Clone BO17506 Report

Search the DGRC for BO17506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptDpy-30L2-RA
Protein status:BO17506.pep: validated full length
Sequenced Size:328

Clone Sequence Records

BO17506.3prime Sequence

326 bp (326 high quality bases) assembled on 2006-10-13

> BO17506.3prime
ATGGTCTAGAAAGCTTGCGTTTTCTTCTGTCTTGACCTCATCGCAGCGGT
TCTTGTTCTTCAGCAGATAGGTGGCCAGGTAGCTGATCGGATCACTGGGG
CGATCCCGGGCCAAAGCCTGCAGTCCGTGCAGCAAAATGGGGGCCACCGT
CTGGTCGAGGTACTGGCGAACCGGCATGGAACTGGTGTCCGGACGCGGCT
TCTGGCAGGCGGCGAACGCATCGATTCCATCCACCGATTGCTGCGAGTTG
GAGTCGTTCTTGGCCACATCTCCGCCGCCATTGACTTCCCCCTCTCCAGG
GGAAACCGGCATGTCGACTGATAACT

BO17506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11591-PA 297 CG11591-RA 1..294 312..19 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpy-30L2-RB 506 CG11591-RB 45..338 312..19 1470 100 Minus
Dpy-30L2-RA 550 CG11591-RA 89..382 312..19 1470 100 Minus
Dpy-30L1-RA 655 CG6444-RA 403..510 165..58 195 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4047156..4047449 19..312 1470 100 Plus
2L 23513712 2L 10733055..10733162 165..58 180 77.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:24:25 has no hits.

BO17506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:39 Download gff for BO17506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11591-PA 1..297 18..312 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:38 Download gff for BO17506.3prime
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 84..387 11..320 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:23 Download gff for BO17506.3prime
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 84..387 11..320 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:23 Download gff for BO17506.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4047151..4047460 11..321 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:38 Download gff for BO17506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4047151..4047460 11..321 97   Plus

BO17506.5prime Sequence

326 bp (326 high quality bases) assembled on 2006-10-13

> BO17506.5prime
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACGCAAGCTTTCTAGACC

BO17506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11591-PA 297 CG11591-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpy-30L2-RB 506 CG11591-RB 45..338 17..310 1470 100 Plus
Dpy-30L2-RA 550 CG11591-RA 89..382 17..310 1470 100 Plus
Dpy-30L1-RA 655 CG6444-RA 403..510 164..271 195 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4047156..4047449 310..17 1470 100 Minus
2L 23513712 2L 10733055..10733162 164..271 180 77.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:56:14 has no hits.

BO17506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:40 Download gff for BO17506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11591-PA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:51 Download gff for BO17506.5prime
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 84..387 9..318 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:49 Download gff for BO17506.5prime
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 84..387 9..318 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:49 Download gff for BO17506.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4047151..4047460 8..318 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:51 Download gff for BO17506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4047151..4047460 8..318 97   Minus

BO17506.complete Sequence

328 bp assembled on 2006-10-11

GenBank Submission: FJ634152

> BO17506.complete
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACGCAAGCTTTCTAGACCAT

BO17506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpy-30L2-RB 297 CG11591-PB 1..294 17..310 1470 100 Plus
Dpy-30L2-RA 297 CG11591-PA 1..294 17..310 1470 100 Plus
Dpy-30L1-RA 405 CG6444-PA 238..345 164..271 180 77.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpy-30L2-RB 506 CG11591-RB 45..338 17..310 1470 100 Plus
Dpy-30L2-RA 550 CG11591-RA 89..382 17..310 1470 100 Plus
Dpy-30L1-RA 655 CG6444-RA 403..510 164..271 180 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4047156..4047449 310..17 1470 100 Minus
2L 23513712 2L 10733055..10733162 164..271 180 77.8 Plus
Blast to na_te.dros performed on 2014-11-26 16:09:01 has no hits.

BO17506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:28 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
CG11591-RA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:17 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
CG11591-RA 84..387 9..318 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:28 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 89..382 17..312 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:28 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
CG11591-RA 84..387 9..318 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:21 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
Dpy-30L2-RA 89..382 17..312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:21 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4047154..4047449 17..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:28 Download gff for BO17506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4047154..4047449 17..312 99   Minus

BO17506.pep Sequence

Translation from 16 to 328

> BO17506.pep
MPVSPGEGEVNGGGDVAKNDSNSQQSVDGIDAFAACQKPRPDTSSMPVRQ
YLDQTVAPILLHGLQALARDRPSDPISYLATYLLKNKNRCDEVKTEENAS
FLDH

BO17506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpy-30L2-PB 98 CG11591-PB 1..98 1..98 512 100 Plus
Dpy-30L2-PA 98 CG11591-PA 1..98 1..98 512 100 Plus
Dpy-30L1-PA 134 CG6444-PA 64..122 34..92 226 67.8 Plus