Clone BO17501 Report

Search the DGRC for BO17501

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG13856-RA
Protein status:BO17501.pep: validated full length
Sequenced Size:601

Clone Sequence Records

BO17501.3prime Sequence

599 bp (599 high quality bases) assembled on 2006-10-13

> BO17501.3prime
ATGGTCTAGAAAGCTTGCATAAATAATGTTTTTGTTATAATAAAAGTTGG
ACTTCAGGTTAAGGGCCGTCAGACCGGACTTTTTATCAGCATGGGCAACC
TGCAGTCGATGTGGGCGCCCATTGAAGTAGTAATCCTTGAGGTGTTGCAC
TCGAAGTACTTTGCTCGGATTCCGATGATCCAGATTGGGGCTAGATGTCG
TCGTCGTCGGTGGGCGAACCGTTGTGGTCTTTCTCGTTGTGCTCTCCGAC
TCGTGAAGGATGGGATTGATTTTCATCGGCTGATAATCCAAGCCGATGCC
AGGTATGTGGCGGAAGGGCAGTGGGGGTACGGGTATGTAATATATTTTCG
AATCCTTTTTCGTTTTTTTCGTCTTACTGCCGTTCTTGTTGTACTTGCGC
AGATTCAGCGGCTTCGATGTGACCACGTAGTCCATATACAAGTTGTCCAG
CGAGGGTGACTGCACCACAATCCGGTTGGCCAATCTCGTGGGAGGCGCTT
CTGCCCGTGGACCATAGGAATAGGGTCGAGATGCCACCAAATTGGCCAAG
ATGATTAGCGATGCCAGTGGAAGCAACGGCGACATGTCGACTGATAACT

BO17501.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 570 CG13856-RA 1..567 585..19 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..897 585..19 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405013 585..19 2835 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:39:51 has no hits.

BO17501.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:32 Download gff for BO17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:59 Download gff for BO17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 19..585 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:11 Download gff for BO17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 19..585 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:11 Download gff for BO17501.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22404442..22405013 19..594 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:59 Download gff for BO17501.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230164..18230735 19..594 99   Minus

BO17501.5prime Sequence

599 bp (599 high quality bases) assembled on 2006-10-13

> BO17501.5prime
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATGCAAGCTTTCTAGACC

BO17501.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 570 CG13856-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..897 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405013 17..583 2835 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:17 has no hits.

BO17501.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:32 Download gff for BO17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:36 Download gff for BO17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:00 Download gff for BO17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:00 Download gff for BO17501.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22404442..22405013 8..583 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:36 Download gff for BO17501.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230164..18230735 8..583 99   Plus

BO17501.complete Sequence

601 bp assembled on 2006-10-11

GenBank Submission: FJ634150

> BO17501.complete
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATGCAAGCTTTCTAGACCA
T

BO17501.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 570 CG13856-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..897 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405013 17..583 2835 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:11:20 has no hits.

BO17501.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:16 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:32 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..583 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:31 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:17 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..583 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:46 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..897 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:46 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22404447..22405013 17..585 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:31 Download gff for BO17501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230169..18230735 17..585 99   Plus

BO17501.pep Sequence

Translation from 16 to 601

> BO17501.pep
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIYASFLDH

BO17501.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 189 CG13856-PA 1..189 1..189 992 100 Plus