Clone Sequence Records
BO17513.3prime Sequence
563 bp (492 high quality bases) assembled on 2006-10-13
> BO17513.3prime
ATGGTCTAGAAAGCTTGCTGCGAACTCAAACCCATGGTCAACAATGTGTT
CTGCATCCCAAAACGTTGTCGGTCGCTTGGGAACATTGGACGCCATCTCT
CGCAAAATGTTTCCAGGAGGAGCATATCTCACCACTAGGTATCGCGTTTC
CTGTATTCTGCCTAGTCCAACGCCAAGTCTGGTGGAGGCGTTCCATATCA
TGGCCGTAAACCTGTAATACTTTGTGTTCTCGGCGAAGCCTCGGTAATGA
AACCAAATTCGAACACATTCCCTAGGCAAGGCCTCCCGGAAAACGCAGAC
GACTTGAAGGTGCTTTGCTGATATTGGGTCCGTTGCATACAGGTATTCCA
AGTAGTTCTCTGTATATACACCTTCATTCCTGACTATTTCATCTGCGTAT
TCTGAGCACTCTGTACAGAGTTCTTCGTCCAGAACCATGGGCTGATTACC
GTACTTGGCCCTCCTTCGATTGTGAGCCTCCAGGATTAAGGAGCGAATAC
CTATGCCGATTGTCTGGTTGCACTCGATGGCGATTAAAAACAAAATAATT
TTTATGCTCTTGT
BO17513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 546 | CG32313-RA | 3..543 | 559..19 | 2680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 52..592 | 559..19 | 2690 | 99.8 | Minus |
CG32313-RB | 735 | CG32313-RB | 52..595 | 559..19 | 2650 | 99.3 | Minus |
CG32313-RC | 752 | CG32313-RC | 52..612 | 559..19 | 2470 | 96.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 155..390 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 1544968..1545103 | 19..154 | 680 | 100 | Plus |
3L | 28110227 | 3L | 1545473..1545607 | 390..524 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 1545656..1545692 | 523..559 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:32:12 has no hits.
BO17513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:48 Download gff for
BO17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-PA | 1..546 | 15..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:32 Download gff for
BO17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 46..599 | 10..563 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:47 Download gff for
BO17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 46..599 | 10..563 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:47 Download gff for
BO17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1545170..1545405 | 155..390 | 100 | <- | Plus |
3L | 1545474..1545605 | 391..522 | 99 | <- | Plus |
3L | 1545656..1545695 | 523..563 | 95 | | Plus |
3L | 1544960..1545103 | 10..154 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:32 Download gff for
BO17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1545474..1545605 | 391..522 | 99 | <- | Plus |
arm_3L | 1545656..1545695 | 523..563 | 95 | | Plus |
arm_3L | 1544960..1545103 | 10..154 | 97 | <- | Plus |
arm_3L | 1545170..1545405 | 155..390 | 100 | <- | Plus |
BO17513.5prime Sequence
524 bp (506 high quality bases) assembled on 2006-10-13
> BO17513.5prime
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATG
BO17513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 546 | CG32313-RA | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 50..557 | 17..524 | 2540 | 100 | Plus |
CG32313-RB | 735 | CG32313-RB | 50..560 | 17..524 | 2500 | 99.4 | Plus |
CG32313-RC | 752 | CG32313-RC | 50..577 | 17..524 | 2320 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 423..188 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 1545473..1545607 | 188..54 | 675 | 100 | Minus |
3L | 28110227 | 3L | 1545003..1545103 | 524..424 | 505 | 100 | Minus |
3L | 28110227 | 3L | 1545656..1545694 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:36:02 has no hits.
BO17513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:50 Download gff for
BO17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-PA | 1..508 | 17..524 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:56 Download gff for
BO17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..557 | 6..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:15 Download gff for
BO17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..557 | 6..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:15 Download gff for
BO17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1545003..1545103 | 424..524 | 100 | <- | Minus |
3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:56 Download gff for
BO17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1545003..1545103 | 424..524 | 100 | <- | Minus |
arm_3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
arm_3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
BO17513.complete Sequence
577 bp assembled on 2006-10-11
GenBank Submission: FJ634154
> BO17513.complete
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCAGCAAGCTTTCTAGACCAT
BO17513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 546 | CG32313-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
CG32313-RB | 549 | CG32313-PB | 1..546 | 17..559 | 2650 | 99.5 | Plus |
CG32313-RC | 198 | CG32313-PC | 1..174 | 17..187 | 790 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 50..592 | 17..559 | 2715 | 100 | Plus |
CG32313-RB | 735 | CG32313-RB | 50..595 | 17..559 | 2650 | 99.5 | Plus |
CG32313-RC | 752 | CG32313-RC | 50..612 | 17..559 | 2445 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 423..188 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 1544968..1545103 | 559..424 | 680 | 100 | Minus |
3L | 28110227 | 3L | 1545473..1545607 | 188..54 | 675 | 100 | Minus |
3L | 28110227 | 3L | 1545656..1545694 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:24 has no hits.
BO17513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:30 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 1..546 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:20 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..599 | 6..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:28 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 50..592 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:31 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..599 | 6..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:45 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 50..592 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:45 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1544966..1545103 | 424..561 | 98 | <- | Minus |
3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
3L | 1545656..1545694 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:28 Download gff for
BO17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
arm_3L | 1545656..1545694 | 17..55 | 100 | | Minus |
arm_3L | 1544966..1545103 | 424..561 | 98 | <- | Minus |
arm_3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
BO17513.pep Sequence
Translation from 16 to 577
> BO17513.pep
MSIKIILFLIAIECNQTIGIGLRSLILEAHNRRRAKYGNQPMVLDEELCT
ECSEYADEIVRNEGVYTENYLEYLYATDPISAKHLQVVCVFREALPRECV
RIWFHYRGFAENTKYYRFTAMIWNASTRLGVGLGRIQETRYLVVRYAPPG
NILREMASNVPKRPTTFWDAEHIVDHGFEFAASFLDH
BO17513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 181 | CG32313-PA | 1..181 | 1..181 | 964 | 100 | Plus |
CG32313-PB | 182 | CG32313-PB | 1..182 | 1..181 | 952 | 99.5 | Plus |
CG32313-PC | 65 | CG32313-PC | 1..58 | 1..57 | 280 | 98.3 | Plus |
CG31286-PB | 205 | CG31286-PB | 8..164 | 5..163 | 187 | 34.7 | Plus |
CG31482-PA | 195 | CG31482-PA | 6..157 | 6..160 | 166 | 29.9 | Plus |