Clone Sequence Records
BO17484.3prime Sequence
666 bp (566 high quality bases) assembled on 2006-10-13
> BO17484.3prime
ATGGTCTAGAAAGCTTGCATCCCCCAATCCAATGCCCAACTCGCTGTTCG
TATCTTCGCTGTTTGCCTGCACAACTCCATAGGAAGGATTCTCGATTAGC
CGGGAACTTTGCTTGTCGCCATTACGACGACGTCGCTGCATTTCCCGGAG
CACCAACAGGGGAATCATTACCAGAGCCAGGCAGAGTAAAATTGCCAGGA
CAAACATGGACCAATGGAATGCCAGGTGTTTGCCAGTGGTCGGACTTATT
AGGGATTCAAAGCCCGCACAGGTGTCTGGTGCCACGCATTCCTGCCCAGA
AAGGCATCCTTTCGAGCAAATCGGTTCGCATTCGGTGCTGCTGTCGGGCA
AAAATCGGTAACGAGGTAGGCAGGCGCACTTCTCCGGCGCAACGCACTCG
GCATTAATGCACTGCTCCTGGCACTGGGGACGACATGAGTTCGGTTCACT
GGAGTTGGTAACCACATGGCCGGGATCGCATTCACAGTGTCCCGGAGAGG
AGCATCGCCCATTCTCGCATCTCGGACGGCAGGAGGGTACACACTCGTAC
GGCACCTTGGTGTCTTCGTAGCCAGCGAAGCAGGCACAGCTGTTGGGCTC
TACGCACGTTCCATTCCTGCATCCTGGCTGGCACTCGGGATCACAGATGG
ACGTTGATCCCGGCCT
BO17484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18146-PB | 2106 | CG18146-RB | 1456..2103 | 666..19 | 3215 | 99.8 | Minus |
CG18146-PA | 1947 | CG18146-RA | 1297..1944 | 666..19 | 3215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimC2-RC | 2819 | CG18146-RC | 1540..2187 | 666..19 | 3225 | 99.8 | Minus |
NimC2-RA | 2343 | CG18146-RA | 1381..2028 | 666..19 | 3225 | 99.8 | Minus |
NimC2-RB | 2502 | CG18146-RB | 1540..2187 | 666..19 | 3225 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13981990..13982637 | 666..19 | 3225 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:58:44 has no hits.
BO17484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:24 Download gff for
BO17484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18146-PA | 1297..1947 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:53 Download gff for
BO17484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RB | 1540..2190 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:22:31 Download gff for
BO17484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RB | 1540..2190 | 15..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:22:31 Download gff for
BO17484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13981990..13982640 | 15..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:53 Download gff for
BO17484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13981990..13982640 | 15..666 | 99 | | Minus |
BO17484.5prime Sequence
636 bp (634 high quality bases) assembled on 2006-10-13
> BO17484.5prime
GAAGTTATCAGTCGACATGCTTCTTCTCTTCTTGGTTTTACTGAGCGGCC
TTCAGGTGCAGGGCTGTGTCAAACAAGCTCACGAGTGTGTGCCGCTGTGC
AATGATTGTGGAGCCTCGGGAAAATGCCTTTTGCCCAATGTGTGTTTGTG
TGGAAAGGGTTATGTAAGTCGTAAGGATCACGGTCACTGTGAGCCGGAGT
GCAGTGAGTCCTGCGTGAACGGAAAATGTGTGGCACCGGATGAGTGTGAA
TGCCTTGCTGGCCATCGTTTCGTGAATGGCTCTCAAACGGCATGTGAGCC
AATTTGTGTGGAGGACTGTGCCAATGGTCGTTGTCTGGAGACGGGAAAAT
GCCTGTGCAACAATGGCTATCAGCGGGATGAAAAGCTTAAGAAATGTGTG
CCCATCTGCCAGGATGCCTGCTATCATGGCGACTGTGTGGCGCCCAACGA
GTGTCGCTGTCATCCCGGTCATGAGCAGCGCTTGGGAGTGCCGTGGATTT
GCGATCCGATCTGCTCGAGCGGCTGCGCCAATGGCTATTGCCAGGGTGCC
GAGGTGTGCGCCTGCAAGATGGGCTATGCCCACAAGGATAACACCCTTGC
CTCAGGCTGTGAGCCTGTGTGCAATCCACCCTGCAC
BO17484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18146-PA | 1947 | CG18146-RA | 1..620 | 17..636 | 3100 | 100 | Plus |
CG18146-PB | 2106 | CG18146-RB | 224..779 | 81..636 | 2780 | 100 | Plus |
CG18146-PB | 2106 | CG18146-RB | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimC2-RA | 2343 | CG18146-RA | 85..704 | 17..636 | 3100 | 100 | Plus |
NimC2-RC | 2819 | CG18146-RC | 308..863 | 81..636 | 2780 | 100 | Plus |
NimC2-RB | 2502 | CG18146-RB | 308..863 | 81..636 | 2780 | 100 | Plus |
NimC2-RC | 2819 | CG18146-RC | 85..149 | 17..81 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13980616..13981170 | 82..636 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 13980210..13980274 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:55:35 has no hits.
BO17484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:24 Download gff for
BO17484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18146-PA | 1..620 | 17..636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:13 Download gff for
BO17484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RA | 85..704 | 17..636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:52 Download gff for
BO17484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RA | 85..704 | 17..636 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:52 Download gff for
BO17484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
2L | 13980616..13981170 | 82..636 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:13 Download gff for
BO17484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
arm_2L | 13980616..13981170 | 82..636 | 100 | | Plus |
BO17484.complete Sequence
1978 bp assembled on 2007-03-23
GenBank Submission: FJ634146
> BO17484.complete
GAAGTTATCAGTCGACATGCTTCTTCTCTTCTTGGTTTTACTGAGCGGCC
TTCAGGTGCAGGGCTGTGTCAAACAAGCTCACGAGTGTGTGCCGCTGTGC
AATGATTGTGGAGCCTCGGGAAAATGCCTTTTGCCCAATGTGTGTTTGTG
TGGAAAGGGTTATGTAAGTCGTAAGGATCACGGTCACTGTGAGCCGGAGT
GCAGTGAGTCCTGCGTGAACGGAAAATGTGTGGCACCGGATGAGTGTGAA
TGCCTTGCTGGCCATCGTTTCGTGAATGGCTCTCAAACGGCATGTGAGCC
AATTTGTGTGGAGGACTGTGCCAATGGTCGTTGTCTGGAGACGGGAAAAT
GCCTGTGCAACAATGGCTATCAGCGGGATGAAAAGCTTAAGAAATGTGTG
CCCATCTGCCAGGATGCCTGCTATCATGGCGACTGTGTGGCGCCCAACGA
GTGTCGCTGTCATCCCGGTCATGAGCAGCGCTTGGGAGTGCCGTGGATTT
GCGATCCGATCTGCTCGAGCGGCTGCGCCAATGGCTATTGCCAGGGTGCC
GAGGTGTGCGCCTGCAAGATGGGCTATGCCCACAAGGATAACACCCTTGC
CTCAGGCTGTGAGCCTGTGTGCAATCCACCCTGCACGAATGGCACTTGCA
TCTCACCCGGCCACTGCGCCTGCTCCGAAGGTCACGTATTTGCCGAGGGA
TCGCGTCACGAGTGTGTTCCCAGCTGCCGTTCCGGTTGCGAGAATGGATA
TTGTAGTTCTCCTGGCCGCTGTGAGTGCCACGAGGGATTCGAGAAGACAT
CGCCGCACCGCTGTTCACCCACATGCCGACCGGGCTGTGGCCAGAACTCC
CGCTGCGCCGCTCCAGACACCTGTGCCTGCGATGTCGGCTACGTCTTTGT
CAACGGCAGCACCACCGAATGCGAGCCCTTCTGTCCCAGGAACTGCCGGA
ATGGAATCTGCAGTAGTCCAGGTGTCTGCACATGCTTGGAAGGTTTTCAG
GCCCTTCTCTCGTTCTACTGCATACCAGTTTGCTCGAAAACCTGCATTCA
TGGCAGTTGTGTGGCGCCCAACGAGTGTCGCTGCTTCACCGGCTACCGAC
CAAATCCCAGTCTGGGAGCGAATGTCTGCGAGCCCATCTGCAGCCAGGGA
TGTGTTCATGGATTTTGCATCGCCCCAGAGATCTGTCAATGTGATCTGGG
CTTTATCAAACGATGGGCCACTGGGACCTGTGAGCCGCACTGCCCACAGA
AGTGCGTGAACAGCCATTGCTTGGGATCGGGAGTGTGTCGCTGCTACGAG
GGATACAAGCTGAGGCCGGGATCAACGTCCATCTGTGATCCGGAGTGCCA
GCCAGGATGCAGGAATGGAACGTGCGTAGAGCCCAACAGCTGTGCCTGCT
TCGCTGGCTACGAAGACACCAAGGTGCCGTACGAGTGTGTACCCTCCTGC
CGTCCGAGATGCGAGAATGGGCGATGCTCCTCTCCGGGACACTGTGAATG
CGATCCCGGCCATGTGGTTACCAACTCCAGTGAACCGAACTCATGTCGTC
CCCAGTGCCAGGAGCAGTGCATTAATGCCGAGTGCGTTGCGCCGGAGAAG
TGCGCCTGCCTACCTCGTTACCGATTTTTGCCCGACAGCAGCACCGAATG
CGAACCGATTTGCTCGAAAGGATGCCTTTCTGGGCAGGAATGCGTGGCAC
CAGACACCTGTGCGGGCTTTGAATCCCTAATAAGTCCGACCACTGGCAAA
CACCTGGCATTCCATTGGTCCATGTTTGTCCTGGCAATTTTACTCTGCCT
GGCTCTGGTAATGATTCCCCTGTTGGTGCTCCGGGAAATGCAGCGACGTC
GTCGTAATGGCGACAAGCAAAGTTCCCGGCTAATCGAGAATCCTTCCTAT
GGAGTTGTGCAGGCAAACAGCGAAGATACGAACAGCGAGTTGGGCATTGG
ATTGGGGGATGCAAGCTTTCTAGACCAT
BO17484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimC2-RA | 1947 | CG18146-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
NimC2-RC | 2106 | CG18146-PC | 224..2103 | 81..1960 | 9400 | 100 | Plus |
NimC2-RB | 2106 | CG18146-PB | 224..2103 | 81..1960 | 9400 | 100 | Plus |
NimC2-RC | 2106 | CG18146-PC | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimC2-RA | 2343 | CG18146-RA | 85..2028 | 17..1960 | 9720 | 100 | Plus |
NimC2-RC | 2819 | CG18146-RC | 308..2187 | 81..1960 | 9400 | 100 | Plus |
NimC2-RB | 2502 | CG18146-RB | 308..2187 | 81..1960 | 9400 | 100 | Plus |
NimC2-RC | 2819 | CG18146-RC | 85..149 | 17..81 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13981675..13982637 | 998..1960 | 4815 | 100 | Plus |
2L | 23513712 | 2L | 13980616..13981535 | 82..1001 | 4600 | 100 | Plus |
2L | 23513712 | 2L | 13980210..13980274 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:44:01 has no hits.
BO17484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:35 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18146-RA | 1..1947 | 17..1964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:07 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nimC2-RA | 51..1997 | 17..1964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:31 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RA | 85..2028 | 17..1962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:35 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18146-RA | 51..1997 | 17..1964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:41 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimC2-RA | 85..2028 | 17..1962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:41 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
2L | 13980616..13981534 | 82..1000 | 100 | -> | Plus |
2L | 13981678..13982637 | 1001..1962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:31 Download gff for
BO17484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
arm_2L | 13980616..13981534 | 82..1000 | 100 | -> | Plus |
arm_2L | 13981678..13982637 | 1001..1962 | 99 | | Plus |
BO17484.pep Sequence
Translation from 16 to 1978
> BO17484.pep
MLLLFLVLLSGLQVQGCVKQAHECVPLCNDCGASGKCLLPNVCLCGKGYV
SRKDHGHCEPECSESCVNGKCVAPDECECLAGHRFVNGSQTACEPICVED
CANGRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNECRCHP
GHEQRLGVPWICDPICSSGCANGYCQGAEVCACKMGYAHKDNTLASGCEP
VCNPPCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSGCENGYCSSPG
RCECHEGFEKTSPHRCSPTCRPGCGQNSRCAAPDTCACDVGYVFVNGSTT
ECEPFCPRNCRNGICSSPGVCTCLEGFQALLSFYCIPVCSKTCIHGSCVA
PNECRCFTGYRPNPSLGANVCEPICSQGCVHGFCIAPEICQCDLGFIKRW
ATGTCEPHCPQKCVNSHCLGSGVCRCYEGYKLRPGSTSICDPECQPGCRN
GTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHV
VTNSSEPNSCRPQCQEQCINAECVAPEKCACLPRYRFLPDSSTECEPICS
KGCLSGQECVAPDTCAGFESLISPTTGKHLAFHWSMFVLAILLCLALVMI
PLLVLREMQRRRRNGDKQSSRLIENPSYGVVQANSEDTNSELGIGLGDAS
FLDH
BO17484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimC2-PA | 648 | CG18146-PA | 1..648 | 1..648 | 3785 | 100 | Plus |
NimC2-PC | 701 | CG18146-PC | 1..701 | 1..648 | 3714 | 92.3 | Plus |
NimC2-PB | 701 | CG18146-PB | 1..701 | 1..648 | 3714 | 92.3 | Plus |
eater-PC | 1074 | CG6124-PC | 286..809 | 16..566 | 1248 | 41 | Plus |
eater-PC | 1074 | CG6124-PC | 119..677 | 19..566 | 1200 | 38.9 | Plus |
eater-PC | 1074 | CG6124-PC | 192..710 | 20..566 | 1195 | 39.3 | Plus |
eater-PC | 1074 | CG6124-PC | 88..611 | 21..566 | 1180 | 39.5 | Plus |
eater-PC | 1074 | CG6124-PC | 424..1055 | 22..617 | 1158 | 35.7 | Plus |
eater-PC | 1074 | CG6124-PC | 41..545 | 45..566 | 1047 | 37.6 | Plus |
NimC1-PC | 622 | CG8942-PC | 39..523 | 118..559 | 719 | 33.5 | Plus |
eater-PC | 1074 | CG6124-PC | 31..380 | 209..566 | 683 | 36 | Plus |