Clone BO17513 Report

Search the DGRC for BO17513

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG32313-RA
Protein status:BO17513.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO17513.3prime Sequence

563 bp (492 high quality bases) assembled on 2006-10-13

> BO17513.3prime
ATGGTCTAGAAAGCTTGCTGCGAACTCAAACCCATGGTCAACAATGTGTT
CTGCATCCCAAAACGTTGTCGGTCGCTTGGGAACATTGGACGCCATCTCT
CGCAAAATGTTTCCAGGAGGAGCATATCTCACCACTAGGTATCGCGTTTC
CTGTATTCTGCCTAGTCCAACGCCAAGTCTGGTGGAGGCGTTCCATATCA
TGGCCGTAAACCTGTAATACTTTGTGTTCTCGGCGAAGCCTCGGTAATGA
AACCAAATTCGAACACATTCCCTAGGCAAGGCCTCCCGGAAAACGCAGAC
GACTTGAAGGTGCTTTGCTGATATTGGGTCCGTTGCATACAGGTATTCCA
AGTAGTTCTCTGTATATACACCTTCATTCCTGACTATTTCATCTGCGTAT
TCTGAGCACTCTGTACAGAGTTCTTCGTCCAGAACCATGGGCTGATTACC
GTACTTGGCCCTCCTTCGATTGTGAGCCTCCAGGATTAAGGAGCGAATAC
CTATGCCGATTGTCTGGTTGCACTCGATGGCGATTAAAAACAAAATAATT
TTTATGCTCTTGT

BO17513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 546 CG32313-RA 3..543 559..19 2680 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 52..592 559..19 2690 99.8 Minus
CG32313-RB 735 CG32313-RB 52..595 559..19 2650 99.3 Minus
CG32313-RC 752 CG32313-RC 52..612 559..19 2470 96.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 155..390 1180 100 Plus
3L 28110227 3L 1544968..1545103 19..154 680 100 Plus
3L 28110227 3L 1545473..1545607 390..524 660 99.3 Plus
3L 28110227 3L 1545656..1545692 523..559 185 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:32:12 has no hits.

BO17513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:48 Download gff for BO17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-PA 1..546 15..560 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:32 Download gff for BO17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 46..599 10..563 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:47 Download gff for BO17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 46..599 10..563 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:47 Download gff for BO17513.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1545170..1545405 155..390 100 <- Plus
3L 1545474..1545605 391..522 99 <- Plus
3L 1545656..1545695 523..563 95   Plus
3L 1544960..1545103 10..154 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:32 Download gff for BO17513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1545474..1545605 391..522 99 <- Plus
arm_3L 1545656..1545695 523..563 95   Plus
arm_3L 1544960..1545103 10..154 97 <- Plus
arm_3L 1545170..1545405 155..390 100 <- Plus

BO17513.5prime Sequence

524 bp (506 high quality bases) assembled on 2006-10-13

> BO17513.5prime
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATG

BO17513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 546 CG32313-RA 1..508 17..524 2540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 50..557 17..524 2540 100 Plus
CG32313-RB 735 CG32313-RB 50..560 17..524 2500 99.4 Plus
CG32313-RC 752 CG32313-RC 50..577 17..524 2320 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 423..188 1180 100 Minus
3L 28110227 3L 1545473..1545607 188..54 675 100 Minus
3L 28110227 3L 1545003..1545103 524..424 505 100 Minus
3L 28110227 3L 1545656..1545694 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:36:02 has no hits.

BO17513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:50 Download gff for BO17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-PA 1..508 17..524 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:56 Download gff for BO17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..557 6..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:15 Download gff for BO17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..557 6..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:15 Download gff for BO17513.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1545003..1545103 424..524 100 <- Minus
3L 1545170..1545405 188..423 100 <- Minus
3L 1545474..1545605 56..187 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:56 Download gff for BO17513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1545003..1545103 424..524 100 <- Minus
arm_3L 1545170..1545405 188..423 100 <- Minus
arm_3L 1545474..1545605 56..187 100 <- Minus

BO17513.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ634154

> BO17513.complete
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCAGCAAGCTTTCTAGACCAT

BO17513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 546 CG32313-PA 1..543 17..559 2715 100 Plus
CG32313-RB 549 CG32313-PB 1..546 17..559 2650 99.5 Plus
CG32313-RC 198 CG32313-PC 1..174 17..187 790 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 50..592 17..559 2715 100 Plus
CG32313-RB 735 CG32313-RB 50..595 17..559 2650 99.5 Plus
CG32313-RC 752 CG32313-RC 50..612 17..559 2445 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 423..188 1180 100 Minus
3L 28110227 3L 1544968..1545103 559..424 680 100 Minus
3L 28110227 3L 1545473..1545607 188..54 675 100 Minus
3L 28110227 3L 1545656..1545694 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:34:24 has no hits.

BO17513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:30 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 1..546 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:20 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..599 6..568 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:28 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 50..592 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:31 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..599 6..568 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:45 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 50..592 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:45 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1544966..1545103 424..561 98 <- Minus
3L 1545170..1545405 188..423 100 <- Minus
3L 1545474..1545605 56..187 100 <- Minus
3L 1545656..1545694 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:28 Download gff for BO17513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1545474..1545605 56..187 100 <- Minus
arm_3L 1545656..1545694 17..55 100   Minus
arm_3L 1544966..1545103 424..561 98 <- Minus
arm_3L 1545170..1545405 188..423 100 <- Minus

BO17513.pep Sequence

Translation from 16 to 577

> BO17513.pep
MSIKIILFLIAIECNQTIGIGLRSLILEAHNRRRAKYGNQPMVLDEELCT
ECSEYADEIVRNEGVYTENYLEYLYATDPISAKHLQVVCVFREALPRECV
RIWFHYRGFAENTKYYRFTAMIWNASTRLGVGLGRIQETRYLVVRYAPPG
NILREMASNVPKRPTTFWDAEHIVDHGFEFAASFLDH

BO17513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 181 CG32313-PA 1..181 1..181 964 100 Plus
CG32313-PB 182 CG32313-PB 1..182 1..181 952 99.5 Plus
CG32313-PC 65 CG32313-PC 1..58 1..57 280 98.3 Plus
CG31286-PB 205 CG31286-PB 8..164 5..163 187 34.7 Plus
CG31482-PA 195 CG31482-PA 6..157 6..160 166 29.9 Plus