Clone Sequence Records
BO17492.3prime Sequence
638 bp (626 high quality bases) assembled on 2006-10-13
> BO17492.3prime
ATGGTCTAGAAAGCTTGCGATGAGGTCCCAGTATTTGGTCACGAATTGGT
TTTTAGGCAAAGCCAAATTGGTAGGACGTTCGTAGTTCAGAGCAAATTGT
TTGGCCTTCGACTGTAATTCGTCGTCGAAAATATTGCATTCCTTTCTGTC
CAAGAGGGGTGCTAAGTCGAATTCCATTACGGGCAGCGATGAGTTAATAA
ACCGTGCCGCATTGGCCACCTCTGGTACAACGTGTTTCTGCAGCAACGTA
ATTTCCCACAGCGAACTGTTTATGGCCTCCGATTTGACGGGATCCGTTTC
TGTTTGATTGTAAGGATCGCTGACCTCATCGACTGCATGGCTGGCGCGAA
TCAATTTCTGCAATCCAGTATGTCTCAATAGCAGATTGCAAACGAATCGA
ATCATAATAACAGCATCTTCGGTCGGCGATTGAAGGGCCAGGCGAGCGAG
ACGCTTAACGAATGCCGCCACCAGATTCTCGGGCAAATGGGTGGAGGTCA
GAAAGATATCGGCCAAGTAAAACAGGCGTGCCTTGTACTTGTTGTGGAAC
ATCCGTGGATAGAACATATTGTACAGCTTCTCATACACATCCGGATAGGT
GATATTCTGCTTTTGCATAAGCGTAAAGATTCCCTGAA
BO17492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 1494 | CG2875-RA | 872..1491 | 638..19 | 3100 | 100 | Minus |
CG2875-PB | 1491 | CG2875-RB | 869..1488 | 638..19 | 3100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RC | 1975 | CG2875-RC | 986..1605 | 638..19 | 3100 | 100 | Minus |
CG2875-RB | 1710 | CG2875-RB | 986..1605 | 638..19 | 3100 | 100 | Minus |
CG2875-RA | 1713 | CG2875-RA | 989..1608 | 638..19 | 3100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572003..3572508 | 133..638 | 2530 | 100 | Plus |
X | 23542271 | X | 3571826..3571939 | 19..132 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:39:24 has no hits.
BO17492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:28 Download gff for
BO17492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-PB | 871..1491 | 18..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:15 Download gff for
BO17492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 989..1614 | 11..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:21 Download gff for
BO17492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 989..1614 | 11..638 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:21 Download gff for
BO17492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3571820..3571939 | 11..132 | 96 | <- | Plus |
X | 3572003..3572508 | 133..638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:15 Download gff for
BO17492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3465853..3465972 | 11..132 | 96 | <- | Plus |
arm_X | 3466036..3466541 | 133..638 | 100 | | Plus |
BO17492.5prime Sequence
743 bp (580 high quality bases) assembled on 2006-10-13
> BO17492.5prime
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCA
BO17492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 1494 | CG2875-RA | 1..727 | 17..743 | 3635 | 100 | Plus |
CG2875-PB | 1491 | CG2875-RB | 1..724 | 17..743 | 3565 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1713 | CG2875-RA | 118..844 | 17..743 | 3635 | 100 | Plus |
CG2875-RC | 1975 | CG2875-RC | 118..841 | 17..743 | 3580 | 99.6 | Plus |
CG2875-RB | 1710 | CG2875-RB | 118..841 | 17..743 | 3580 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572715..3573304 | 743..154 | 2950 | 100 | Minus |
X | 23542271 | X | 3573368..3573505 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:32:27 has no hits.
BO17492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:29 Download gff for
BO17492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:22:48 Download gff for
BO17492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..843 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:38 Download gff for
BO17492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..843 | 17..742 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:38 Download gff for
BO17492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3572716..3573303 | 155..742 | 100 | <- | Minus |
X | 3573368..3573505 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:22:48 Download gff for
BO17492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3466749..3467336 | 155..742 | 100 | <- | Minus |
arm_X | 3467401..3467538 | 17..154 | 100 | | Minus |
BO17492.complete Sequence
1525 bp assembled on 2008-08-14
GenBank Submission: FJ634149
> BO17492.complete
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTT
TACGCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGC
TGTACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGC
CTGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAA
TCTGGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGC
CGACCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTG
AGACATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGA
GGTCAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGG
CCATAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTA
CCAGAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAAT
GGAATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCG
ACGACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGT
CCTACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGA
CCTCATCGCAAGCTTTCTAGACCAT
BO17492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1494 | CG2875-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
CG2875-RC | 1491 | CG2875-PC | 1..1488 | 17..1507 | 7375 | 99.8 | Plus |
CG2875-RB | 1491 | CG2875-PB | 1..1488 | 17..1507 | 7375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-RA | 1713 | CG2875-RA | 118..1608 | 17..1507 | 7455 | 100 | Plus |
CG2875-RC | 1975 | CG2875-RC | 118..1605 | 17..1507 | 7375 | 99.8 | Plus |
CG2875-RB | 1710 | CG2875-RB | 118..1605 | 17..1507 | 7375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3572595..3573304 | 863..154 | 3550 | 100 | Minus |
X | 23542271 | X | 3572003..3572533 | 1393..863 | 2655 | 100 | Minus |
X | 23542271 | X | 3573368..3573505 | 154..17 | 690 | 100 | Minus |
X | 23542271 | X | 3571826..3571939 | 1507..1394 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:43:29 has no hits.
BO17492.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:31 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 116..1612 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:29 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..1608 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:33 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 116..1606 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:23 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2875-RA | 118..1608 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:23 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3571824..3571939 | 1394..1509 | 98 | <- | Minus |
X | 3572003..3572532 | 864..1393 | 100 | <- | Minus |
X | 3572595..3573303 | 155..863 | 100 | <- | Minus |
X | 3573368..3573505 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:29 Download gff for
BO17492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3465857..3465972 | 1394..1509 | 98 | <- | Minus |
arm_X | 3466036..3466565 | 864..1393 | 100 | <- | Minus |
arm_X | 3466628..3467336 | 155..863 | 100 | <- | Minus |
arm_X | 3467401..3467538 | 17..154 | 100 | | Minus |
BO17492.pep Sequence
Translation from 16 to 1525
> BO17492.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLIASF
LDH
BO17492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2875-PA | 497 | CG2875-PA | 1..497 | 1..497 | 2550 | 100 | Plus |
CG2875-PC | 496 | CG2875-PC | 1..496 | 1..497 | 2533 | 99.8 | Plus |
CG2875-PB | 496 | CG2875-PB | 1..496 | 1..497 | 2533 | 99.8 | Plus |