Clone BO17505 Report

Search the DGRC for BO17505

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG14362-RA
Protein status:BO17505.pep: validated full length
Sequenced Size:652

Clone Sequence Records

BO17505.3prime Sequence

650 bp (650 high quality bases) assembled on 2006-10-13

> BO17505.3prime
ATGGTCTAGAAAGCTTGCCAAATCATCTGTGGTTCGACCATGGTATTCGG
GTATCCAGGTGACCATCATTTCGGTCATGTCGAAGACTGCGAATGCTTTG
CAGAAGTCTTGGAACATTATTTGGTTCGAGTCCGTATGATCCATTTCCTT
CATTATGGTATTCACAATGCGCATTATCTGCACGTGATCCAATAGATTTG
AGAACAGCTTGTGGACAACTACAACCAAGTCATACTTTGTAATACGACCG
TCCTTGTTGTTATCGTACATGTTGAAAATTAACCTTAATTTCTTGTCCAT
CATCACATTTTTTAGCTCATTGGAGGTTTTAAGAGAATGGGCCTGAAAGG
TGCTCAGAAACAGAGCGAAATCCACAAAGGTAATTGTCACTTTATTCCCG
AACATGGAGTTCAATATGGTGGGCAGCAAGGGGTTTAGTTGCAGTAGTCC
TGAATAGAAATTGTACTTGTGCAGATGACTTGGGGGATCTTTGCCTCCTC
CTGAAAACTGGTGGAATCGAATATACAGATACTTGATCTGACTACGACTT
AGTGCTGTATTCATCCTGAGGGTGTTCATAATCTCTTGTGGAACTGAGGG
ATACGAGGAGAACTTCCTCAAACACAGACATCCCATGTCGACTGATAACT

BO17505.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 621 CG14362-RA 1..618 636..19 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..623 636..19 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 282..551 1350 100 Plus
3R 32079331 3R 13854664..13854926 19..281 1315 100 Plus
3R 32079331 3R 13855365..13855449 552..636 425 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:20:45 has no hits.

BO17505.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:36 Download gff for BO17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-PA 1..621 15..636 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:06 Download gff for BO17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..626 15..638 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:38 Download gff for BO17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..626 15..638 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:38 Download gff for BO17505.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13854661..13854926 15..281 99 <- Plus
3R 13855039..13855308 282..551 100 <- Plus
3R 13855365..13855453 552..644 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:06 Download gff for BO17505.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680383..9680648 15..281 99 <- Plus
arm_3R 9680761..9681030 282..551 100 <- Plus
arm_3R 9681087..9681175 552..644 95   Plus

BO17505.5prime Sequence

650 bp (650 high quality bases) assembled on 2006-10-13

> BO17505.5prime
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGGCAAGCTTTCTAGACC

BO17505.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 621 CG14362-RA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..623 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 371..102 1350 100 Minus
3R 32079331 3R 13854664..13854926 634..372 1315 100 Minus
3R 32079331 3R 13855365..13855449 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:48:55 has no hits.

BO17505.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:38 Download gff for BO17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-PA 1..621 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:04 Download gff for BO17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..626 15..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:47 Download gff for BO17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..626 15..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:47 Download gff for BO17505.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13854661..13854926 372..638 99 <- Minus
3R 13855039..13855308 102..371 100 <- Minus
3R 13855365..13855453 9..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:04 Download gff for BO17505.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680383..9680648 372..638 99 <- Minus
arm_3R 9680761..9681030 102..371 100 <- Minus
arm_3R 9681087..9681175 9..101 95   Minus

BO17505.complete Sequence

652 bp assembled on 2006-10-11

GenBank Submission: FJ634151

> BO17505.complete
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGGCAAGCTTTCTAGACC
AT

BO17505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 621 CG14362-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..623 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 371..102 1350 100 Minus
3R 32079331 3R 13854664..13854926 634..372 1315 100 Minus
3R 32079331 3R 13855365..13855449 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:19 has no hits.

BO17505.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:27 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..621 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:23 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..621 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:50 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 6..623 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:27 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..621 17..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:39 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 6..623 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:39 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13855039..13855308 102..371 100 <- Minus
3R 13855365..13855449 17..101 100   Minus
3R 13854662..13854926 372..636 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:50 Download gff for BO17505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680384..9680648 372..636 99 <- Minus
arm_3R 9680761..9681030 102..371 100 <- Minus
arm_3R 9681087..9681171 17..101 100   Minus

BO17505.pep Sequence

Translation from 16 to 652

> BO17505.pep
MGCLCLRKFSSYPSVPQEIMNTLRMNTALSRSQIKYLYIRFHQFSGGGKD
PPSHLHKYNFYSGLLQLNPLLPTILNSMFGNKVTITFVDFALFLSTFQAH
SLKTSNELKNVMMDKKLRLIFNMYDNNKDGRITKYDLVVVVHKLFSNLLD
HVQIMRIVNTIMKEMDHTDSNQIMFQDFCKAFAVFDMTEMMVTWIPEYHG
RTTDDLASFLDH

BO17505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 206 CG14362-PA 1..206 1..206 1086 100 Plus
elm-PB 189 CG2185-PB 17..183 23..191 147 26.9 Plus
elm-PA 189 CG2185-PA 17..183 23..191 147 26.9 Plus