Clone Sequence Records
BO17505.3prime Sequence
650 bp (650 high quality bases) assembled on 2006-10-13
> BO17505.3prime
ATGGTCTAGAAAGCTTGCCAAATCATCTGTGGTTCGACCATGGTATTCGG
GTATCCAGGTGACCATCATTTCGGTCATGTCGAAGACTGCGAATGCTTTG
CAGAAGTCTTGGAACATTATTTGGTTCGAGTCCGTATGATCCATTTCCTT
CATTATGGTATTCACAATGCGCATTATCTGCACGTGATCCAATAGATTTG
AGAACAGCTTGTGGACAACTACAACCAAGTCATACTTTGTAATACGACCG
TCCTTGTTGTTATCGTACATGTTGAAAATTAACCTTAATTTCTTGTCCAT
CATCACATTTTTTAGCTCATTGGAGGTTTTAAGAGAATGGGCCTGAAAGG
TGCTCAGAAACAGAGCGAAATCCACAAAGGTAATTGTCACTTTATTCCCG
AACATGGAGTTCAATATGGTGGGCAGCAAGGGGTTTAGTTGCAGTAGTCC
TGAATAGAAATTGTACTTGTGCAGATGACTTGGGGGATCTTTGCCTCCTC
CTGAAAACTGGTGGAATCGAATATACAGATACTTGATCTGACTACGACTT
AGTGCTGTATTCATCCTGAGGGTGTTCATAATCTCTTGTGGAACTGAGGG
ATACGAGGAGAACTTCCTCAAACACAGACATCCCATGTCGACTGATAACT
BO17505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 621 | CG14362-RA | 1..618 | 636..19 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..623 | 636..19 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 282..551 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 13854664..13854926 | 19..281 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 13855365..13855449 | 552..636 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:20:45 has no hits.
BO17505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:36 Download gff for
BO17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-PA | 1..621 | 15..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:06 Download gff for
BO17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..626 | 15..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:38 Download gff for
BO17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..626 | 15..638 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:38 Download gff for
BO17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13854661..13854926 | 15..281 | 99 | <- | Plus |
3R | 13855039..13855308 | 282..551 | 100 | <- | Plus |
3R | 13855365..13855453 | 552..644 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:06 Download gff for
BO17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680383..9680648 | 15..281 | 99 | <- | Plus |
arm_3R | 9680761..9681030 | 282..551 | 100 | <- | Plus |
arm_3R | 9681087..9681175 | 552..644 | 95 | | Plus |
BO17505.5prime Sequence
650 bp (650 high quality bases) assembled on 2006-10-13
> BO17505.5prime
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGGCAAGCTTTCTAGACC
BO17505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 621 | CG14362-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..623 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 371..102 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 13854664..13854926 | 634..372 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 13855365..13855449 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:48:55 has no hits.
BO17505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:38 Download gff for
BO17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-PA | 1..621 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:04 Download gff for
BO17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..626 | 15..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:47 Download gff for
BO17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..626 | 15..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:47 Download gff for
BO17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13854661..13854926 | 372..638 | 99 | <- | Minus |
3R | 13855039..13855308 | 102..371 | 100 | <- | Minus |
3R | 13855365..13855453 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:04 Download gff for
BO17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680383..9680648 | 372..638 | 99 | <- | Minus |
arm_3R | 9680761..9681030 | 102..371 | 100 | <- | Minus |
arm_3R | 9681087..9681175 | 9..101 | 95 | | Minus |
BO17505.complete Sequence
652 bp assembled on 2006-10-11
GenBank Submission: FJ634151
> BO17505.complete
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGGCAAGCTTTCTAGACC
AT
BO17505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 621 | CG14362-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..623 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 371..102 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 13854664..13854926 | 634..372 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 13855365..13855449 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:19 has no hits.
BO17505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:27 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..621 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:23 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..621 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:50 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 6..623 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:27 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..621 | 17..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:39 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 6..623 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:39 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13855039..13855308 | 102..371 | 100 | <- | Minus |
3R | 13855365..13855449 | 17..101 | 100 | | Minus |
3R | 13854662..13854926 | 372..636 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:50 Download gff for
BO17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680384..9680648 | 372..636 | 99 | <- | Minus |
arm_3R | 9680761..9681030 | 102..371 | 100 | <- | Minus |
arm_3R | 9681087..9681171 | 17..101 | 100 | | Minus |
BO17505.pep Sequence
Translation from 16 to 652
> BO17505.pep
MGCLCLRKFSSYPSVPQEIMNTLRMNTALSRSQIKYLYIRFHQFSGGGKD
PPSHLHKYNFYSGLLQLNPLLPTILNSMFGNKVTITFVDFALFLSTFQAH
SLKTSNELKNVMMDKKLRLIFNMYDNNKDGRITKYDLVVVVHKLFSNLLD
HVQIMRIVNTIMKEMDHTDSNQIMFQDFCKAFAVFDMTEMMVTWIPEYHG
RTTDDLASFLDH
BO17505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 206 | CG14362-PA | 1..206 | 1..206 | 1086 | 100 | Plus |
elm-PB | 189 | CG2185-PB | 17..183 | 23..191 | 147 | 26.9 | Plus |
elm-PA | 189 | CG2185-PA | 17..183 | 23..191 | 147 | 26.9 | Plus |