Clone BO17489 Report

Search the DGRC for BO17489

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3056-RB
Protein status:BO17489.pep: validated full length
Sequenced Size:1363

Clone Sequence Records

BO17489.3prime Sequence

330 bp (320 high quality bases) assembled on 2006-10-13

> BO17489.3prime
ATGGTCTAGAAAGCTTGCAATAAATTTCTGTGCATGGTTATATGGATGCG
GTTTTTGAGATCGTGTTGTTCTATTTGATCTACCTCTGTGCGCCATGTGG
TGGAAGTTACCACCACCGCCTCCACCGCCGCCGCCACCACCACCACCGCC
GCCTCCGTGAATGGGCATGCCCATGCCCATGCCCATTCCCATGTTTACGC
CCATGCCCATGTTCATGCCCATCGGGTGCATTTGCTGCATGTGGTGCGGA
TGCGGGCCGCCCATGTTGTGGTGGTTGTTGTTGTTGTTGTTATGATGGTG
GTTGTTGGGGTGATTGTTGTTGNGGTTGAT

BO17489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3056-PB 1332 CG3056-RB 1020..1329 328..19 1531 99.6 Minus
CG3056-PA 1458 CG3056-RA 1020..1266 328..82 1216 99.5 Minus
CG5424-PB 4311 f-RB 873..900 193..166 140 100 Minus
CG5424-PD 4311 f-RD 873..900 193..166 140 100 Minus
CG5424-PC 4530 f-RC 1092..1119 193..166 140 100 Minus
CG5424-PF 5757 f-RF 2331..2358 193..166 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 1181..1490 328..19 1539 99.7 Minus
ssx-RC 3096 CG3056-RC 1222..1531 328..19 1539 99.7 Minus
ssx-RB 3055 CG3056-RB 1181..1490 328..19 1539 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1372803..1373112 328..19 1539 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 16:27:00 has no hits.

BO17489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:25 Download gff for BO17489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3056-PB 1018..1332 15..330 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:01:58 Download gff for BO17489.3prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 1179..1493 15..330 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:20 Download gff for BO17489.3prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 1179..1493 15..330 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:20 Download gff for BO17489.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1372801..1373115 15..330 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:58 Download gff for BO17489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1266834..1267148 15..330 98   Minus

BO17489.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-10-13

> BO17489.5prime
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGC

BO17489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3056-PA 1458 CG3056-RA 1..601 17..617 3005 100 Plus
CG3056-PB 1332 CG3056-RB 1..601 17..617 3005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 161..762 16..617 3010 100 Plus
ssx-RD 2945 CG3056-RD 161..762 16..617 3010 100 Plus
ssx-RB 3055 CG3056-RB 161..762 16..617 3010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1371449..1371774 78..403 1630 100 Plus
X 23542271 X 1371913..1372025 402..514 565 100 Plus
X 23542271 X 1372084..1372191 510..617 540 100 Plus
X 23542271 X 1371307..1371371 16..80 325 100 Plus
X 23542271 X 7085624..7085730 398..292 205 79.4 Minus
Blast to na_te.dros performed 2015-02-11 03:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 550..617 83..150 142 67.6 Plus

BO17489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:26 Download gff for BO17489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3056-PB 1..601 17..617 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:08 Download gff for BO17489.5prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 157..762 10..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:14 Download gff for BO17489.5prime
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 157..762 10..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:14 Download gff for BO17489.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1371303..1371370 10..79 95 -> Plus
X 1371451..1371774 80..403 100 -> Plus
X 1371915..1372022 404..511 100 -> Plus
X 1372086..1372191 512..617 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:08 Download gff for BO17489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1265336..1265403 10..79 95 -> Plus
arm_X 1265484..1265807 80..403 100 -> Plus
arm_X 1265948..1266055 404..511 100 -> Plus
arm_X 1266119..1266224 512..617 100   Plus

BO17489.complete Sequence

1363 bp assembled on 2006-12-18

GenBank Submission: FJ634147

> BO17489.complete
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCAATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGCCAAGGCGGCCCAGTTTATGGCCCAGATCGGAGGTGGCAATGGTGGC
GGAGGCGGTGGTCCGCCCCACATGGGCCCAGGTGGACCGATGCACCCACC
TCATCACCACAATAATCACCATCACAACAACCACCACAATCCGCATATGC
CGCCGCATCATCATCAGCCGCAGCATCCACACCAGCATCCGCAGCACCAT
CCGCAGCTGCACCACATGCAGCACCACCATCCCAACAACCACAACAACAA
TCACCCCAACAACCACCATCATAACAACAACAACAACAACCACCACAACA
TGGGCGGCCCGCATCCGCACCACATGCAGCAAATGCACCCGATGGGCATG
AACATGGGCATGGGCGTAAACATGGGAATGGGCATGGGCATGGGCATGCC
CATTCACGGAGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTGGAGGCGGTG
GTGGTAACTTCCACCACATGGCGCACAGAGGTAGATCAAATAGAACAACA
CGATCTCAAAAACCGCATCCATATAACCATGCACAGAAATTTATTGCAAG
CTTTCTAGACCAT

BO17489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 1332 CG3056-PE 1..1329 17..1345 6645 100 Plus
ssx-RB 1332 CG3056-PB 1..1329 17..1345 6645 100 Plus
ssx-RD 1458 CG3056-PD 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-RE 3635 CG3056-RE 161..1490 16..1345 6650 100 Plus
ssx-RB 3055 CG3056-RB 161..1490 16..1345 6650 100 Plus
ssx-RD 2945 CG3056-RD 161..1427 16..1282 6335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1372460..1373112 693..1345 3265 100 Plus
X 23542271 X 1371449..1371774 78..403 1630 100 Plus
X 23542271 X 1372084..1372267 510..693 920 100 Plus
X 23542271 X 1371913..1372025 402..514 565 100 Plus
X 23542271 X 1371307..1371371 16..80 325 100 Plus
X 23542271 X 7084682..7084818 831..695 205 76.6 Minus
X 23542271 X 7085624..7085730 398..292 205 79.4 Minus
Blast to na_te.dros performed 2014-11-27 14:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 550..617 83..150 142 67.6 Plus

BO17489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:09 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 1..1332 17..1349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:46 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 171..1507 10..1349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:38 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 162..1490 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:09 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3056-RB 171..1507 10..1349 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:56 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
ssx-RB 162..1490 17..1347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:56 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
X 1371451..1371774 80..403 100 -> Plus
X 1371915..1372022 404..511 100 -> Plus
X 1372086..1372267 512..693 100 -> Plus
X 1371308..1371370 17..79 100 -> Plus
X 1372461..1373112 694..1347 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:38 Download gff for BO17489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1265341..1265403 17..79 100 -> Plus
arm_X 1265484..1265807 80..403 100 -> Plus
arm_X 1265948..1266055 404..511 100 -> Plus
arm_X 1266119..1266300 512..693 100 -> Plus
arm_X 1266494..1267145 694..1347 99   Plus

BO17489.pep Sequence

Translation from 16 to 1363

> BO17489.pep
MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQQENGDG
GNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYL
PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDA
IQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFS
PYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQ
PIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNN
HHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNH
HHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGG
GGGGGGGGGGGGGNFHHMAHRGRSNRTTRSQKPHPYNHAQKFIASFLDH

BO17489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
ssx-PE 443 CG3056-PE 1..443 1..443 2519 100 Plus
ssx-PB 443 CG3056-PB 1..443 1..443 2519 100 Plus
ssx-PD 485 CG3056-PD 1..422 1..422 2403 100 Plus
Sxl-PE 314 CG43770-PE 32..281 48..296 786 63.4 Plus
Sxl-PA 314 CG43770-PA 32..281 48..296 786 63.4 Plus