Clone BO17492 Report

Search the DGRC for BO17492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG2875-RA
Protein status:BO17492.pep: Imported from assembly
Sequenced Size:1525

Clone Sequence Records

BO17492.3prime Sequence

638 bp (626 high quality bases) assembled on 2006-10-13

> BO17492.3prime
ATGGTCTAGAAAGCTTGCGATGAGGTCCCAGTATTTGGTCACGAATTGGT
TTTTAGGCAAAGCCAAATTGGTAGGACGTTCGTAGTTCAGAGCAAATTGT
TTGGCCTTCGACTGTAATTCGTCGTCGAAAATATTGCATTCCTTTCTGTC
CAAGAGGGGTGCTAAGTCGAATTCCATTACGGGCAGCGATGAGTTAATAA
ACCGTGCCGCATTGGCCACCTCTGGTACAACGTGTTTCTGCAGCAACGTA
ATTTCCCACAGCGAACTGTTTATGGCCTCCGATTTGACGGGATCCGTTTC
TGTTTGATTGTAAGGATCGCTGACCTCATCGACTGCATGGCTGGCGCGAA
TCAATTTCTGCAATCCAGTATGTCTCAATAGCAGATTGCAAACGAATCGA
ATCATAATAACAGCATCTTCGGTCGGCGATTGAAGGGCCAGGCGAGCGAG
ACGCTTAACGAATGCCGCCACCAGATTCTCGGGCAAATGGGTGGAGGTCA
GAAAGATATCGGCCAAGTAAAACAGGCGTGCCTTGTACTTGTTGTGGAAC
ATCCGTGGATAGAACATATTGTACAGCTTCTCATACACATCCGGATAGGT
GATATTCTGCTTTTGCATAAGCGTAAAGATTCCCTGAA

BO17492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 1494 CG2875-RA 872..1491 638..19 3100 100 Minus
CG2875-PB 1491 CG2875-RB 869..1488 638..19 3100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RC 1975 CG2875-RC 986..1605 638..19 3100 100 Minus
CG2875-RB 1710 CG2875-RB 986..1605 638..19 3100 100 Minus
CG2875-RA 1713 CG2875-RA 989..1608 638..19 3100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572003..3572508 133..638 2530 100 Plus
X 23542271 X 3571826..3571939 19..132 570 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:39:24 has no hits.

BO17492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:28 Download gff for BO17492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-PB 871..1491 18..636 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:02:15 Download gff for BO17492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 989..1614 11..638 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:21 Download gff for BO17492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 989..1614 11..638 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:21 Download gff for BO17492.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3571820..3571939 11..132 96 <- Plus
X 3572003..3572508 133..638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:02:15 Download gff for BO17492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3465853..3465972 11..132 96 <- Plus
arm_X 3466036..3466541 133..638 100   Plus

BO17492.5prime Sequence

743 bp (580 high quality bases) assembled on 2006-10-13

> BO17492.5prime
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCA

BO17492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 1494 CG2875-RA 1..727 17..743 3635 100 Plus
CG2875-PB 1491 CG2875-RB 1..724 17..743 3565 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1713 CG2875-RA 118..844 17..743 3635 100 Plus
CG2875-RC 1975 CG2875-RC 118..841 17..743 3580 99.6 Plus
CG2875-RB 1710 CG2875-RB 118..841 17..743 3580 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572715..3573304 743..154 2950 100 Minus
X 23542271 X 3573368..3573505 154..17 690 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:32:27 has no hits.

BO17492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:29 Download gff for BO17492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:22:48 Download gff for BO17492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..843 17..742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:38 Download gff for BO17492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..843 17..742 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:38 Download gff for BO17492.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3572716..3573303 155..742 100 <- Minus
X 3573368..3573505 17..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:22:48 Download gff for BO17492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3466749..3467336 155..742 100 <- Minus
arm_X 3467401..3467538 17..154 100   Minus

BO17492.complete Sequence

1525 bp assembled on 2008-08-14

GenBank Submission: FJ634149

> BO17492.complete
GAAGTTATCAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACA
CCGGCAAGTCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTG
CTAAATGCCGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATT
GCTGAAGAATACGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACAC
TCGAGGTGATATTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACC
GAAAAGCAGGGTCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCT
TCTCATCGAGAATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAG
TGTGCATGCAGCTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAAC
AAGGGTTGGCCCACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAA
TAGCGATACAACGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCA
AAAATCTCGATGTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTG
CCCGATGAAGACTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATC
CATTGTAAACCTCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATT
ACCACGTGGAAAGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGC
AAAAGACTGAATAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGT
GGACGAGAAACTGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAA
TCAACCACCTGAACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCC
CTCCATCAGTTTGATGGCCCCATTGCCTTGCTGGCTCTTCAGGGAATCTT
TACGCTTATGCAAAAGCAGAATATCACCTATCCGGATGTGTATGAGAAGC
TGTACAATATGTTCTATCCACGGATGTTCCACAACAAGTACAAGGCACGC
CTGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAA
TCTGGTGGCGGCATTCGTTAAGCGTCTCGCTCGCCTGGCCCTTCAATCGC
CGACCGAAGATGCTGTTATTATGATTCGATTCGTTTGCAATCTGCTATTG
AGACATACTGGATTGCAGAAATTGATTCGCGCCAGCCATGCAGTCGATGA
GGTCAGCGATCCTTACAATCAAACAGAAACGGATCCCGTCAAATCGGAGG
CCATAAACAGTTCGCTGTGGGAAATTACGTTGCTGCAGAAACACGTTGTA
CCAGAGGTGGCCAATGCGGCACGGTTTATTAACTCATCGCTGCCCGTAAT
GGAATTCGACTTAGCACCCCTCTTGGACAGAAAGGAATGCAATATTTTCG
ACGACGAATTACAGTCGAAGGCCAAACAATTTGCTCTGAACTACGAACGT
CCTACCAATTTGGCTTTGCCTAAAAACCAATTCGTGACCAAATACTGGGA
CCTCATCGCAAGCTTTCTAGACCAT

BO17492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1494 CG2875-PA 1..1491 17..1507 7455 100 Plus
CG2875-RC 1491 CG2875-PC 1..1488 17..1507 7375 99.8 Plus
CG2875-RB 1491 CG2875-PB 1..1488 17..1507 7375 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-RA 1713 CG2875-RA 118..1608 17..1507 7455 100 Plus
CG2875-RC 1975 CG2875-RC 118..1605 17..1507 7375 99.8 Plus
CG2875-RB 1710 CG2875-RB 118..1605 17..1507 7375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3572595..3573304 863..154 3550 100 Minus
X 23542271 X 3572003..3572533 1393..863 2655 100 Minus
X 23542271 X 3573368..3573505 154..17 690 100 Minus
X 23542271 X 3571826..3571939 1507..1394 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:43:29 has no hits.

BO17492.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:31 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 116..1612 17..1515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:29 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..1608 17..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:33 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 116..1606 17..1509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:23 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
CG2875-RA 118..1608 17..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:23 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
X 3571824..3571939 1394..1509 98 <- Minus
X 3572003..3572532 864..1393 100 <- Minus
X 3572595..3573303 155..863 100 <- Minus
X 3573368..3573505 17..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:29 Download gff for BO17492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3465857..3465972 1394..1509 98 <- Minus
arm_X 3466036..3466565 864..1393 100 <- Minus
arm_X 3466628..3467336 155..863 100 <- Minus
arm_X 3467401..3467538 17..154 100   Minus

BO17492.pep Sequence

Translation from 16 to 1525

> BO17492.pep
MKPLTVKVNDDTGKSLAKKKLQSKANSLLNAEQVDIKTLKGFVQLLKNTP
DNMPAGEVMNTLEVIFKNLLKRKAIDGTEKQGLKIKKLYEETWLLLIENL
LVDSQCSVAVKVCMQLIKVEAKHPIAPNKGWPTYWIRGMLETLINSDTTP
TTALANYGKYCKNLDVLEITLTQLKSLVPDEDFKDSPIKAMNFLSIVNLL
DMGKSVLSTADYHVESAKKQTFNYELNRKRLNNLWATIMAKGNEVDEKLH
RQILVVLLERVINHLNDPIQLTDFLMDSLHQFDGPIALLALQGIFTLMQK
QNITYPDVYEKLYNMFYPRMFHNKYKARLFYLADIFLTSTHLPENLVAAF
VKRLARLALQSPTEDAVIMIRFVCNLLLRHTGLQKLIRASHAVDEVSDPY
NQTETDPVKSEAINSSLWEITLLQKHVVPEVANAARFINSSLPVMEFDLA
PLLDRKECNIFDDELQSKAKQFALNYERPTNLALPKNQFVTKYWDLIASF
LDH

BO17492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2875-PA 497 CG2875-PA 1..497 1..497 2550 100 Plus
CG2875-PC 496 CG2875-PC 1..496 1..497 2533 99.8 Plus
CG2875-PB 496 CG2875-PB 1..496 1..497 2533 99.8 Plus