Clone Sequence Records
BO17512.3prime Sequence
457 bp (457 high quality bases) assembled on 2006-10-13
> BO17512.3prime
ATGGTCTAGAAAGCTTGCGGGCTCCATTCCACCAGATTCGGCATCGATCT
TGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGTGATCA
GCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTCTTTTC
CTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAAGCCCA
TCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGTACTTG
GCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCCCCATG
GATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCACCTTGG
CAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAAGTCGA
GCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCAGCAAA
CTCCATG
BO17512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 441 | CG18662-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 73..511 | 457..19 | 2195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981297 | 239..19 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 8980853..8981023 | 406..236 | 840 | 99.4 | Minus |
2L | 23513712 | 2L | 8980731..8980783 | 457..405 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:54:10 has no hits.
BO17512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:46 Download gff for
BO17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-PA | 1..441 | 18..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:05 Download gff for
BO17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 73..511 | 19..457 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:27 Download gff for
BO17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 73..511 | 19..457 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:27 Download gff for
BO17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980731..8980783 | 405..457 | 100 | -> | Minus |
2L | 8980855..8981019 | 240..404 | 100 | -> | Minus |
2L | 8981077..8981297 | 19..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:05 Download gff for
BO17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8981077..8981297 | 19..239 | 100 | | Minus |
arm_2L | 8980731..8980783 | 405..457 | 100 | -> | Minus |
arm_2L | 8980855..8981019 | 240..404 | 100 | -> | Minus |
BO17512.5prime Sequence
554 bp (554 high quality bases) assembled on 2006-10-13
> BO17512.5prime
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCGCAAGCTTTCTA
GACC
BO17512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 441 | CG18662-RA | 1..438 | 101..538 | 2190 | 100 | Plus |
CG7052-PE | 4167 | TepII-RE | 3079..3107 | 45..17 | 145 | 100 | Minus |
CG7052-PC | 4194 | TepII-RC | 3106..3134 | 45..17 | 145 | 100 | Minus |
CG7052-PB | 4200 | TepII-RB | 3112..3140 | 45..17 | 145 | 100 | Minus |
CG7052-PD | 4227 | TepII-RD | 3139..3167 | 45..17 | 145 | 100 | Minus |
CG7052-PA | 4263 | TepII-RA | 3175..3203 | 45..17 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 18..511 | 44..538 | 2450 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981297 | 318..538 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 8980853..8981023 | 151..321 | 840 | 99.4 | Plus |
2L | 23513712 | 2L | 8980676..8980783 | 44..152 | 495 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:31:51 has no hits.
BO17512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:48 Download gff for
BO17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-PA | 1..441 | 101..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:27 Download gff for
BO17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..511 | 33..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:22 Download gff for
BO17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..511 | 33..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:22 Download gff for
BO17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
2L | 8981077..8981297 | 318..538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:27 Download gff for
BO17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
arm_2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
arm_2L | 8981077..8981297 | 318..538 | 100 | | Plus |
BO17512.complete Sequence
556 bp assembled on 2006-10-11
GenBank Submission: FJ634153
> BO17512.complete
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCGCAAGCTTTCTA
GACCAT
BO17512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 441 | CG18662-PA | 1..438 | 101..538 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 18..511 | 44..538 | 2425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981297 | 318..538 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 8980853..8981023 | 151..321 | 840 | 99.4 | Plus |
2L | 23513712 | 2L | 8980676..8980783 | 44..152 | 495 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:46:56 has no hits.
BO17512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:29 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..441 | 101..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:18 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..490 | 48..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:49 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..511 | 33..540 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:29 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..490 | 48..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:23 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..511 | 33..540 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:23 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
2L | 8981077..8981297 | 318..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:49 Download gff for
BO17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
arm_2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
arm_2L | 8981077..8981297 | 318..540 | 99 | | Plus |
BO17512.pep Sequence
Translation from 16 to 556
> BO17512.pep
MALWYFGISSTASTQIKRKKAKIFFFFDMEFAGKFLKPVWRPMMQAARLY
CEKPMRSLVAFPVAKVESGKSKYMMAHVYIHGEMGSAKQVIRSLSKAKYH
LDVYDELKKEAESMGLCTQGLGGGYLVHDKEKKYIKLYGRSQALGKADHE
AAREILQPIYTDHKIDAESGGMEPASFLDH
BO17512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 146 | CG18662-PA | 1..146 | 29..174 | 765 | 100 | Plus |
janB-PA | 140 | CG7931-PA | 27..136 | 57..165 | 198 | 36.9 | Plus |
janA-PB | 135 | CG7933-PB | 7..134 | 43..171 | 191 | 32.3 | Plus |
janA-PA | 119 | CG7933-PA | 5..118 | 57..171 | 188 | 34.5 | Plus |
janA-PC | 119 | CG7933-PC | 5..118 | 57..171 | 188 | 34.5 | Plus |