Clone Sequence Records
BO17491.3prime Sequence
622 bp (585 high quality bases) assembled on 2006-10-13
> BO17491.3prime
ATGGTCTAGAAAGCTTGCCGCTTCCTGGTCGGGCAGGAGTTGCTGGGCCG
TGGGCCTGACGCCAGTTATATGTTCGATTTGAGAGTAAAGCGAATCGCGC
TCCTCCACTAAGCTAGCGTACTTTTGCTGCAGCTCCTTCTCGCGGTCCAT
CTGGCGACGCACGTCCTCTTGCAGCGATTCCAGGCGTCGCGGCACAGCGA
TGGCCTCCTGTTCGCCCAAAAAGCGGAATGTCGAGAGTGAGACAGAGTTC
TGCTCAATCTGGCCGTACGTGTCCTGAAGCTGCTTAATCAGCACCTGGGC
GCGCGCCTGGTAGCCGCCGGTGAGAATCTTCAGCTTCTTCTCGATCTTGC
CGCAGCGCTTGGCTTCCTTGGCCATGTGGCGGCGATTTGTCTCCAGCCGT
TTCTCGGCAGACTCTAATCGATCCTTCTTGCTGGCCAAATTGGCGCGTGT
GTAGCGATGTTGGGAGGGTAGGTAAAGAACCTGGCCGAGGCACTCCTGCC
ACACCTGGGCATAAACGTCTAGGGGCAGTTCGCCATGCGCCATGCGCTCC
TTCACCACCTCCATTTCCTCGGTGAGCATTTGCTTGGCCTTCGCCAACTC
TTGCTGCGAGATGTCCTCGTAG
BO17491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6905-PA | 2445 | CG6905-RA | 1839..2442 | 622..19 | 3020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 1967..2570 | 622..19 | 3020 | 100 | Minus |
| Cdc5-RA | 3346 | CG6905-RA | 2094..2697 | 622..19 | 3020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 358500..359103 | 19..622 | 3020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:39:04 has no hits.
BO17491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:27 Download gff for
BO17491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-PA | 1839..2445 | 15..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:10 Download gff for
BO17491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 2094..2707 | 8..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:17 Download gff for
BO17491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 2094..2707 | 8..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:17 Download gff for
BO17491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358490..359103 | 8..622 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:10 Download gff for
BO17491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358490..359103 | 8..622 | 99 | | Plus |
BO17491.5prime Sequence
650 bp (582 high quality bases) assembled on 2006-10-13
> BO17491.5prime
GAAGTTATCAGTCGACATGCCGCGAATAATGATCAAGGGCGGCGTGTGGC
GCAACACGGAGGATGAAATCCTCAAAGCTGCGGTTATGAAATATGGCAAG
AACCAGTGGAGTCGAATTGCCTCCCTCCTGCACAGAAAGTCCGCCAAGCA
GTGCAAGGCCAGGTGGTACGAGTGGCTGGATCCCAGCATCAAGAAGACCG
AGTGGTCCCGTGAGGAGGACGAGAAACTGCTCCACTTGGCCAAGCTGATG
CCGACGCAGTGGCGCACCATAGCCCCGATCATCGGACGGACGGCAGCCCA
GTGCCTGGAGCGCTATGAGTACTTGCTAGACCAAGCCCAACGCAAAGAGG
ATGGCGAGGACACGATGGATGATCCTCGCAAGTTGAAGCCCGGAGAGATT
GACCCCAATCCAGAGACCAAGCCGGCGCGGCCCGATCCCAAGGACATGGA
CGAGGACGAGCTGGAAATGCTGTCCGAGGCACGCGCCCGCTTGGCCAACA
CGCAAGGCAAGAAAGCCAAGCGCAAGGCTCGCGAAAAGCAACTGGAGGAA
GCCCGCCGCCTGGCCACTCTCCAAAAGCGGCGCGAACTTCGTGCCGCCGG
AATTGGCAGCGGAAATCGCAAGCGGATCAAGGGAATAGACTAACACGCCG
BO17491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6905-PA | 2445 | CG6905-RA | 1..626 | 17..642 | 3130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 129..762 | 17..650 | 3140 | 99.7 | Plus |
| Cdc5-RA | 3346 | CG6905-RA | 256..889 | 17..650 | 3140 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 360367..360689 | 650..328 | 1585 | 99.4 | Minus |
| 3L | 28110227 | 3L | 360749..361016 | 327..60 | 1340 | 100 | Minus |
| 3L | 28110227 | 3L | 361083..361128 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:32:07 has no hits.
BO17491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:27 Download gff for
BO17491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-PA | 1..634 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:22:44 Download gff for
BO17491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 252..889 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:30 Download gff for
BO17491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 252..889 | 9..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:30 Download gff for
BO17491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 360367..360689 | 328..650 | 99 | <- | Minus |
| 3L | 360749..361014 | 62..327 | 100 | <- | Minus |
| 3L | 361084..361132 | 9..61 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:22:44 Download gff for
BO17491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 360367..360689 | 328..650 | 99 | <- | Minus |
| arm_3L | 360749..361014 | 62..327 | 100 | <- | Minus |
| arm_3L | 361084..361132 | 9..61 | 92 | | Minus |
BO17491.complete Sequence
2476 bp assembled on 2006-12-18
GenBank Submission: FJ634148
> BO17491.complete
GAAGTTATCAGTCGACATGCCGCGAATAATGATCAAGGGCGGCGTGTGGC
GCAACACGGAGGATGAAATCCTCAAAGCTGCGGTTATGAAATATGGCAAG
AACCAGTGGAGTCGAATTGCCTCCCTCCTGCACAGAAAGTCCGCCAAGCA
GTGCAAGGCCAGGTGGTACGAGTGGCTGGATCCCAGCATCAAGAAGACCG
AGTGGTCCCGTGAGGAGGACGAGAAACTGCTCCACTTGGCCAAGCTGATG
CCGACGCAGTGGCGCACCATAGCCCCGATCATCGGACGGACGGCAGCCCA
GTGCCTGGAGCGCTATGAGTACTTGCTAGACCAAGCCCAACGCAAAGAGG
ATGGCGAGGACACGATGGATGATCCTCGCAAGTTGAAGCCCGGAGAGATT
GACCCCAATCCAGAGACCAAGCCGGCGCGGCCCGATCCCAAGGACATGGA
CGAGGACGAGCTGGAAATGCTGTCCGAGGCACGCGCCCGCTTGGCCAACA
CGCAAGGCAAGAAAGCCAAGCGCAAGGCTCGCGAAAAGCAACTGGAGGAA
GCCCGCCGCCTGGCCACTCTCCAAAAGCGGCGCGAACTTCGTGCCGCCGG
AATTGGCAGCGGAAATCGCAAGCGGATCAAGGGAATAGACTACAACGCCG
AGATTCCCTTCGAAAAGCGACCTGCCCACGGATTCTACGACACTTCCGAG
GAACACTTGCAGAAAAATGAACCCGACTTCAACAAGATGCGGCAGCAGGA
CCTAGATGGAGAACTCCGCTCAGAGAAGGAGGAACGCGAACGCAAGCGGG
ACAAGCAGAAGCTGAAGCAGCGCAAAGAGAATGAAGTGCCCACCGCAATG
CTGCAAAACATGGAGCCCGAGCGGAAGCGCTCCAAACTAGTCCTGCCTAC
GCCGCAGATTTCCGACATGGAACTACAGCAGGTAGTCAAGCTGGGACGCG
CCAGTGAGATGGCAAAGGAAATTGCCGGTGAGAGCGGCATAGAGACGACG
GATGCTTTGCTAGCCGACTACTCCATTACACCCCAGGTAGCAGCCACTCC
ACGTACTCCGGCTCCGTACACCGATCGCATCATGCAGGAGGCCCAAAACA
TGATGGCCCTCACCCACACAGAGACGCCACTCAAAGGTGGCCTGAACACA
CCGCTGCACGAGTCAGACTTCTCCGGCGTGCTGCCCAAGGCGGCCTCCAT
CGCCACGCCTAACACAGTGATTGCCACGCCGTTTAGAACCCAACGCGAGG
GCGGAGCAGCCACTCCCGGCGGATTCCAAACGCCCTCCTCCGGAGCCCTA
GTTCCCGTAAAGGGGGCAGGAGGGGCTACGGGTGTCGTCAATACACCTGC
CTACGTGAGGGACAAGCTAAGCATCAATCCTGAGGAGAGTATGGGCGTCA
CCGAGACCCCAGCACATTACAAAAACTACCAAAAGCAACTAAAGTCTACA
CTGCGTGACGGTCTCTCCACGCTGCCCGCTCCACGGAATGACTATGAGAT
CGTGGTGCCTGAGCAGGAGGAAAGCGAACGCATTGAGACCAACTCAGAAC
CCGCCGTCGAGGATCAGGCGGATGTCGACGCCAGGTTATTGGCTGAACAA
GAGGCGCGCCGAAAGCGAGAGCTAGAGAAGCGCTCCCAGGTTATTCAGCG
TAGTCTCCCGCGACCAACTGAAGTGAACACCAAGATTCTGCGACCGCAGT
CCGAGAAACAGAACCTTACGGAACAGCAGCAGGCCGAAGAGCTGATTAAA
CACGAAATGATCACCATGCAGCTGTACGACTCGGTCAAGGATCCCGTGCC
TGGTCAATCGCAGCACAAGTTGGAACAGCTACAAAGCTACTTTAAGGCCA
ATCCCTACGAGGACATCTCGCAGCAAGAGTTGGCGAAGGCCAAGCAAATG
CTCACCGAGGAAATGGAGGTGGTGAAGGAGCGCATGGCGCATGGCGAACT
GCCCCTAGACGTTTATGCCCAGGTGTGGCAGGAGTGCCTCGGCCAGGTTC
TTTACCTACCCTCCCAACATCGCTACACACGCGCCAATTTGGCCAGCAAG
AAGGATCGATTAGAGTCTGCCGAGAAACGGCTGGAGACAAATCGCCGCCA
CATGGCCAAGGAAGCCAAGCGCTGCGGCAAGATCGAGAAGAAGCTGAAGA
TTCTCACCGGCGGCTACCAGGCGCGCGCCCAGGTGCTGATTAAGCAGCTT
CAGGACACGTACGGCCAGATTGAGCAGAACTCTGTCTCACTCTCGACATT
CCGCTTTTTGGGCGAACAGGAGGCCATCGCTGTGCCGCGACGCCTGGAAT
CGCTGCAAGAGGACGTGCGTCGCCAGATGGACCGCGAGAAGGAGCTGCAG
CAAAAGTACGCTAGCTTAGTGGAGGAGCGCGATTCGCTTTACTCTCAAAT
CGAACATATAACTGGCGTCAGGCCCACGGCCCAGCAACTCCTGCCCGACC
AGGAAGCGGCAAGCTTTCTAGACCAT
BO17491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 2445 | CG6905-PB | 1..2442 | 17..2458 | 12210 | 100 | Plus |
| Cdc5-RA | 2445 | CG6905-PA | 1..2442 | 17..2458 | 12210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-RB | 3219 | CG6905-RB | 129..2570 | 17..2458 | 12210 | 100 | Plus |
| Cdc5-RA | 3346 | CG6905-RA | 256..2697 | 17..2458 | 12210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 359245..360689 | 1772..328 | 7225 | 100 | Minus |
| 3L | 28110227 | 3L | 358500..359185 | 2458..1773 | 3430 | 100 | Minus |
| 3L | 28110227 | 3L | 360749..361016 | 327..60 | 1340 | 100 | Minus |
| 3L | 28110227 | 3L | 361083..361128 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:17:27 has no hits.
BO17491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:10 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 1..2445 | 17..2462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:48 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 252..2707 | 9..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:59 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 256..2697 | 17..2460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:10 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6905-RA | 252..2707 | 9..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:52 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc5-RA | 256..2697 | 17..2460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:52 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 358498..359185 | 1773..2460 | 99 | <- | Minus |
| 3L | 359245..360689 | 328..1772 | 100 | <- | Minus |
| 3L | 360749..361014 | 62..327 | 100 | <- | Minus |
| 3L | 361084..361128 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:59 Download gff for
BO17491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 358498..359185 | 1773..2460 | 99 | <- | Minus |
| arm_3L | 359245..360689 | 328..1772 | 100 | <- | Minus |
| arm_3L | 360749..361014 | 62..327 | 100 | <- | Minus |
| arm_3L | 361084..361128 | 17..61 | 100 | | Minus |
BO17491.pep Sequence
Translation from 16 to 2476
> BO17491.pep
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW
YEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERY
EYLLDQAQRKEDGEDTMDDPRKLKPGEIDPNPETKPARPDPKDMDEDELE
MLSEARARLANTQGKKAKRKAREKQLEEARRLATLQKRRELRAAGIGSGN
RKRIKGIDYNAEIPFEKRPAHGFYDTSEEHLQKNEPDFNKMRQQDLDGEL
RSEKEERERKRDKQKLKQRKENEVPTAMLQNMEPERKRSKLVLPTPQISD
MELQQVVKLGRASEMAKEIAGESGIETTDALLADYSITPQVAATPRTPAP
YTDRIMQEAQNMMALTHTETPLKGGLNTPLHESDFSGVLPKAASIATPNT
VIATPFRTQREGGAATPGGFQTPSSGALVPVKGAGGATGVVNTPAYVRDK
LSINPEESMGVTETPAHYKNYQKQLKSTLRDGLSTLPAPRNDYEIVVPEQ
EESERIETNSEPAVEDQADVDARLLAEQEARRKRELEKRSQVIQRSLPRP
TEVNTKILRPQSEKQNLTEQQQAEELIKHEMITMQLYDSVKDPVPGQSQH
KLEQLQSYFKANPYEDISQQELAKAKQMLTEEMEVVKERMAHGELPLDVY
AQVWQECLGQVLYLPSQHRYTRANLASKKDRLESAEKRLETNRRHMAKEA
KRCGKIEKKLKILTGGYQARAQVLIKQLQDTYGQIEQNSVSLSTFRFLGE
QEAIAVPRRLESLQEDVRRQMDREKELQQKYASLVEERDSLYSQIEHITG
VRPTAQQLLPDQEAASFLDH
BO17491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc5-PB | 814 | CG6905-PB | 1..814 | 1..814 | 4166 | 100 | Plus |
| Cdc5-PA | 814 | CG6905-PA | 1..814 | 1..814 | 4166 | 100 | Plus |
| Myb-PE | 657 | CG9045-PE | 137..221 | 9..92 | 164 | 37.6 | Plus |
| Myb-PD | 657 | CG9045-PD | 137..221 | 9..92 | 164 | 37.6 | Plus |
| Myb-PB | 657 | CG9045-PB | 137..221 | 9..92 | 164 | 37.6 | Plus |
