Clone BO17512 Report

Search the DGRC for BO17512

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:12
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17512.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO17512.3prime Sequence

457 bp (457 high quality bases) assembled on 2006-10-13

> BO17512.3prime
ATGGTCTAGAAAGCTTGCGGGCTCCATTCCACCAGATTCGGCATCGATCT
TGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGTGATCA
GCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTCTTTTC
CTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAAGCCCA
TCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGTACTTG
GCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCCCCATG
GATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCACCTTGG
CAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAAGTCGA
GCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCAGCAAA
CTCCATG

BO17512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 441 CG18662-RA 1..438 456..19 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 73..511 457..19 2195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981297 239..19 1105 100 Minus
2L 23513712 2L 8980853..8981023 406..236 840 99.4 Minus
2L 23513712 2L 8980731..8980783 457..405 265 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:54:10 has no hits.

BO17512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:46 Download gff for BO17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-PA 1..441 18..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:05 Download gff for BO17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 73..511 19..457 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:27 Download gff for BO17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 73..511 19..457 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:27 Download gff for BO17512.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8980731..8980783 405..457 100 -> Minus
2L 8980855..8981019 240..404 100 -> Minus
2L 8981077..8981297 19..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:05 Download gff for BO17512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8981077..8981297 19..239 100   Minus
arm_2L 8980731..8980783 405..457 100 -> Minus
arm_2L 8980855..8981019 240..404 100 -> Minus

BO17512.5prime Sequence

554 bp (554 high quality bases) assembled on 2006-10-13

> BO17512.5prime
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCGCAAGCTTTCTA
GACC

BO17512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 441 CG18662-RA 1..438 101..538 2190 100 Plus
CG7052-PE 4167 TepII-RE 3079..3107 45..17 145 100 Minus
CG7052-PC 4194 TepII-RC 3106..3134 45..17 145 100 Minus
CG7052-PB 4200 TepII-RB 3112..3140 45..17 145 100 Minus
CG7052-PD 4227 TepII-RD 3139..3167 45..17 145 100 Minus
CG7052-PA 4263 TepII-RA 3175..3203 45..17 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 18..511 44..538 2450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981297 318..538 1105 100 Plus
2L 23513712 2L 8980853..8981023 151..321 840 99.4 Plus
2L 23513712 2L 8980676..8980783 44..152 495 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:31:51 has no hits.

BO17512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:48 Download gff for BO17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-PA 1..441 101..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:27 Download gff for BO17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..511 33..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:22 Download gff for BO17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..511 33..538 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:22 Download gff for BO17512.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8980667..8980783 33..152 95 -> Plus
2L 8980855..8981019 153..317 100 -> Plus
2L 8981077..8981297 318..538 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:27 Download gff for BO17512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980667..8980783 33..152 95 -> Plus
arm_2L 8980855..8981019 153..317 100 -> Plus
arm_2L 8981077..8981297 318..538 100   Plus

BO17512.complete Sequence

556 bp assembled on 2006-10-11

GenBank Submission: FJ634153

> BO17512.complete
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCGCAAGCTTTCTA
GACCAT

BO17512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 441 CG18662-PA 1..438 101..538 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 18..511 44..538 2425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981297 318..538 1105 100 Plus
2L 23513712 2L 8980853..8981023 151..321 840 99.4 Plus
2L 23513712 2L 8980676..8980783 44..152 495 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 00:46:56 has no hits.

BO17512.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:29 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..441 101..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:18 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..490 48..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:49 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..511 33..540 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:29 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..490 48..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:23 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..511 33..540 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:23 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8980667..8980783 33..152 95 -> Plus
2L 8980855..8981019 153..317 100 -> Plus
2L 8981077..8981297 318..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:49 Download gff for BO17512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980667..8980783 33..152 95 -> Plus
arm_2L 8980855..8981019 153..317 100 -> Plus
arm_2L 8981077..8981297 318..540 99   Plus

BO17512.pep Sequence

Translation from 16 to 556

> BO17512.pep
MALWYFGISSTASTQIKRKKAKIFFFFDMEFAGKFLKPVWRPMMQAARLY
CEKPMRSLVAFPVAKVESGKSKYMMAHVYIHGEMGSAKQVIRSLSKAKYH
LDVYDELKKEAESMGLCTQGLGGGYLVHDKEKKYIKLYGRSQALGKADHE
AAREILQPIYTDHKIDAESGGMEPASFLDH

BO17512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 146 CG18662-PA 1..146 29..174 765 100 Plus
janB-PA 140 CG7931-PA 27..136 57..165 198 36.9 Plus
janA-PB 135 CG7933-PB 7..134 43..171 191 32.3 Plus
janA-PA 119 CG7933-PA 5..118 57..171 188 34.5 Plus
janA-PC 119 CG7933-PC 5..118 57..171 188 34.5 Plus