Clone Sequence Records
BO17482.3prime Sequence
625 bp (613 high quality bases) assembled on 2006-10-13
> BO17482.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCTCTGGCAGCAGAAGAAGAGGAAGT
TCCAGAGCAGCGTGGTAGTTCCGTAAAGGGCGCCGGCCAGTCCCACGGTG
GCCTGGAAGGAGTACCGCTCCACCACCCAGTGGGCCAGCGCGCCCCAGAG
GAGAACCAGCAGGCCGTTGGTGAAGTGCACCGGACGGCGGATGGCCGTCC
AGTTGGCCCGCGTCATGCCCATCTGGAAGACCAGCTCCTGCAGAAAGGCG
GTCACCACCTGGCCAAATCCCAGCAGCACGGCGGACACACTGAGCAGCAG
CTTGGAGGTGGAGAAGCTGATGAAGATCAGCGCCAGGCACTTGCAGATGC
TGCCCAGCGTGTGCCACTGGAGCTTCCGCTTATAGAGGCTCGTGCCGAAG
CGCGGAGTCATCAGGGAGAAGCACATCCATGGGAAGGCCAGCAGCGAGAA
GAGGAACGGGATCTCGGCGTTCTTCAGCGCATGGTGGCTGACCGCCAGTC
CGGGTAGCACCGTCAGGCACATCACGTAGCTAAAGATGTCCGCCGAGAGG
AGCAGCGTGGTGGCGTACAGCTGCGGCACCAGCAGCGCCTGCTGCAGCGG
CATGGCGATCTTGTCCAGCAGATTC
BO17482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-PA | 1845 | CG14195-RA | 1236..1842 | 625..19 | 3035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-RB | 2696 | CG14195-RB | 1960..2566 | 625..19 | 3035 | 100 | Minus |
CG14195-RA | 2123 | CG14195-RA | 1387..1993 | 625..19 | 3035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19208824..19209128 | 19..323 | 1525 | 100 | Plus |
X | 23542271 | X | 19209198..19209499 | 324..625 | 1510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:24:36 has no hits.
BO17482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:19 Download gff for
BO17482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-PA | 1236..1845 | 16..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:44 Download gff for
BO17482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 1387..1993 | 19..625 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:55 Download gff for
BO17482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 1387..1993 | 19..625 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:55 Download gff for
BO17482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19208824..19209128 | 19..323 | 100 | <- | Plus |
X | 19209198..19209499 | 324..625 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:44 Download gff for
BO17482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19102857..19103161 | 19..323 | 100 | <- | Plus |
arm_X | 19103231..19103532 | 324..625 | 100 | | Plus |
BO17482.5prime Sequence
665 bp (616 high quality bases) assembled on 2006-10-13
> BO17482.5prime
GAAGTTATCAGTCGACATGGCAACCTCAGCGATCGGCGGGGCGGGCGTGG
GCGTGGCTGCCTCCGGTCCAGTGCGACGACCCACTGCCAGAGCCACCGCC
GGAATCCAGAGACGCAGGGTGGTCAAGAAGCACATCCAGCAAAAGTATAT
GCTCTGCGGCTTCGCCATACACGCTTTCCTGGCCACACCCGCCTATCTGT
ACGGGAACGTGGTGGAGTCCGACAAGGATCTGGTGTTGAGGATATGGCCG
GCGATCGTTTACCAGGCCACAGGCGAGCTCTGCCGCTCGATCATGGAGCA
CTTGGACACAGAGTACAGTGGCAGATCGAGGGAGACGACGCAGTACCGAC
GGGTCTTCCTCCTGGCCACGCTCATTGCCTGCGTATCGCTGATGGTCAGC
GGGATCCTGTTCTCCTCCGCCTGGATCGTGGTCACAACCACCACACAGGT
GGTAGCTATTGTCTTCTACGGATTCTTTGCAGGTATCGGCTCCAGCTTGT
ACCTGTGGAAGACGCACGTCATTCTGGAGGCAGTGCGTCCGCGGGAGGAC
AAGTACGTCCGCAAGACGATCCACCTGTGCGGCGAGGCCTTCTGCCAGCT
GTTCCTCTCGTTCGTGTTCACCACCCTGCGCACCTTGTACGGCACCGCCC
AGTCCATCGTACTGA
BO17482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-PA | 1845 | CG14195-RA | 1..649 | 17..665 | 3220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-RB | 2696 | CG14195-RB | 725..1373 | 17..665 | 3230 | 99.8 | Plus |
CG14195-RA | 2123 | CG14195-RA | 152..800 | 17..665 | 3230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19210836..19211148 | 485..173 | 1565 | 100 | Minus |
X | 23542271 | X | 19210158..19210342 | 665..481 | 910 | 99.5 | Minus |
X | 23542271 | X | 19211202..19211358 | 173..17 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:24:53 has no hits.
BO17482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:21 Download gff for
BO17482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-PA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:46 Download gff for
BO17482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 145..799 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:58 Download gff for
BO17482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 145..799 | 9..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:58 Download gff for
BO17482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19210159..19210340 | 483..664 | 99 | <- | Minus |
X | 19210839..19211148 | 173..482 | 100 | <- | Minus |
X | 19211203..19211365 | 9..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:46 Download gff for
BO17482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19104192..19104373 | 483..664 | 99 | <- | Minus |
arm_X | 19104872..19105181 | 173..482 | 100 | <- | Minus |
arm_X | 19105236..19105398 | 9..172 | 98 | | Minus |
BO17482.complete Sequence
1876 bp assembled on 2007-03-23
GenBank Submission: FJ634144
> BO17482.complete
GAAGTTATCAGTCGACATGGCAACCTCAGCGATCGGCGGGGCGGGCGTGG
GCGTGGCTGCCTCCGGTCCAGTGCGACGACCCACTGCCAGAGCCACCGCC
GGAATCCAGAGACGCAGGGTGGTCAAGAAGCACATCCAGCAAAAGTATAT
GCTCTGCGGCTTCGCCATACACGCTTTCCTGGCCACACCCGCCTATCTGT
ACGGGAACGTGGTGGAGTCCGACAAGGATCTGGTGTTGAGGATATGGCCG
GCGATCGTTTACCAGGCCACAGGCGAGCTCTGCCGCTCGATCATGGAGCA
CTTGGACACAGAGTACAGTGGCAGATCGAGGGAGACGACGCAGTACCGAC
GGGTCTTCCTCCTGGCCACGCTCATTGCCTGCGTATCGCTGATGGTCAGC
GGGATCCTGTTCTCCTCCGCCTGGATCGTGGTCACAACCACCACACAGGT
GGTAGCTATTGTCTTCTACGGATTCTTTGCAGGTATCGGCTCCAGCTTGT
ACCTGTGGAAGACGCACGTCATTCTGGAGGCAGTGCGTCCGCGGGAGGAC
AAGTACGTCCGCAAGACGATCCACCTGTGCGGCGAGGCCTTCTGCCAGCT
GTTCCTCTCGTTCGTGTTCACCAGCCTGCGCACCTTGTACGGCACCGCCC
AGTCCATCGTACTGATGTCCGCCCTGCTGGTGAACCTCATCCCGCTGAGC
CTGATCATTACCAAGCATCGCGAGGATGCCTTCACCACGAAGCGGATATC
GGTGATCAAGGCGGAAACGGGATTCGCTGCACTGCCGCTGCGAGCCGCAC
TGGCGGCCAACTTGGTGGCGGACCAGCTGGACGGATTGGACACGCTCTCA
TGGCGGAATCCGGCCACCACCGAAATGGCCACGCCCAGTGGTGCCGTCGC
CGCCGCTGTGGTGGTGGACACGCACAGCAACTACATGCTGGCCACCGATG
AGGCGTATGTGACGTATGTGAATCCCAACGGGGTGGAGATTATGGAGATC
ATACCCGAGGAGGACGAGACGGTGTCCATGATGCGGTCGAGCAATGCGAC
CATCGACAATTATGCCATGTCCGCCTCGCAGATGTCGCACAAGTCCCTGT
CCAATGGACGTCTCTATCCACTGACGCCCCAGCATCCTTTGGGCACAGGA
ACGGGAACTGGTACAGGTAGCTCCTCACCCCTACCTCCCGATTATGCCAA
CCTGCGCCGCATCCGGCGGATGTCGCGTGCGGTAACCACGCACCTGTGGT
GGAATCTGCTGGACAAGATCGCCATGCCGCTGCAGCAGGCGCTGCTGGTG
CCGCAGCTGTACGCCACCACGCTGCTCCTCTCGGCGGACATCTTTAGCTA
CGTGATGTGCCTGACGGTGCTACCCGGACTGGCGGTCAGCCACCATGCGC
TGAAGAACGCCGAGATCCCGTTCCTCTTCTCGCTGCTGGCCTTCCCATGG
ATGTGCTTCTCCCTGATGACTCCGCGCTTCGGCACGAGCCTCTATAAGCG
GAAGCTCCAGTGGCACACGCTGGGCAGCATCTGCAAGTGCCTGGCGCTGA
TCTTCATCAGCTTCTCCACCTCCAAGCTGCTGCTCAGTGTGTCCGCCGTG
CTGCTGGGATTTGGCCAGGTGGTGACCGCCTTTCTGCAGGAGCTGGTCTT
CCAGATGGGCATGACGCGGGCCAACTGGACGGCCATCCGCCGTCCGGTGC
ACTTCACCAACGGCCTGCTGGTTCTCCTCTGGGGCGCGCTGGCCCACTGG
GTGGTGGAGCGGTACTCCTTCCAGGCCACCGTGGGACTGGCCGGCGCCCT
TTACGGAACTACCACGCTGCTCTGGAACTTCCTCTTCTTCTGCTGCCAGA
GCAAGGATGCAAGCTTTCTAGACCAT
BO17482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-RB | 1845 | CG14195-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
CG14195-RA | 1845 | CG14195-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-RB | 2696 | CG14195-RB | 725..2566 | 17..1858 | 9210 | 100 | Plus |
CG14195-RA | 2123 | CG14195-RA | 152..1993 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19209619..19210342 | 1204..481 | 3620 | 100 | Minus |
X | 23542271 | X | 19209198..19209547 | 1553..1204 | 1750 | 100 | Minus |
X | 23542271 | X | 19210836..19211148 | 485..173 | 1565 | 100 | Minus |
X | 23542271 | X | 19208824..19209128 | 1858..1554 | 1525 | 100 | Minus |
X | 23542271 | X | 19211202..19211358 | 173..17 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:21:59 has no hits.
BO17482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:32 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 1..1845 | 17..1861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:12 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 1..1845 | 17..1861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:14 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 152..1993 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:32 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 1..1845 | 17..1861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:09 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14195-RA | 152..1993 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:09 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19209198..19209546 | 1205..1553 | 100 | <- | Minus |
X | 19208821..19209128 | 1554..1860 | 99 | <- | Minus |
X | 19209619..19210340 | 483..1204 | 100 | <- | Minus |
X | 19210839..19211148 | 173..482 | 100 | <- | Minus |
X | 19211203..19211358 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:14 Download gff for
BO17482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19102854..19103161 | 1554..1860 | 99 | <- | Minus |
arm_X | 19103231..19103579 | 1205..1553 | 100 | <- | Minus |
arm_X | 19103652..19104373 | 483..1204 | 100 | <- | Minus |
arm_X | 19104872..19105181 | 173..482 | 100 | <- | Minus |
arm_X | 19105236..19105391 | 17..172 | 100 | | Minus |
BO17482.pep Sequence
Translation from 16 to 1876
> BO17482.pep
MATSAIGGAGVGVAASGPVRRPTARATAGIQRRRVVKKHIQQKYMLCGFA
IHAFLATPAYLYGNVVESDKDLVLRIWPAIVYQATGELCRSIMEHLDTEY
SGRSRETTQYRRVFLLATLIACVSLMVSGILFSSAWIVVTTTTQVVAIVF
YGFFAGIGSSLYLWKTHVILEAVRPREDKYVRKTIHLCGEAFCQLFLSFV
FTSLRTLYGTAQSIVLMSALLVNLIPLSLIITKHREDAFTTKRISVIKAE
TGFAALPLRAALAANLVADQLDGLDTLSWRNPATTEMATPSGAVAAAVVV
DTHSNYMLATDEAYVTYVNPNGVEIMEIIPEEDETVSMMRSSNATIDNYA
MSASQMSHKSLSNGRLYPLTPQHPLGTGTGTGTGSSSPLPPDYANLRRIR
RMSRAVTTHLWWNLLDKIAMPLQQALLVPQLYATTLLLSADIFSYVMCLT
VLPGLAVSHHALKNAEIPFLFSLLAFPWMCFSLMTPRFGTSLYKRKLQWH
TLGSICKCLALIFISFSTSKLLLSVSAVLLGFGQVVTAFLQELVFQMGMT
RANWTAIRRPVHFTNGLLVLLWGALAHWVVERYSFQATVGLAGALYGTTT
LLWNFLFFCCQSKDASFLDH
BO17482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14195-PB | 614 | CG14195-PB | 1..614 | 1..614 | 3149 | 100 | Plus |
CG14195-PA | 614 | CG14195-PA | 1..614 | 1..614 | 3149 | 100 | Plus |