Clone Sequence Records
BO17489.3prime Sequence
330 bp (320 high quality bases) assembled on 2006-10-13
> BO17489.3prime
ATGGTCTAGAAAGCTTGCAATAAATTTCTGTGCATGGTTATATGGATGCG
GTTTTTGAGATCGTGTTGTTCTATTTGATCTACCTCTGTGCGCCATGTGG
TGGAAGTTACCACCACCGCCTCCACCGCCGCCGCCACCACCACCACCGCC
GCCTCCGTGAATGGGCATGCCCATGCCCATGCCCATTCCCATGTTTACGC
CCATGCCCATGTTCATGCCCATCGGGTGCATTTGCTGCATGTGGTGCGGA
TGCGGGCCGCCCATGTTGTGGTGGTTGTTGTTGTTGTTGTTATGATGGTG
GTTGTTGGGGTGATTGTTGTTGNGGTTGAT
BO17489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3056-PB | 1332 | CG3056-RB | 1020..1329 | 328..19 | 1531 | 99.6 | Minus |
CG3056-PA | 1458 | CG3056-RA | 1020..1266 | 328..82 | 1216 | 99.5 | Minus |
CG5424-PB | 4311 | f-RB | 873..900 | 193..166 | 140 | 100 | Minus |
CG5424-PD | 4311 | f-RD | 873..900 | 193..166 | 140 | 100 | Minus |
CG5424-PC | 4530 | f-RC | 1092..1119 | 193..166 | 140 | 100 | Minus |
CG5424-PF | 5757 | f-RF | 2331..2358 | 193..166 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 1181..1490 | 328..19 | 1539 | 99.7 | Minus |
ssx-RC | 3096 | CG3056-RC | 1222..1531 | 328..19 | 1539 | 99.7 | Minus |
ssx-RB | 3055 | CG3056-RB | 1181..1490 | 328..19 | 1539 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1372803..1373112 | 328..19 | 1539 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:27:00 has no hits.
BO17489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:25 Download gff for
BO17489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-PB | 1018..1332 | 15..330 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:01:58 Download gff for
BO17489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 1179..1493 | 15..330 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:20 Download gff for
BO17489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 1179..1493 | 15..330 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:20 Download gff for
BO17489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1372801..1373115 | 15..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:58 Download gff for
BO17489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1266834..1267148 | 15..330 | 98 | | Minus |
BO17489.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-10-13
> BO17489.5prime
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGC
BO17489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3056-PA | 1458 | CG3056-RA | 1..601 | 17..617 | 3005 | 100 | Plus |
CG3056-PB | 1332 | CG3056-RB | 1..601 | 17..617 | 3005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 161..762 | 16..617 | 3010 | 100 | Plus |
ssx-RD | 2945 | CG3056-RD | 161..762 | 16..617 | 3010 | 100 | Plus |
ssx-RB | 3055 | CG3056-RB | 161..762 | 16..617 | 3010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1371449..1371774 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 1371913..1372025 | 402..514 | 565 | 100 | Plus |
X | 23542271 | X | 1372084..1372191 | 510..617 | 540 | 100 | Plus |
X | 23542271 | X | 1371307..1371371 | 16..80 | 325 | 100 | Plus |
X | 23542271 | X | 7085624..7085730 | 398..292 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2015-02-11 03:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 83..150 | 142 | 67.6 | Plus |
BO17489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:26 Download gff for
BO17489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-PB | 1..601 | 17..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:08 Download gff for
BO17489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 157..762 | 10..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:14 Download gff for
BO17489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 157..762 | 10..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:14 Download gff for
BO17489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1371303..1371370 | 10..79 | 95 | -> | Plus |
X | 1371451..1371774 | 80..403 | 100 | -> | Plus |
X | 1371915..1372022 | 404..511 | 100 | -> | Plus |
X | 1372086..1372191 | 512..617 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:08 Download gff for
BO17489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1265336..1265403 | 10..79 | 95 | -> | Plus |
arm_X | 1265484..1265807 | 80..403 | 100 | -> | Plus |
arm_X | 1265948..1266055 | 404..511 | 100 | -> | Plus |
arm_X | 1266119..1266224 | 512..617 | 100 | | Plus |
BO17489.complete Sequence
1363 bp assembled on 2006-12-18
GenBank Submission: FJ634147
> BO17489.complete
GAAGTTATCAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGC
ACGACGACGAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGC
CGTGATGACGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCA
GGAGAATGGAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCG
ACGAGGAGCAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCA
GGCCAACAGCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCT
GATCATCAATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACC
TCTTTAGCGGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTC
AAGACCGGATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTC
GGACTCGGAGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACA
AGCGATTAAAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGAT
ACGAATTTGTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCT
CGACCGCATCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGC
GGGATAAGCTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAAT
AAGCGCGAGGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCC
GGAGGGCGGATCCCAGCCAATCTGGGTACGACTCGCCGAGGAACACGGCA
AGGCCAAGGCGGCCCAGTTTATGGCCCAGATCGGAGGTGGCAATGGTGGC
GGAGGCGGTGGTCCGCCCCACATGGGCCCAGGTGGACCGATGCACCCACC
TCATCACCACAATAATCACCATCACAACAACCACCACAATCCGCATATGC
CGCCGCATCATCATCAGCCGCAGCATCCACACCAGCATCCGCAGCACCAT
CCGCAGCTGCACCACATGCAGCACCACCATCCCAACAACCACAACAACAA
TCACCCCAACAACCACCATCATAACAACAACAACAACAACCACCACAACA
TGGGCGGCCCGCATCCGCACCACATGCAGCAAATGCACCCGATGGGCATG
AACATGGGCATGGGCGTAAACATGGGAATGGGCATGGGCATGGGCATGCC
CATTCACGGAGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTGGAGGCGGTG
GTGGTAACTTCCACCACATGGCGCACAGAGGTAGATCAAATAGAACAACA
CGATCTCAAAAACCGCATCCATATAACCATGCACAGAAATTTATTGCAAG
CTTTCTAGACCAT
BO17489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 1332 | CG3056-PE | 1..1329 | 17..1345 | 6645 | 100 | Plus |
ssx-RB | 1332 | CG3056-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
ssx-RD | 1458 | CG3056-PD | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-RE | 3635 | CG3056-RE | 161..1490 | 16..1345 | 6650 | 100 | Plus |
ssx-RB | 3055 | CG3056-RB | 161..1490 | 16..1345 | 6650 | 100 | Plus |
ssx-RD | 2945 | CG3056-RD | 161..1427 | 16..1282 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1372460..1373112 | 693..1345 | 3265 | 100 | Plus |
X | 23542271 | X | 1371449..1371774 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 1372084..1372267 | 510..693 | 920 | 100 | Plus |
X | 23542271 | X | 1371913..1372025 | 402..514 | 565 | 100 | Plus |
X | 23542271 | X | 1371307..1371371 | 16..80 | 325 | 100 | Plus |
X | 23542271 | X | 7084682..7084818 | 831..695 | 205 | 76.6 | Minus |
X | 23542271 | X | 7085624..7085730 | 398..292 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2014-11-27 14:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 83..150 | 142 | 67.6 | Plus |
BO17489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:09 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 1..1332 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:46 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 171..1507 | 10..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:38 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 162..1490 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:09 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3056-RB | 171..1507 | 10..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:56 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssx-RB | 162..1490 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:56 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1371451..1371774 | 80..403 | 100 | -> | Plus |
X | 1371915..1372022 | 404..511 | 100 | -> | Plus |
X | 1372086..1372267 | 512..693 | 100 | -> | Plus |
X | 1371308..1371370 | 17..79 | 100 | -> | Plus |
X | 1372461..1373112 | 694..1347 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:38 Download gff for
BO17489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1265341..1265403 | 17..79 | 100 | -> | Plus |
arm_X | 1265484..1265807 | 80..403 | 100 | -> | Plus |
arm_X | 1265948..1266055 | 404..511 | 100 | -> | Plus |
arm_X | 1266119..1266300 | 512..693 | 100 | -> | Plus |
arm_X | 1266494..1267145 | 694..1347 | 99 | | Plus |
BO17489.pep Sequence
Translation from 16 to 1363
> BO17489.pep
MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQQENGDG
GNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYL
PQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDA
IQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFS
PYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQ
PIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNN
HHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNH
HHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGG
GGGGGGGGGGGGGNFHHMAHRGRSNRTTRSQKPHPYNHAQKFIASFLDH
BO17489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssx-PE | 443 | CG3056-PE | 1..443 | 1..443 | 2519 | 100 | Plus |
ssx-PB | 443 | CG3056-PB | 1..443 | 1..443 | 2519 | 100 | Plus |
ssx-PD | 485 | CG3056-PD | 1..422 | 1..422 | 2403 | 100 | Plus |
Sxl-PE | 314 | CG43770-PE | 32..281 | 48..296 | 786 | 63.4 | Plus |
Sxl-PA | 314 | CG43770-PA | 32..281 | 48..296 | 786 | 63.4 | Plus |