Clone BO17519 Report

Search the DGRC for BO17519

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG10469-RA
Protein status:BO17519.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO17519.3prime Sequence

683 bp (681 high quality bases) assembled on 2006-10-13

> BO17519.3prime
ATGGTCTAGAAAGCTTGCCTTAAGTCCTCCAGAGTAGTATTTAATCCACT
TGAGGTAGGAAGAAACGCGTGTGGATACGTCGGGCAGTTTTAGCTTGCAC
TCGCCATCGAATCCGTGGGATACAATTCCCACCAGGGTTCTGCTGCCATC
GTCCAAGACCATCGGACCTCCGGAGTCGCCGCGACATGGCAGACCCTTCT
TGGAATCGATGCAGATGAAGCCGTTGTGCACGACCTTTTTGCTTTTGCCG
CCCAGCTGCTTGTTCCACTGCCTCTCGCACTCCTTGTTCGAGATGATGGG
CGCCCTGATGTACTGGAGCACCTGGCTGGGCAGCTGCTTGGTGGTCAGAC
CCCAACCCGAAATGATGGCTTTGCGACCCGTGTATGTTTTCTTGGCACTG
GGCAACTTGGCGGGTTGGATATACTTGTTAAATGTAAGCTTCTTGGGTAA
TTTGATCAGGGCTATATCGTTTGTCACGGTCTTACGGTCGAACTTCTTGT
GGACGATGGTGTAGCTCCGGTTGACCACGATTTCTTTATCATCAAAGGAT
TTCACCTTTCCCACGTGGATCAGCACTTTCCAGAGATTAGACTTTGGATC
CTGCAGACAATGGGCTGCGGTTATAATCCAACGATTACTGAGGATAGTGC
CCCCGCACATATTGGGCTCATCCTTGGATCCTT

BO17519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 804 CG10469-RA 137..801 683..19 3325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 365..1029 683..19 3325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092226..6092790 19..583 2825 100 Plus
3L 28110227 3L 6092850..6092949 584..683 500 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:23:00 has no hits.

BO17519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:51 Download gff for BO17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-PA 137..804 18..683 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:45 Download gff for BO17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 365..1034 11..683 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:38 Download gff for BO17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 365..1034 11..683 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:38 Download gff for BO17519.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6092221..6092790 11..583 99 <- Plus
3L 6092850..6092949 584..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:45 Download gff for BO17519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085321..6085890 11..583 99 <- Plus
arm_3L 6085950..6086049 584..683 100   Plus

BO17519.5prime Sequence

706 bp (631 high quality bases) assembled on 2006-10-13

> BO17519.5prime
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTG

BO17519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 804 CG10469-RA 1..690 17..706 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 219..918 7..706 3455 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092337..6092790 706..253 2270 100 Minus
3L 28110227 3L 6092850..6093095 252..7 1185 98.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:24:42 has no hits.

BO17519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:52 Download gff for BO17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-PA 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:42 Download gff for BO17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..918 7..706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:00 Download gff for BO17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..918 7..706 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:00 Download gff for BO17519.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6092337..6092790 253..706 100 <- Minus
3L 6092850..6093095 7..252 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:42 Download gff for BO17519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085437..6085890 253..706 100 <- Minus
arm_3L 6085950..6086195 7..252 98   Minus

BO17519.complete Sequence

835 bp assembled on 2006-10-11

GenBank Submission: FJ634155

> BO17519.complete
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGGCAAGCTTTCTAGACCAT

BO17519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 804 CG10469-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 219..1029 7..817 4010 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092226..6092790 817..253 2825 100 Minus
3L 28110227 3L 6092850..6093095 252..7 1185 98.8 Minus
Blast to na_te.dros performed on 2014-11-27 20:23:57 has no hits.

BO17519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:31 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:25 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:33 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 229..1029 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:32 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:39 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 229..1029 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:39 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6092224..6092790 253..819 99 <- Minus
3L 6092850..6093085 17..252 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:33 Download gff for BO17519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085324..6085890 253..819 99 <- Minus
arm_3L 6085950..6086185 17..252 100   Minus

BO17519.pep Sequence

Translation from 16 to 835

> BO17519.pep
MILQLVLIVQFSLVFGQETGSLRIMNGTAAKAKQLPYQVGLLCYFEGSKD
EPNMCGGTILSNRWIITAAHCLQDPKSNLWKVLIHVGKVKSFDDKEIVVN
RSYTIVHKKFDRKTVTNDIALIKLPKKLTFNKYIQPAKLPSAKKTYTGRK
AIISGWGLTTKQLPSQVLQYIRAPIISNKECERQWNKQLGGKSKKVVHNG
FICIDSKKGLPCRGDSGGPMVLDDGSRTLVGIVSHGFDGECKLKLPDVST
RVSSYLKWIKYYSGGLKASFLDH

BO17519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 267 CG10469-PA 1..267 1..267 1405 100 Plus
CG10472-PA 290 CG10472-PA 37..284 14..264 458 43.5 Plus
CG7542-PB 270 CG7542-PB 27..260 24..259 360 38.2 Plus
CG7542-PA 270 CG7542-PA 27..260 24..259 360 38.2 Plus
CG11529-PA 287 CG11529-PA 25..256 19..260 355 36.1 Plus