Clone Sequence Records
BO17501.3prime Sequence
599 bp (599 high quality bases) assembled on 2006-10-13
> BO17501.3prime
ATGGTCTAGAAAGCTTGCATAAATAATGTTTTTGTTATAATAAAAGTTGG
ACTTCAGGTTAAGGGCCGTCAGACCGGACTTTTTATCAGCATGGGCAACC
TGCAGTCGATGTGGGCGCCCATTGAAGTAGTAATCCTTGAGGTGTTGCAC
TCGAAGTACTTTGCTCGGATTCCGATGATCCAGATTGGGGCTAGATGTCG
TCGTCGTCGGTGGGCGAACCGTTGTGGTCTTTCTCGTTGTGCTCTCCGAC
TCGTGAAGGATGGGATTGATTTTCATCGGCTGATAATCCAAGCCGATGCC
AGGTATGTGGCGGAAGGGCAGTGGGGGTACGGGTATGTAATATATTTTCG
AATCCTTTTTCGTTTTTTTCGTCTTACTGCCGTTCTTGTTGTACTTGCGC
AGATTCAGCGGCTTCGATGTGACCACGTAGTCCATATACAAGTTGTCCAG
CGAGGGTGACTGCACCACAATCCGGTTGGCCAATCTCGTGGGAGGCGCTT
CTGCCCGTGGACCATAGGAATAGGGTCGAGATGCCACCAAATTGGCCAAG
ATGATTAGCGATGCCAGTGGAAGCAACGGCGACATGTCGACTGATAACT
BO17501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 570 | CG13856-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..897 | 585..19 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405013 | 585..19 | 2835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:39:51 has no hits.
BO17501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:32 Download gff for
BO17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:59 Download gff for
BO17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 19..585 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:11 Download gff for
BO17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 19..585 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:11 Download gff for
BO17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404442..22405013 | 19..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:59 Download gff for
BO17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230164..18230735 | 19..594 | 99 | | Minus |
BO17501.5prime Sequence
599 bp (599 high quality bases) assembled on 2006-10-13
> BO17501.5prime
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATGCAAGCTTTCTAGACC
BO17501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 570 | CG13856-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..897 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405013 | 17..583 | 2835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:17 has no hits.
BO17501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:32 Download gff for
BO17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:36 Download gff for
BO17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:00 Download gff for
BO17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:00 Download gff for
BO17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404442..22405013 | 8..583 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:36 Download gff for
BO17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230164..18230735 | 8..583 | 99 | | Plus |
BO17501.complete Sequence
601 bp assembled on 2006-10-11
GenBank Submission: FJ634150
> BO17501.complete
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATGCAAGCTTTCTAGACCA
T
BO17501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 570 | CG13856-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..897 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405013 | 17..583 | 2835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:11:20 has no hits.
BO17501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:16 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:32 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:31 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:17 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:46 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..897 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:46 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404447..22405013 | 17..585 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:31 Download gff for
BO17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230169..18230735 | 17..585 | 99 | | Plus |
BO17501.pep Sequence
Translation from 16 to 601
> BO17501.pep
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIYASFLDH
BO17501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 189 | CG13856-PA | 1..189 | 1..189 | 992 | 100 | Plus |