Clone Sequence Records
BO17483.3prime Sequence
803 bp (802 high quality bases) assembled on 2006-10-13
> BO17483.3prime
ATGGTCTAGAAAGCTTGCATGAGGCTCCCTTTGTGGATCATATGGCGCAT
TTCGCCCAACTTTCCACTGCTGTTCCAGTTGGTTTTTATCGCAGATTTTA
TTGGCCAGAACCTTGCCAACCTTATGACCACTAGCCAATTGGGCTTCCAG
GCACCACACCCATATTTGGCCCTGTTGGATCCACCGATGACGGTGATTGT
AGTACCAGTACTGATTCCCACCATTTTTGTGACAACGAAAGAGCCACACC
GACTTTGAGCGTAGGCCCTGCGCTTCCAAGCAATCATCTTTGCTGTTCGT
CAGTTGAATCTCATGATCCTGCGTTAAGGACCAGTTCTGATGCTCGCCGG
GCATTGAATTATGCCCAGTGCACCGGGCTAAAACCACGGGCTTAGTGTGT
CTACAATTCAGGGAGTCCACACAGAATCCAGGAAATGCCACACTTTCAAT
GACCCCGGAGAAAACCAAAGGCGAATCCAATGCTAGGTACCTTTTAAGAA
AATCCGGAGCCACCTTGGTCATGTACCAATCGAAGGTCTTGCACTCCAGA
GCATTTCTCTTGGTTTTCCTTTGGAAAAGCAGACCAGCATTGGCCATCTT
ATAGAGCTTCGGATTCTTGTCGTACACATACTTTTTGTAATTATCCATCC
AAACTTCAGCTACTCGCTTGTAGTTCCTGGCCAGAAAATTGTGGTATCCT
GGACTACTAATCGATTTCATGGGTCTTTTACCTATGTGACCCACCCGGGC
GCAAGGTACATACAGCATCATTCCACCACACATCCAGACCTTAAAACTTA
TCT
BO17483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-PA | 1893 | CG31776-RA | 1106..1890 | 803..19 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-RA | 1964 | CG31776-RA | 1138..1922 | 803..19 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3471665..3472322 | 676..19 | 3290 | 100 | Minus |
2L | 23513712 | 2L | 3471432..3471559 | 803..676 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:33:58 has no hits.
BO17483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:22 Download gff for
BO17483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-PA | 1106..1893 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:59:26 Download gff for
BO17483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 1138..1925 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:56 Download gff for
BO17483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 1138..1925 | 15..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:56 Download gff for
BO17483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3471432..3471559 | 676..803 | 100 | -> | Minus |
2L | 3471666..3472325 | 15..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:59:26 Download gff for
BO17483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3471432..3471559 | 676..803 | 100 | -> | Minus |
arm_2L | 3471666..3472325 | 15..675 | 99 | | Minus |
BO17483.5prime Sequence
891 bp (738 high quality bases) assembled on 2006-10-13
> BO17483.5prime
GAAGTTATCAGTCGACATGAATGTGGATCTGAGATTGATTGTGCGCCTGT
TGCTGGCCATTCTATTGACTTCCTTGGTAACTACCATTTTAATGGGCAAG
CAGATACACAGAAGACTCGTGAAGTCCATGGTCAAAACAACCGGCGAAAA
GGATAGTTTGCCAGCAAGGCAGCTCCCAAAAAGGGAGATCAGCCCGAAGG
TCGCAGATTTCCCACCACCACTAACACTGAACCAAACTGAACTGGACATC
TTAAAGATCCAGCGAAACAATAGTTTCCGCCTGCCCCAGCAAGAAGCTAT
TAAGGAGTGGCAGGATGCGATTTTCTTTAAAGAGGATAGTAACCGCAGGG
GATTGGGTGAGCAGGGAAGAGCAGTTCAGTTACCAAACGCTAAATTAAAC
CCCGATGATTTCCAAGACTTCTATGCCGAACTCTCCGATCGCATTCCCCT
GAACAGATCCTTGCCGGATACCAGACCTATAAGTTGCCGGAAACGGAAGT
ATCTGGAGAACCTACCCAATGTGACAGTGATAATAGCCTTTCACGATGAA
CACCTAAGCGTTTTGCTAAGATCTATAACGAGCATTATAAATCGATCTCC
TGTTGAGTTACTCAAGCAGATTGTGCTCGTGGATGACGATAGTAATTTGC
CGGAATTGGGACAACAACTGGAAGAGATTGTGGCTCAAAACTTTCCGAAA
ATTATTCACATACTAAGACTTCCAGAACGACGTGGTTCCATCAAAGCGAG
AATGGAGGCAATCAGGGTGTCCAGCTGTCAAGTTTTGGTCTTTCTAGACT
CCCACATCGAAGTCAACACCAATTGGTTGCCTCCCTTGCTGGAACCTATA
GTTATTAACCCACATATAGTCACCCGTCCCATTTTGGATGC
BO17483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-PA | 1893 | CG31776-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-RA | 1964 | CG31776-RA | 32..907 | 16..891 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3470213..3470680 | 16..483 | 2340 | 100 | Plus |
2L | 23513712 | 2L | 3470732..3471076 | 482..826 | 1725 | 100 | Plus |
2L | 23513712 | 2L | 3471136..3471201 | 826..891 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:29:13 has no hits.
BO17483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:23 Download gff for
BO17483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:36 Download gff for
BO17483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 26..907 | 6..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:28 Download gff for
BO17483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 26..907 | 6..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:28 Download gff for
BO17483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
2L | 3471137..3471201 | 827..891 | 100 | | Plus |
2L | 3470207..3470680 | 6..483 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:36 Download gff for
BO17483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3470207..3470680 | 6..483 | 99 | -> | Plus |
arm_2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
arm_2L | 3471137..3471201 | 827..891 | 100 | | Plus |
BO17483.complete Sequence
1924 bp assembled on 2007-03-23
GenBank Submission: FJ634145
> BO17483.complete
GAAGTTATCAGTCGACATGAATGTGGATCTGAGATTGATTGTGCGCCTGT
TGCTGGCCATTCTATTGACTTCCTTGGTAACTACCATTTTAATGGGCAAG
CAGATACACAGAAGACTCGTGAAGTCCATGGTCAAAACAACCGGCGAAAA
GGATAGTTTGCCAGCAAGGCAGCTCCCAAAAAGGGAGATCAGCCCGAAGG
TCGCAGATTTCCCACCACCACTAACACTGAACCAAACTGAACTGGACATC
TTAAAGATCCAGCGAAACAATAGTTTCCGCCTGCCCCAGCAAGAAGCTAT
TAAGGAGTGGCAGGATGCGATTTTCTTTAAAGAGGATAGTAACCGCAGGG
GATTGGGTGAGCAGGGAAGAGCAGTTCAGTTACCAAACGCTAAATTAAAC
CCCGATGATTTCCAAGACTTCTATGCCGAACTCTCCGATCGCATTCCCCT
GAACAGATCCTTGCCGGATACCAGACCTATAAGTTGCCGGAAACGGAAGT
ATCTGGAGAACCTACCCAATGTGACAGTGATAATAGCCTTTCACGATGAA
CACCTAAGCGTTTTGCTAAGATCTATAACGAGCATTATAAATCGATCTCC
TGTTGAGTTACTCAAGCAGATTGTGCTCGTGGATGACGATAGTAATTTGC
CGGAATTGGGACAACAACTGGAAGAGATTGTGGCTCAAAACTTTCCGAAA
ATTATTCACATACTAAGACTTCCAGAACGACGTGGTTCCATCAAAGCGAG
AATGGAGGCAATCAGGGTGTCCAGCTGTCAAGTTTTGGTCTTTCTAGACT
CCCACATCGAAGTCAACACCAATTGGTTGCCTCCCTTGCTGGAACCTATA
GTTATTAACCCACATATAGTCACCCGTCCCATTTTGGATGCCATCTCACG
CAAGACATTTGCCTATGCCAAACAAAATACGATGACTCGCTCCGGTTTCA
ATTGGTGGCTTGAGTCTGAGAGCTTACCAATTTTTCCTGAGGATAAAAGT
CCTGATTCCACACCCTACCGTACACCGGTTTTATCAGGAGCTATGGCGAT
TGACAGGAACTATTTCTTGAATCTGGGGGGATTTGATGAGCAGCTGGACA
CCTGGGAAGCCGAGAAGTTCGAGATAAGTTTTAAGGTCTGGATGTGTGGT
GGAATGATGCTGTATGTACCTTGCGCCCGGGTGGGTCACATAGGTAAAAG
ACCCATGAAATCGATTAGTAGTCCAGGATACCACAATTTTCTGGCCAGGA
ACTACAAGCGAGTAGCTGAAGTTTGGATGGATAATTACAAAAAGTATGTG
TACGACAAGAATCCGAAGCTCTATAAGATGGCCAATGCTGGTCTGCTTTT
CCAAAGGAAAACCAAGAGAAATGCTCTGGAGTGCAAGACCTTCGATTGGT
ACATGACCAAGGTGGCTCCGGATTTTCTTAAAAGGTACCTAGCATTGGAT
TCGCCTTTGGTTTTCTCCGGGGTCATTGAAAGTGTGGCATTTCCTGGATT
CTGTGTGGACTCCCTGAATTGTAGACACACTAAGCCCGTGGTTTTAGCCC
GGTGCACTGGGCATAATTCAATGCCCGGCGAGCATCAGAACTGGTCCTTA
ACGCAGGATCATGAGATTCAACTGACGAACAGCAAAGATGATTGCTTGGA
AGCGCAGGGCCTACGCTCAAAGTCGGTGTGGCTCTTTCGTTGTCACAAAA
ATGGTGGGAATCAGTACTGGTACTACAATCACCGTCATCGGTGGATCCAA
CAGGGCCAAATATGGGTGTGGTGCCTGGAAGCCCAATTGGCTAGTGGTCA
TAAGGTTGGCAAGGTTCTGGCCAATAAAATCTGCGATAAAAACCAACTGG
AACAGCAGTGGAAAGTTGGGCGAAATGCGCCATATGATCCACAAAGGGAG
CCTCATGCAAGCTTTCTAGACCAT
BO17483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-RA | 1893 | CG31776-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
pgant4-RC | 1935 | CG31956-PC | 1094..1326 | 1071..1303 | 235 | 73.4 | Plus |
pgant4-RB | 1935 | CG31956-PB | 1094..1326 | 1071..1303 | 235 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-RA | 1964 | CG31776-RA | 32..1922 | 16..1906 | 9455 | 100 | Plus |
pgant4-RC | 2543 | CG31956-RC | 1294..1526 | 1071..1303 | 235 | 73.4 | Plus |
pgant4-RB | 2411 | CG31956-RB | 1162..1394 | 1071..1303 | 235 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3471665..3472322 | 1249..1906 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 3470213..3470680 | 16..483 | 2340 | 100 | Plus |
2L | 23513712 | 2L | 3471136..3471559 | 826..1249 | 2120 | 100 | Plus |
2L | 23513712 | 2L | 3470732..3471076 | 482..826 | 1725 | 100 | Plus |
2L | 23513712 | 2L | 3474020..3474141 | 1071..1192 | 190 | 77 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:49 has no hits.
BO17483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:15 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 1..1893 | 17..1910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:45 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 26..1925 | 6..1910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:05 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 33..1922 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:15 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 26..1925 | 6..1910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:19 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31776-RA | 33..1922 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:19 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3470214..3470680 | 17..483 | 100 | -> | Plus |
2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
2L | 3471137..3471559 | 827..1249 | 100 | -> | Plus |
2L | 3471666..3472322 | 1250..1908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:05 Download gff for
BO17483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3470734..3471076 | 484..826 | 100 | -> | Plus |
arm_2L | 3471137..3471559 | 827..1249 | 100 | -> | Plus |
arm_2L | 3470214..3470680 | 17..483 | 100 | -> | Plus |
arm_2L | 3471666..3472322 | 1250..1908 | 99 | | Plus |
BO17483.pep Sequence
Translation from 16 to 1924
> BO17483.pep
MNVDLRLIVRLLLAILLTSLVTTILMGKQIHRRLVKSMVKTTGEKDSLPA
RQLPKREISPKVADFPPPLTLNQTELDILKIQRNNSFRLPQQEAIKEWQD
AIFFKEDSNRRGLGEQGRAVQLPNAKLNPDDFQDFYAELSDRIPLNRSLP
DTRPISCRKRKYLENLPNVTVIIAFHDEHLSVLLRSITSIINRSPVELLK
QIVLVDDDSNLPELGQQLEEIVAQNFPKIIHILRLPERRGSIKARMEAIR
VSSCQVLVFLDSHIEVNTNWLPPLLEPIVINPHIVTRPILDAISRKTFAY
AKQNTMTRSGFNWWLESESLPIFPEDKSPDSTPYRTPVLSGAMAIDRNYF
LNLGGFDEQLDTWEAEKFEISFKVWMCGGMMLYVPCARVGHIGKRPMKSI
SSPGYHNFLARNYKRVAEVWMDNYKKYVYDKNPKLYKMANAGLLFQRKTK
RNALECKTFDWYMTKVAPDFLKRYLALDSPLVFSGVIESVAFPGFCVDSL
NCRHTKPVVLARCTGHNSMPGEHQNWSLTQDHEIQLTNSKDDCLEAQGLR
SKSVWLFRCHKNGGNQYWYYNHRHRWIQQGQIWVWCLEAQLASGHKVGKV
LANKICDKNQLEQQWKVGRNAPYDPQREPHASFLDH
BO17483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31776-PA | 630 | CG31776-PA | 1..630 | 1..630 | 3355 | 100 | Plus |
pgant4-PC | 644 | CG31956-PC | 12..629 | 5..618 | 1267 | 42.2 | Plus |
pgant4-PB | 644 | CG31956-PB | 12..629 | 5..618 | 1267 | 42.2 | Plus |
pgant6-PC | 666 | CG2103-PC | 10..648 | 1..618 | 1121 | 38.3 | Plus |
pgant6-PB | 666 | CG2103-PB | 10..648 | 1..618 | 1121 | 38.3 | Plus |