Clone Sequence Records
BO17506.3prime Sequence
326 bp (326 high quality bases) assembled on 2006-10-13
> BO17506.3prime
ATGGTCTAGAAAGCTTGCGTTTTCTTCTGTCTTGACCTCATCGCAGCGGT
TCTTGTTCTTCAGCAGATAGGTGGCCAGGTAGCTGATCGGATCACTGGGG
CGATCCCGGGCCAAAGCCTGCAGTCCGTGCAGCAAAATGGGGGCCACCGT
CTGGTCGAGGTACTGGCGAACCGGCATGGAACTGGTGTCCGGACGCGGCT
TCTGGCAGGCGGCGAACGCATCGATTCCATCCACCGATTGCTGCGAGTTG
GAGTCGTTCTTGGCCACATCTCCGCCGCCATTGACTTCCCCCTCTCCAGG
GGAAACCGGCATGTCGACTGATAACT
BO17506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11591-PA | 297 | CG11591-RA | 1..294 | 312..19 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..338 | 312..19 | 1470 | 100 | Minus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..382 | 312..19 | 1470 | 100 | Minus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 165..58 | 195 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047156..4047449 | 19..312 | 1470 | 100 | Plus |
2L | 23513712 | 2L | 10733055..10733162 | 165..58 | 180 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:25 has no hits.
BO17506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:39 Download gff for
BO17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-PA | 1..297 | 18..312 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:38 Download gff for
BO17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..387 | 11..320 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:23 Download gff for
BO17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..387 | 11..320 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:23 Download gff for
BO17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047151..4047460 | 11..321 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:38 Download gff for
BO17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047151..4047460 | 11..321 | 97 | | Plus |
BO17506.5prime Sequence
326 bp (326 high quality bases) assembled on 2006-10-13
> BO17506.5prime
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACGCAAGCTTTCTAGACC
BO17506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11591-PA | 297 | CG11591-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..338 | 17..310 | 1470 | 100 | Plus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..382 | 17..310 | 1470 | 100 | Plus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 164..271 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047156..4047449 | 310..17 | 1470 | 100 | Minus |
2L | 23513712 | 2L | 10733055..10733162 | 164..271 | 180 | 77.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:56:14 has no hits.
BO17506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:40 Download gff for
BO17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-PA | 1..297 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:51 Download gff for
BO17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..387 | 9..318 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:49 Download gff for
BO17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..387 | 9..318 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:49 Download gff for
BO17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047151..4047460 | 8..318 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:51 Download gff for
BO17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047151..4047460 | 8..318 | 97 | | Minus |
BO17506.complete Sequence
328 bp assembled on 2006-10-11
GenBank Submission: FJ634152
> BO17506.complete
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACGCAAGCTTTCTAGACCAT
BO17506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 297 | CG11591-PB | 1..294 | 17..310 | 1470 | 100 | Plus |
Dpy-30L2-RA | 297 | CG11591-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Dpy-30L1-RA | 405 | CG6444-PA | 238..345 | 164..271 | 180 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..338 | 17..310 | 1470 | 100 | Plus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..382 | 17..310 | 1470 | 100 | Plus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 164..271 | 180 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047156..4047449 | 310..17 | 1470 | 100 | Minus |
2L | 23513712 | 2L | 10733055..10733162 | 164..271 | 180 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:09:01 has no hits.
BO17506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:28 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 1..297 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:17 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 84..387 | 9..318 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:28 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 89..382 | 17..312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:28 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 84..387 | 9..318 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:21 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 89..382 | 17..312 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:21 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047154..4047449 | 17..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:28 Download gff for
BO17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047154..4047449 | 17..312 | 99 | | Minus |
BO17506.pep Sequence
Translation from 16 to 328
> BO17506.pep
MPVSPGEGEVNGGGDVAKNDSNSQQSVDGIDAFAACQKPRPDTSSMPVRQ
YLDQTVAPILLHGLQALARDRPSDPISYLATYLLKNKNRCDEVKTEENAS
FLDH
BO17506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-PB | 98 | CG11591-PB | 1..98 | 1..98 | 512 | 100 | Plus |
Dpy-30L2-PA | 98 | CG11591-PA | 1..98 | 1..98 | 512 | 100 | Plus |
Dpy-30L1-PA | 134 | CG6444-PA | 64..122 | 34..92 | 226 | 67.8 | Plus |