Clone BO17484 Report

Search the DGRC for BO17484

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptnimC2-RA
Protein status:BO17484.pep: validated full length
Sequenced Size:1978

Clone Sequence Records

BO17484.3prime Sequence

666 bp (566 high quality bases) assembled on 2006-10-13

> BO17484.3prime
ATGGTCTAGAAAGCTTGCATCCCCCAATCCAATGCCCAACTCGCTGTTCG
TATCTTCGCTGTTTGCCTGCACAACTCCATAGGAAGGATTCTCGATTAGC
CGGGAACTTTGCTTGTCGCCATTACGACGACGTCGCTGCATTTCCCGGAG
CACCAACAGGGGAATCATTACCAGAGCCAGGCAGAGTAAAATTGCCAGGA
CAAACATGGACCAATGGAATGCCAGGTGTTTGCCAGTGGTCGGACTTATT
AGGGATTCAAAGCCCGCACAGGTGTCTGGTGCCACGCATTCCTGCCCAGA
AAGGCATCCTTTCGAGCAAATCGGTTCGCATTCGGTGCTGCTGTCGGGCA
AAAATCGGTAACGAGGTAGGCAGGCGCACTTCTCCGGCGCAACGCACTCG
GCATTAATGCACTGCTCCTGGCACTGGGGACGACATGAGTTCGGTTCACT
GGAGTTGGTAACCACATGGCCGGGATCGCATTCACAGTGTCCCGGAGAGG
AGCATCGCCCATTCTCGCATCTCGGACGGCAGGAGGGTACACACTCGTAC
GGCACCTTGGTGTCTTCGTAGCCAGCGAAGCAGGCACAGCTGTTGGGCTC
TACGCACGTTCCATTCCTGCATCCTGGCTGGCACTCGGGATCACAGATGG
ACGTTGATCCCGGCCT

BO17484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18146-PB 2106 CG18146-RB 1456..2103 666..19 3215 99.8 Minus
CG18146-PA 1947 CG18146-RA 1297..1944 666..19 3215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
NimC2-RC 2819 CG18146-RC 1540..2187 666..19 3225 99.8 Minus
NimC2-RA 2343 CG18146-RA 1381..2028 666..19 3225 99.8 Minus
NimC2-RB 2502 CG18146-RB 1540..2187 666..19 3225 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13981990..13982637 666..19 3225 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 12:58:44 has no hits.

BO17484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:24 Download gff for BO17484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18146-PA 1297..1947 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:53 Download gff for BO17484.3prime
Subject Subject Range Query Range Percent Splice Strand
NimC2-RB 1540..2190 15..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:22:31 Download gff for BO17484.3prime
Subject Subject Range Query Range Percent Splice Strand
NimC2-RB 1540..2190 15..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:22:31 Download gff for BO17484.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13981990..13982640 15..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:53 Download gff for BO17484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13981990..13982640 15..666 99   Minus

BO17484.5prime Sequence

636 bp (634 high quality bases) assembled on 2006-10-13

> BO17484.5prime
GAAGTTATCAGTCGACATGCTTCTTCTCTTCTTGGTTTTACTGAGCGGCC
TTCAGGTGCAGGGCTGTGTCAAACAAGCTCACGAGTGTGTGCCGCTGTGC
AATGATTGTGGAGCCTCGGGAAAATGCCTTTTGCCCAATGTGTGTTTGTG
TGGAAAGGGTTATGTAAGTCGTAAGGATCACGGTCACTGTGAGCCGGAGT
GCAGTGAGTCCTGCGTGAACGGAAAATGTGTGGCACCGGATGAGTGTGAA
TGCCTTGCTGGCCATCGTTTCGTGAATGGCTCTCAAACGGCATGTGAGCC
AATTTGTGTGGAGGACTGTGCCAATGGTCGTTGTCTGGAGACGGGAAAAT
GCCTGTGCAACAATGGCTATCAGCGGGATGAAAAGCTTAAGAAATGTGTG
CCCATCTGCCAGGATGCCTGCTATCATGGCGACTGTGTGGCGCCCAACGA
GTGTCGCTGTCATCCCGGTCATGAGCAGCGCTTGGGAGTGCCGTGGATTT
GCGATCCGATCTGCTCGAGCGGCTGCGCCAATGGCTATTGCCAGGGTGCC
GAGGTGTGCGCCTGCAAGATGGGCTATGCCCACAAGGATAACACCCTTGC
CTCAGGCTGTGAGCCTGTGTGCAATCCACCCTGCAC

BO17484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18146-PA 1947 CG18146-RA 1..620 17..636 3100 100 Plus
CG18146-PB 2106 CG18146-RB 224..779 81..636 2780 100 Plus
CG18146-PB 2106 CG18146-RB 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
NimC2-RA 2343 CG18146-RA 85..704 17..636 3100 100 Plus
NimC2-RC 2819 CG18146-RC 308..863 81..636 2780 100 Plus
NimC2-RB 2502 CG18146-RB 308..863 81..636 2780 100 Plus
NimC2-RC 2819 CG18146-RC 85..149 17..81 325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13980616..13981170 82..636 2775 100 Plus
2L 23513712 2L 13980210..13980274 17..81 325 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:55:35 has no hits.

BO17484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:24 Download gff for BO17484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18146-PA 1..620 17..636 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:13 Download gff for BO17484.5prime
Subject Subject Range Query Range Percent Splice Strand
NimC2-RA 85..704 17..636 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:52 Download gff for BO17484.5prime
Subject Subject Range Query Range Percent Splice Strand
NimC2-RA 85..704 17..636 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:52 Download gff for BO17484.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13980210..13980274 17..81 100 -> Plus
2L 13980616..13981170 82..636 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:13 Download gff for BO17484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13980210..13980274 17..81 100 -> Plus
arm_2L 13980616..13981170 82..636 100   Plus

BO17484.complete Sequence

1978 bp assembled on 2007-03-23

GenBank Submission: FJ634146

> BO17484.complete
GAAGTTATCAGTCGACATGCTTCTTCTCTTCTTGGTTTTACTGAGCGGCC
TTCAGGTGCAGGGCTGTGTCAAACAAGCTCACGAGTGTGTGCCGCTGTGC
AATGATTGTGGAGCCTCGGGAAAATGCCTTTTGCCCAATGTGTGTTTGTG
TGGAAAGGGTTATGTAAGTCGTAAGGATCACGGTCACTGTGAGCCGGAGT
GCAGTGAGTCCTGCGTGAACGGAAAATGTGTGGCACCGGATGAGTGTGAA
TGCCTTGCTGGCCATCGTTTCGTGAATGGCTCTCAAACGGCATGTGAGCC
AATTTGTGTGGAGGACTGTGCCAATGGTCGTTGTCTGGAGACGGGAAAAT
GCCTGTGCAACAATGGCTATCAGCGGGATGAAAAGCTTAAGAAATGTGTG
CCCATCTGCCAGGATGCCTGCTATCATGGCGACTGTGTGGCGCCCAACGA
GTGTCGCTGTCATCCCGGTCATGAGCAGCGCTTGGGAGTGCCGTGGATTT
GCGATCCGATCTGCTCGAGCGGCTGCGCCAATGGCTATTGCCAGGGTGCC
GAGGTGTGCGCCTGCAAGATGGGCTATGCCCACAAGGATAACACCCTTGC
CTCAGGCTGTGAGCCTGTGTGCAATCCACCCTGCACGAATGGCACTTGCA
TCTCACCCGGCCACTGCGCCTGCTCCGAAGGTCACGTATTTGCCGAGGGA
TCGCGTCACGAGTGTGTTCCCAGCTGCCGTTCCGGTTGCGAGAATGGATA
TTGTAGTTCTCCTGGCCGCTGTGAGTGCCACGAGGGATTCGAGAAGACAT
CGCCGCACCGCTGTTCACCCACATGCCGACCGGGCTGTGGCCAGAACTCC
CGCTGCGCCGCTCCAGACACCTGTGCCTGCGATGTCGGCTACGTCTTTGT
CAACGGCAGCACCACCGAATGCGAGCCCTTCTGTCCCAGGAACTGCCGGA
ATGGAATCTGCAGTAGTCCAGGTGTCTGCACATGCTTGGAAGGTTTTCAG
GCCCTTCTCTCGTTCTACTGCATACCAGTTTGCTCGAAAACCTGCATTCA
TGGCAGTTGTGTGGCGCCCAACGAGTGTCGCTGCTTCACCGGCTACCGAC
CAAATCCCAGTCTGGGAGCGAATGTCTGCGAGCCCATCTGCAGCCAGGGA
TGTGTTCATGGATTTTGCATCGCCCCAGAGATCTGTCAATGTGATCTGGG
CTTTATCAAACGATGGGCCACTGGGACCTGTGAGCCGCACTGCCCACAGA
AGTGCGTGAACAGCCATTGCTTGGGATCGGGAGTGTGTCGCTGCTACGAG
GGATACAAGCTGAGGCCGGGATCAACGTCCATCTGTGATCCGGAGTGCCA
GCCAGGATGCAGGAATGGAACGTGCGTAGAGCCCAACAGCTGTGCCTGCT
TCGCTGGCTACGAAGACACCAAGGTGCCGTACGAGTGTGTACCCTCCTGC
CGTCCGAGATGCGAGAATGGGCGATGCTCCTCTCCGGGACACTGTGAATG
CGATCCCGGCCATGTGGTTACCAACTCCAGTGAACCGAACTCATGTCGTC
CCCAGTGCCAGGAGCAGTGCATTAATGCCGAGTGCGTTGCGCCGGAGAAG
TGCGCCTGCCTACCTCGTTACCGATTTTTGCCCGACAGCAGCACCGAATG
CGAACCGATTTGCTCGAAAGGATGCCTTTCTGGGCAGGAATGCGTGGCAC
CAGACACCTGTGCGGGCTTTGAATCCCTAATAAGTCCGACCACTGGCAAA
CACCTGGCATTCCATTGGTCCATGTTTGTCCTGGCAATTTTACTCTGCCT
GGCTCTGGTAATGATTCCCCTGTTGGTGCTCCGGGAAATGCAGCGACGTC
GTCGTAATGGCGACAAGCAAAGTTCCCGGCTAATCGAGAATCCTTCCTAT
GGAGTTGTGCAGGCAAACAGCGAAGATACGAACAGCGAGTTGGGCATTGG
ATTGGGGGATGCAAGCTTTCTAGACCAT

BO17484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
NimC2-RA 1947 CG18146-PA 1..1944 17..1960 9720 100 Plus
NimC2-RC 2106 CG18146-PC 224..2103 81..1960 9400 100 Plus
NimC2-RB 2106 CG18146-PB 224..2103 81..1960 9400 100 Plus
NimC2-RC 2106 CG18146-PC 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
NimC2-RA 2343 CG18146-RA 85..2028 17..1960 9720 100 Plus
NimC2-RC 2819 CG18146-RC 308..2187 81..1960 9400 100 Plus
NimC2-RB 2502 CG18146-RB 308..2187 81..1960 9400 100 Plus
NimC2-RC 2819 CG18146-RC 85..149 17..81 325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13981675..13982637 998..1960 4815 100 Plus
2L 23513712 2L 13980616..13981535 82..1001 4600 100 Plus
2L 23513712 2L 13980210..13980274 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:44:01 has no hits.

BO17484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:35 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
CG18146-RA 1..1947 17..1964 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:07 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
nimC2-RA 51..1997 17..1964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:31 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
NimC2-RA 85..2028 17..1962 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:35 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
CG18146-RA 51..1997 17..1964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:41 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
NimC2-RA 85..2028 17..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:41 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13980210..13980274 17..81 100 -> Plus
2L 13980616..13981534 82..1000 100 -> Plus
2L 13981678..13982637 1001..1962 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:31 Download gff for BO17484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13980210..13980274 17..81 100 -> Plus
arm_2L 13980616..13981534 82..1000 100 -> Plus
arm_2L 13981678..13982637 1001..1962 99   Plus

BO17484.pep Sequence

Translation from 16 to 1978

> BO17484.pep
MLLLFLVLLSGLQVQGCVKQAHECVPLCNDCGASGKCLLPNVCLCGKGYV
SRKDHGHCEPECSESCVNGKCVAPDECECLAGHRFVNGSQTACEPICVED
CANGRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNECRCHP
GHEQRLGVPWICDPICSSGCANGYCQGAEVCACKMGYAHKDNTLASGCEP
VCNPPCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSGCENGYCSSPG
RCECHEGFEKTSPHRCSPTCRPGCGQNSRCAAPDTCACDVGYVFVNGSTT
ECEPFCPRNCRNGICSSPGVCTCLEGFQALLSFYCIPVCSKTCIHGSCVA
PNECRCFTGYRPNPSLGANVCEPICSQGCVHGFCIAPEICQCDLGFIKRW
ATGTCEPHCPQKCVNSHCLGSGVCRCYEGYKLRPGSTSICDPECQPGCRN
GTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHV
VTNSSEPNSCRPQCQEQCINAECVAPEKCACLPRYRFLPDSSTECEPICS
KGCLSGQECVAPDTCAGFESLISPTTGKHLAFHWSMFVLAILLCLALVMI
PLLVLREMQRRRRNGDKQSSRLIENPSYGVVQANSEDTNSELGIGLGDAS
FLDH

BO17484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
NimC2-PA 648 CG18146-PA 1..648 1..648 3785 100 Plus
NimC2-PC 701 CG18146-PC 1..701 1..648 3714 92.3 Plus
NimC2-PB 701 CG18146-PB 1..701 1..648 3714 92.3 Plus
eater-PC 1074 CG6124-PC 286..809 16..566 1248 41 Plus
eater-PC 1074 CG6124-PC 119..677 19..566 1200 38.9 Plus
eater-PC 1074 CG6124-PC 192..710 20..566 1195 39.3 Plus
eater-PC 1074 CG6124-PC 88..611 21..566 1180 39.5 Plus
eater-PC 1074 CG6124-PC 424..1055 22..617 1158 35.7 Plus
eater-PC 1074 CG6124-PC 41..545 45..566 1047 37.6 Plus
NimC1-PC 622 CG8942-PC 39..523 118..559 719 33.5 Plus
eater-PC 1074 CG6124-PC 31..380 209..566 683 36 Plus