7060710 | 1288..16 | 6365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:01 has no hits.
BO17481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:23 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 1..1275 | 17..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:22 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 73..1356 | 10..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:08 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 79..1350 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:23 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 56..1339 | 10..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:04 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31907-RA | 79..1350 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:04 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7059435..7060709 | 17..1290 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:08 Download gff for
BO17481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7059435..7060709 | 17..1290 | 99 | | Minus |
BO17481.pep Sequence
Translation from 16 to 1306
> BO17481.pep
MALSATKDTSPWTNMVKRVTASKYDVVSVKTLLMFINSKLDCELRGFEDL
KTGAVYCQLMHRLFPNSIQIHKVKFYTNDISDFQLNFRLLNNCFQKLRVT
VYMPVHELTLGHNQVVFCNWIYKFYEANDKGNEYDARKVRKGSPIGLDNS
YKVASISTGSTCSVHKCQSMVFNYAKKPVRFERQNSLDALSFRPGIFKSI
RREKPTEQANPEPQQTKNIKKSSQFLAESKHVSLPSDSEDELELKAQKRY
LQDQFVKKLNSSKNDEKTGTDATSKISEIPRPNPENEQLNTVCEKYEQET
SDLRSNLNLIDKLELQLQNLQIDKEKLTNKLSRVESILNKHDLNPEKAVL
KLRKLLLNQAQTARVHPRKADTLIDEDELTKKEEFKSCTEFSRQEDVKLT
PTQIKNQKSNTRCSQTKVRKSLKVASFLDH
BO17481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31907-PB | 424 | CG31907-PB | 1..424 | 1..424 | 2185 | 100 | Plus |
| CG31907-PA | 424 | CG31907-PA | 1..424 | 1..424 | 2185 | 100 | Plus |
| Eb1-PE | 290 | CG3265-PE | 20..205 | 32..222 | 236 | 31.1 | Plus |
| Eb1-PG | 291 | CG3265-PG | 20..206 | 32..222 | 236 | 32.1 | Plus |
| Eb1-PA | 291 | CG3265-PA | 20..206 | 32..222 | 236 | 32.1 | Plus |
