Clone BO17483 Report

Search the DGRC for BO17483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG31776-RA
Protein status:BO17483.pep: validated full length
Sequenced Size:1924

Clone Sequence Records

BO17483.3prime Sequence

803 bp (802 high quality bases) assembled on 2006-10-13

> BO17483.3prime
ATGGTCTAGAAAGCTTGCATGAGGCTCCCTTTGTGGATCATATGGCGCAT
TTCGCCCAACTTTCCACTGCTGTTCCAGTTGGTTTTTATCGCAGATTTTA
TTGGCCAGAACCTTGCCAACCTTATGACCACTAGCCAATTGGGCTTCCAG
GCACCACACCCATATTTGGCCCTGTTGGATCCACCGATGACGGTGATTGT
AGTACCAGTACTGATTCCCACCATTTTTGTGACAACGAAAGAGCCACACC
GACTTTGAGCGTAGGCCCTGCGCTTCCAAGCAATCATCTTTGCTGTTCGT
CAGTTGAATCTCATGATCCTGCGTTAAGGACCAGTTCTGATGCTCGCCGG
GCATTGAATTATGCCCAGTGCACCGGGCTAAAACCACGGGCTTAGTGTGT
CTACAATTCAGGGAGTCCACACAGAATCCAGGAAATGCCACACTTTCAAT
GACCCCGGAGAAAACCAAAGGCGAATCCAATGCTAGGTACCTTTTAAGAA
AATCCGGAGCCACCTTGGTCATGTACCAATCGAAGGTCTTGCACTCCAGA
GCATTTCTCTTGGTTTTCCTTTGGAAAAGCAGACCAGCATTGGCCATCTT
ATAGAGCTTCGGATTCTTGTCGTACACATACTTTTTGTAATTATCCATCC
AAACTTCAGCTACTCGCTTGTAGTTCCTGGCCAGAAAATTGTGGTATCCT
GGACTACTAATCGATTTCATGGGTCTTTTACCTATGTGACCCACCCGGGC
GCAAGGTACATACAGCATCATTCCACCACACATCCAGACCTTAAAACTTA
TCT

BO17483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-PA 1893 CG31776-RA 1106..1890 803..19 3925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-RA 1964 CG31776-RA 1138..1922 803..19 3925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3471665..3472322 676..19 3290 100 Minus
2L 23513712 2L 3471432..3471559 803..676 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:33:58 has no hits.

BO17483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:22 Download gff for BO17483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-PA 1106..1893 15..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:59:26 Download gff for BO17483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 1138..1925 15..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:56 Download gff for BO17483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 1138..1925 15..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:56 Download gff for BO17483.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3471432..3471559 676..803 100 -> Minus
2L 3471666..3472325 15..675 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:59:26 Download gff for BO17483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3471432..3471559 676..803 100 -> Minus
arm_2L 3471666..3472325 15..675 99   Minus

BO17483.5prime Sequence

891 bp (738 high quality bases) assembled on 2006-10-13

> BO17483.5prime
GAAGTTATCAGTCGACATGAATGTGGATCTGAGATTGATTGTGCGCCTGT
TGCTGGCCATTCTATTGACTTCCTTGGTAACTACCATTTTAATGGGCAAG
CAGATACACAGAAGACTCGTGAAGTCCATGGTCAAAACAACCGGCGAAAA
GGATAGTTTGCCAGCAAGGCAGCTCCCAAAAAGGGAGATCAGCCCGAAGG
TCGCAGATTTCCCACCACCACTAACACTGAACCAAACTGAACTGGACATC
TTAAAGATCCAGCGAAACAATAGTTTCCGCCTGCCCCAGCAAGAAGCTAT
TAAGGAGTGGCAGGATGCGATTTTCTTTAAAGAGGATAGTAACCGCAGGG
GATTGGGTGAGCAGGGAAGAGCAGTTCAGTTACCAAACGCTAAATTAAAC
CCCGATGATTTCCAAGACTTCTATGCCGAACTCTCCGATCGCATTCCCCT
GAACAGATCCTTGCCGGATACCAGACCTATAAGTTGCCGGAAACGGAAGT
ATCTGGAGAACCTACCCAATGTGACAGTGATAATAGCCTTTCACGATGAA
CACCTAAGCGTTTTGCTAAGATCTATAACGAGCATTATAAATCGATCTCC
TGTTGAGTTACTCAAGCAGATTGTGCTCGTGGATGACGATAGTAATTTGC
CGGAATTGGGACAACAACTGGAAGAGATTGTGGCTCAAAACTTTCCGAAA
ATTATTCACATACTAAGACTTCCAGAACGACGTGGTTCCATCAAAGCGAG
AATGGAGGCAATCAGGGTGTCCAGCTGTCAAGTTTTGGTCTTTCTAGACT
CCCACATCGAAGTCAACACCAATTGGTTGCCTCCCTTGCTGGAACCTATA
GTTATTAACCCACATATAGTCACCCGTCCCATTTTGGATGC

BO17483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-PA 1893 CG31776-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-RA 1964 CG31776-RA 32..907 16..891 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3470213..3470680 16..483 2340 100 Plus
2L 23513712 2L 3470732..3471076 482..826 1725 100 Plus
2L 23513712 2L 3471136..3471201 826..891 330 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:29:13 has no hits.

BO17483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:23 Download gff for BO17483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:36 Download gff for BO17483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 26..907 6..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:28 Download gff for BO17483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 26..907 6..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:28 Download gff for BO17483.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3470734..3471076 484..826 100 -> Plus
2L 3471137..3471201 827..891 100   Plus
2L 3470207..3470680 6..483 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:36 Download gff for BO17483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3470207..3470680 6..483 99 -> Plus
arm_2L 3470734..3471076 484..826 100 -> Plus
arm_2L 3471137..3471201 827..891 100   Plus

BO17483.complete Sequence

1924 bp assembled on 2007-03-23

GenBank Submission: FJ634145

> BO17483.complete
GAAGTTATCAGTCGACATGAATGTGGATCTGAGATTGATTGTGCGCCTGT
TGCTGGCCATTCTATTGACTTCCTTGGTAACTACCATTTTAATGGGCAAG
CAGATACACAGAAGACTCGTGAAGTCCATGGTCAAAACAACCGGCGAAAA
GGATAGTTTGCCAGCAAGGCAGCTCCCAAAAAGGGAGATCAGCCCGAAGG
TCGCAGATTTCCCACCACCACTAACACTGAACCAAACTGAACTGGACATC
TTAAAGATCCAGCGAAACAATAGTTTCCGCCTGCCCCAGCAAGAAGCTAT
TAAGGAGTGGCAGGATGCGATTTTCTTTAAAGAGGATAGTAACCGCAGGG
GATTGGGTGAGCAGGGAAGAGCAGTTCAGTTACCAAACGCTAAATTAAAC
CCCGATGATTTCCAAGACTTCTATGCCGAACTCTCCGATCGCATTCCCCT
GAACAGATCCTTGCCGGATACCAGACCTATAAGTTGCCGGAAACGGAAGT
ATCTGGAGAACCTACCCAATGTGACAGTGATAATAGCCTTTCACGATGAA
CACCTAAGCGTTTTGCTAAGATCTATAACGAGCATTATAAATCGATCTCC
TGTTGAGTTACTCAAGCAGATTGTGCTCGTGGATGACGATAGTAATTTGC
CGGAATTGGGACAACAACTGGAAGAGATTGTGGCTCAAAACTTTCCGAAA
ATTATTCACATACTAAGACTTCCAGAACGACGTGGTTCCATCAAAGCGAG
AATGGAGGCAATCAGGGTGTCCAGCTGTCAAGTTTTGGTCTTTCTAGACT
CCCACATCGAAGTCAACACCAATTGGTTGCCTCCCTTGCTGGAACCTATA
GTTATTAACCCACATATAGTCACCCGTCCCATTTTGGATGCCATCTCACG
CAAGACATTTGCCTATGCCAAACAAAATACGATGACTCGCTCCGGTTTCA
ATTGGTGGCTTGAGTCTGAGAGCTTACCAATTTTTCCTGAGGATAAAAGT
CCTGATTCCACACCCTACCGTACACCGGTTTTATCAGGAGCTATGGCGAT
TGACAGGAACTATTTCTTGAATCTGGGGGGATTTGATGAGCAGCTGGACA
CCTGGGAAGCCGAGAAGTTCGAGATAAGTTTTAAGGTCTGGATGTGTGGT
GGAATGATGCTGTATGTACCTTGCGCCCGGGTGGGTCACATAGGTAAAAG
ACCCATGAAATCGATTAGTAGTCCAGGATACCACAATTTTCTGGCCAGGA
ACTACAAGCGAGTAGCTGAAGTTTGGATGGATAATTACAAAAAGTATGTG
TACGACAAGAATCCGAAGCTCTATAAGATGGCCAATGCTGGTCTGCTTTT
CCAAAGGAAAACCAAGAGAAATGCTCTGGAGTGCAAGACCTTCGATTGGT
ACATGACCAAGGTGGCTCCGGATTTTCTTAAAAGGTACCTAGCATTGGAT
TCGCCTTTGGTTTTCTCCGGGGTCATTGAAAGTGTGGCATTTCCTGGATT
CTGTGTGGACTCCCTGAATTGTAGACACACTAAGCCCGTGGTTTTAGCCC
GGTGCACTGGGCATAATTCAATGCCCGGCGAGCATCAGAACTGGTCCTTA
ACGCAGGATCATGAGATTCAACTGACGAACAGCAAAGATGATTGCTTGGA
AGCGCAGGGCCTACGCTCAAAGTCGGTGTGGCTCTTTCGTTGTCACAAAA
ATGGTGGGAATCAGTACTGGTACTACAATCACCGTCATCGGTGGATCCAA
CAGGGCCAAATATGGGTGTGGTGCCTGGAAGCCCAATTGGCTAGTGGTCA
TAAGGTTGGCAAGGTTCTGGCCAATAAAATCTGCGATAAAAACCAACTGG
AACAGCAGTGGAAAGTTGGGCGAAATGCGCCATATGATCCACAAAGGGAG
CCTCATGCAAGCTTTCTAGACCAT

BO17483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-RA 1893 CG31776-PA 1..1890 17..1906 9450 100 Plus
pgant4-RC 1935 CG31956-PC 1094..1326 1071..1303 235 73.4 Plus
pgant4-RB 1935 CG31956-PB 1094..1326 1071..1303 235 73.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-RA 1964 CG31776-RA 32..1922 16..1906 9455 100 Plus
pgant4-RC 2543 CG31956-RC 1294..1526 1071..1303 235 73.4 Plus
pgant4-RB 2411 CG31956-RB 1162..1394 1071..1303 235 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3471665..3472322 1249..1906 3290 100 Plus
2L 23513712 2L 3470213..3470680 16..483 2340 100 Plus
2L 23513712 2L 3471136..3471559 826..1249 2120 100 Plus
2L 23513712 2L 3470732..3471076 482..826 1725 100 Plus
2L 23513712 2L 3474020..3474141 1071..1192 190 77 Plus
Blast to na_te.dros performed on 2014-11-27 01:00:49 has no hits.

BO17483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:15 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 1..1893 17..1910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:45 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 26..1925 6..1910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:05 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 33..1922 17..1908 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:15 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 26..1925 6..1910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:19 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
CG31776-RA 33..1922 17..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:19 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3470214..3470680 17..483 100 -> Plus
2L 3470734..3471076 484..826 100 -> Plus
2L 3471137..3471559 827..1249 100 -> Plus
2L 3471666..3472322 1250..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:05 Download gff for BO17483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3470734..3471076 484..826 100 -> Plus
arm_2L 3471137..3471559 827..1249 100 -> Plus
arm_2L 3470214..3470680 17..483 100 -> Plus
arm_2L 3471666..3472322 1250..1908 99   Plus

BO17483.pep Sequence

Translation from 16 to 1924

> BO17483.pep
MNVDLRLIVRLLLAILLTSLVTTILMGKQIHRRLVKSMVKTTGEKDSLPA
RQLPKREISPKVADFPPPLTLNQTELDILKIQRNNSFRLPQQEAIKEWQD
AIFFKEDSNRRGLGEQGRAVQLPNAKLNPDDFQDFYAELSDRIPLNRSLP
DTRPISCRKRKYLENLPNVTVIIAFHDEHLSVLLRSITSIINRSPVELLK
QIVLVDDDSNLPELGQQLEEIVAQNFPKIIHILRLPERRGSIKARMEAIR
VSSCQVLVFLDSHIEVNTNWLPPLLEPIVINPHIVTRPILDAISRKTFAY
AKQNTMTRSGFNWWLESESLPIFPEDKSPDSTPYRTPVLSGAMAIDRNYF
LNLGGFDEQLDTWEAEKFEISFKVWMCGGMMLYVPCARVGHIGKRPMKSI
SSPGYHNFLARNYKRVAEVWMDNYKKYVYDKNPKLYKMANAGLLFQRKTK
RNALECKTFDWYMTKVAPDFLKRYLALDSPLVFSGVIESVAFPGFCVDSL
NCRHTKPVVLARCTGHNSMPGEHQNWSLTQDHEIQLTNSKDDCLEAQGLR
SKSVWLFRCHKNGGNQYWYYNHRHRWIQQGQIWVWCLEAQLASGHKVGKV
LANKICDKNQLEQQWKVGRNAPYDPQREPHASFLDH

BO17483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31776-PA 630 CG31776-PA 1..630 1..630 3355 100 Plus
pgant4-PC 644 CG31956-PC 12..629 5..618 1267 42.2 Plus
pgant4-PB 644 CG31956-PB 12..629 5..618 1267 42.2 Plus
pgant6-PC 666 CG2103-PC 10..648 1..618 1121 38.3 Plus
pgant6-PB 666 CG2103-PB 10..648 1..618 1121 38.3 Plus