Clone BO17482 Report

Search the DGRC for BO17482

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG14195-RA
Protein status:BO17482.pep: validated full length
Sequenced Size:1876

Clone Sequence Records

BO17482.3prime Sequence

625 bp (613 high quality bases) assembled on 2006-10-13

> BO17482.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCTCTGGCAGCAGAAGAAGAGGAAGT
TCCAGAGCAGCGTGGTAGTTCCGTAAAGGGCGCCGGCCAGTCCCACGGTG
GCCTGGAAGGAGTACCGCTCCACCACCCAGTGGGCCAGCGCGCCCCAGAG
GAGAACCAGCAGGCCGTTGGTGAAGTGCACCGGACGGCGGATGGCCGTCC
AGTTGGCCCGCGTCATGCCCATCTGGAAGACCAGCTCCTGCAGAAAGGCG
GTCACCACCTGGCCAAATCCCAGCAGCACGGCGGACACACTGAGCAGCAG
CTTGGAGGTGGAGAAGCTGATGAAGATCAGCGCCAGGCACTTGCAGATGC
TGCCCAGCGTGTGCCACTGGAGCTTCCGCTTATAGAGGCTCGTGCCGAAG
CGCGGAGTCATCAGGGAGAAGCACATCCATGGGAAGGCCAGCAGCGAGAA
GAGGAACGGGATCTCGGCGTTCTTCAGCGCATGGTGGCTGACCGCCAGTC
CGGGTAGCACCGTCAGGCACATCACGTAGCTAAAGATGTCCGCCGAGAGG
AGCAGCGTGGTGGCGTACAGCTGCGGCACCAGCAGCGCCTGCTGCAGCGG
CATGGCGATCTTGTCCAGCAGATTC

BO17482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-PA 1845 CG14195-RA 1236..1842 625..19 3035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-RB 2696 CG14195-RB 1960..2566 625..19 3035 100 Minus
CG14195-RA 2123 CG14195-RA 1387..1993 625..19 3035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19208824..19209128 19..323 1525 100 Plus
X 23542271 X 19209198..19209499 324..625 1510 100 Plus
Blast to na_te.dros performed on 2015-02-05 01:24:36 has no hits.

BO17482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:19 Download gff for BO17482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-PA 1236..1845 16..625 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:44 Download gff for BO17482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 1387..1993 19..625 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:55 Download gff for BO17482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 1387..1993 19..625 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:55 Download gff for BO17482.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19208824..19209128 19..323 100 <- Plus
X 19209198..19209499 324..625 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:44 Download gff for BO17482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19102857..19103161 19..323 100 <- Plus
arm_X 19103231..19103532 324..625 100   Plus

BO17482.5prime Sequence

665 bp (616 high quality bases) assembled on 2006-10-13

> BO17482.5prime
GAAGTTATCAGTCGACATGGCAACCTCAGCGATCGGCGGGGCGGGCGTGG
GCGTGGCTGCCTCCGGTCCAGTGCGACGACCCACTGCCAGAGCCACCGCC
GGAATCCAGAGACGCAGGGTGGTCAAGAAGCACATCCAGCAAAAGTATAT
GCTCTGCGGCTTCGCCATACACGCTTTCCTGGCCACACCCGCCTATCTGT
ACGGGAACGTGGTGGAGTCCGACAAGGATCTGGTGTTGAGGATATGGCCG
GCGATCGTTTACCAGGCCACAGGCGAGCTCTGCCGCTCGATCATGGAGCA
CTTGGACACAGAGTACAGTGGCAGATCGAGGGAGACGACGCAGTACCGAC
GGGTCTTCCTCCTGGCCACGCTCATTGCCTGCGTATCGCTGATGGTCAGC
GGGATCCTGTTCTCCTCCGCCTGGATCGTGGTCACAACCACCACACAGGT
GGTAGCTATTGTCTTCTACGGATTCTTTGCAGGTATCGGCTCCAGCTTGT
ACCTGTGGAAGACGCACGTCATTCTGGAGGCAGTGCGTCCGCGGGAGGAC
AAGTACGTCCGCAAGACGATCCACCTGTGCGGCGAGGCCTTCTGCCAGCT
GTTCCTCTCGTTCGTGTTCACCACCCTGCGCACCTTGTACGGCACCGCCC
AGTCCATCGTACTGA

BO17482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-PA 1845 CG14195-RA 1..649 17..665 3220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-RB 2696 CG14195-RB 725..1373 17..665 3230 99.8 Plus
CG14195-RA 2123 CG14195-RA 152..800 17..665 3230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19210836..19211148 485..173 1565 100 Minus
X 23542271 X 19210158..19210342 665..481 910 99.5 Minus
X 23542271 X 19211202..19211358 173..17 785 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:24:53 has no hits.

BO17482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:21 Download gff for BO17482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-PA 1..648 17..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:46 Download gff for BO17482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 145..799 9..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:58 Download gff for BO17482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 145..799 9..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:58 Download gff for BO17482.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19210159..19210340 483..664 99 <- Minus
X 19210839..19211148 173..482 100 <- Minus
X 19211203..19211365 9..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:46 Download gff for BO17482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19104192..19104373 483..664 99 <- Minus
arm_X 19104872..19105181 173..482 100 <- Minus
arm_X 19105236..19105398 9..172 98   Minus

BO17482.complete Sequence

1876 bp assembled on 2007-03-23

GenBank Submission: FJ634144

> BO17482.complete
GAAGTTATCAGTCGACATGGCAACCTCAGCGATCGGCGGGGCGGGCGTGG
GCGTGGCTGCCTCCGGTCCAGTGCGACGACCCACTGCCAGAGCCACCGCC
GGAATCCAGAGACGCAGGGTGGTCAAGAAGCACATCCAGCAAAAGTATAT
GCTCTGCGGCTTCGCCATACACGCTTTCCTGGCCACACCCGCCTATCTGT
ACGGGAACGTGGTGGAGTCCGACAAGGATCTGGTGTTGAGGATATGGCCG
GCGATCGTTTACCAGGCCACAGGCGAGCTCTGCCGCTCGATCATGGAGCA
CTTGGACACAGAGTACAGTGGCAGATCGAGGGAGACGACGCAGTACCGAC
GGGTCTTCCTCCTGGCCACGCTCATTGCCTGCGTATCGCTGATGGTCAGC
GGGATCCTGTTCTCCTCCGCCTGGATCGTGGTCACAACCACCACACAGGT
GGTAGCTATTGTCTTCTACGGATTCTTTGCAGGTATCGGCTCCAGCTTGT
ACCTGTGGAAGACGCACGTCATTCTGGAGGCAGTGCGTCCGCGGGAGGAC
AAGTACGTCCGCAAGACGATCCACCTGTGCGGCGAGGCCTTCTGCCAGCT
GTTCCTCTCGTTCGTGTTCACCAGCCTGCGCACCTTGTACGGCACCGCCC
AGTCCATCGTACTGATGTCCGCCCTGCTGGTGAACCTCATCCCGCTGAGC
CTGATCATTACCAAGCATCGCGAGGATGCCTTCACCACGAAGCGGATATC
GGTGATCAAGGCGGAAACGGGATTCGCTGCACTGCCGCTGCGAGCCGCAC
TGGCGGCCAACTTGGTGGCGGACCAGCTGGACGGATTGGACACGCTCTCA
TGGCGGAATCCGGCCACCACCGAAATGGCCACGCCCAGTGGTGCCGTCGC
CGCCGCTGTGGTGGTGGACACGCACAGCAACTACATGCTGGCCACCGATG
AGGCGTATGTGACGTATGTGAATCCCAACGGGGTGGAGATTATGGAGATC
ATACCCGAGGAGGACGAGACGGTGTCCATGATGCGGTCGAGCAATGCGAC
CATCGACAATTATGCCATGTCCGCCTCGCAGATGTCGCACAAGTCCCTGT
CCAATGGACGTCTCTATCCACTGACGCCCCAGCATCCTTTGGGCACAGGA
ACGGGAACTGGTACAGGTAGCTCCTCACCCCTACCTCCCGATTATGCCAA
CCTGCGCCGCATCCGGCGGATGTCGCGTGCGGTAACCACGCACCTGTGGT
GGAATCTGCTGGACAAGATCGCCATGCCGCTGCAGCAGGCGCTGCTGGTG
CCGCAGCTGTACGCCACCACGCTGCTCCTCTCGGCGGACATCTTTAGCTA
CGTGATGTGCCTGACGGTGCTACCCGGACTGGCGGTCAGCCACCATGCGC
TGAAGAACGCCGAGATCCCGTTCCTCTTCTCGCTGCTGGCCTTCCCATGG
ATGTGCTTCTCCCTGATGACTCCGCGCTTCGGCACGAGCCTCTATAAGCG
GAAGCTCCAGTGGCACACGCTGGGCAGCATCTGCAAGTGCCTGGCGCTGA
TCTTCATCAGCTTCTCCACCTCCAAGCTGCTGCTCAGTGTGTCCGCCGTG
CTGCTGGGATTTGGCCAGGTGGTGACCGCCTTTCTGCAGGAGCTGGTCTT
CCAGATGGGCATGACGCGGGCCAACTGGACGGCCATCCGCCGTCCGGTGC
ACTTCACCAACGGCCTGCTGGTTCTCCTCTGGGGCGCGCTGGCCCACTGG
GTGGTGGAGCGGTACTCCTTCCAGGCCACCGTGGGACTGGCCGGCGCCCT
TTACGGAACTACCACGCTGCTCTGGAACTTCCTCTTCTTCTGCTGCCAGA
GCAAGGATGCAAGCTTTCTAGACCAT

BO17482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-RB 1845 CG14195-PB 1..1842 17..1858 9210 100 Plus
CG14195-RA 1845 CG14195-PA 1..1842 17..1858 9210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-RB 2696 CG14195-RB 725..2566 17..1858 9210 100 Plus
CG14195-RA 2123 CG14195-RA 152..1993 17..1858 9210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19209619..19210342 1204..481 3620 100 Minus
X 23542271 X 19209198..19209547 1553..1204 1750 100 Minus
X 23542271 X 19210836..19211148 485..173 1565 100 Minus
X 23542271 X 19208824..19209128 1858..1554 1525 100 Minus
X 23542271 X 19211202..19211358 173..17 785 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:21:59 has no hits.

BO17482.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:32 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 1..1845 17..1861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:12 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 1..1845 17..1861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:14 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 152..1993 17..1860 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:32 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 1..1845 17..1861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:09 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
CG14195-RA 152..1993 17..1860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:09 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
X 19209198..19209546 1205..1553 100 <- Minus
X 19208821..19209128 1554..1860 99 <- Minus
X 19209619..19210340 483..1204 100 <- Minus
X 19210839..19211148 173..482 100 <- Minus
X 19211203..19211358 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:14 Download gff for BO17482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19102854..19103161 1554..1860 99 <- Minus
arm_X 19103231..19103579 1205..1553 100 <- Minus
arm_X 19103652..19104373 483..1204 100 <- Minus
arm_X 19104872..19105181 173..482 100 <- Minus
arm_X 19105236..19105391 17..172 100   Minus

BO17482.pep Sequence

Translation from 16 to 1876

> BO17482.pep
MATSAIGGAGVGVAASGPVRRPTARATAGIQRRRVVKKHIQQKYMLCGFA
IHAFLATPAYLYGNVVESDKDLVLRIWPAIVYQATGELCRSIMEHLDTEY
SGRSRETTQYRRVFLLATLIACVSLMVSGILFSSAWIVVTTTTQVVAIVF
YGFFAGIGSSLYLWKTHVILEAVRPREDKYVRKTIHLCGEAFCQLFLSFV
FTSLRTLYGTAQSIVLMSALLVNLIPLSLIITKHREDAFTTKRISVIKAE
TGFAALPLRAALAANLVADQLDGLDTLSWRNPATTEMATPSGAVAAAVVV
DTHSNYMLATDEAYVTYVNPNGVEIMEIIPEEDETVSMMRSSNATIDNYA
MSASQMSHKSLSNGRLYPLTPQHPLGTGTGTGTGSSSPLPPDYANLRRIR
RMSRAVTTHLWWNLLDKIAMPLQQALLVPQLYATTLLLSADIFSYVMCLT
VLPGLAVSHHALKNAEIPFLFSLLAFPWMCFSLMTPRFGTSLYKRKLQWH
TLGSICKCLALIFISFSTSKLLLSVSAVLLGFGQVVTAFLQELVFQMGMT
RANWTAIRRPVHFTNGLLVLLWGALAHWVVERYSFQATVGLAGALYGTTT
LLWNFLFFCCQSKDASFLDH

BO17482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14195-PB 614 CG14195-PB 1..614 1..614 3149 100 Plus
CG14195-PA 614 CG14195-PA 1..614 1..614 3149 100 Plus