Clone Sequence Records
BO17519.3prime Sequence
683 bp (681 high quality bases) assembled on 2006-10-13
> BO17519.3prime
ATGGTCTAGAAAGCTTGCCTTAAGTCCTCCAGAGTAGTATTTAATCCACT
TGAGGTAGGAAGAAACGCGTGTGGATACGTCGGGCAGTTTTAGCTTGCAC
TCGCCATCGAATCCGTGGGATACAATTCCCACCAGGGTTCTGCTGCCATC
GTCCAAGACCATCGGACCTCCGGAGTCGCCGCGACATGGCAGACCCTTCT
TGGAATCGATGCAGATGAAGCCGTTGTGCACGACCTTTTTGCTTTTGCCG
CCCAGCTGCTTGTTCCACTGCCTCTCGCACTCCTTGTTCGAGATGATGGG
CGCCCTGATGTACTGGAGCACCTGGCTGGGCAGCTGCTTGGTGGTCAGAC
CCCAACCCGAAATGATGGCTTTGCGACCCGTGTATGTTTTCTTGGCACTG
GGCAACTTGGCGGGTTGGATATACTTGTTAAATGTAAGCTTCTTGGGTAA
TTTGATCAGGGCTATATCGTTTGTCACGGTCTTACGGTCGAACTTCTTGT
GGACGATGGTGTAGCTCCGGTTGACCACGATTTCTTTATCATCAAAGGAT
TTCACCTTTCCCACGTGGATCAGCACTTTCCAGAGATTAGACTTTGGATC
CTGCAGACAATGGGCTGCGGTTATAATCCAACGATTACTGAGGATAGTGC
CCCCGCACATATTGGGCTCATCCTTGGATCCTT
BO17519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 804 | CG10469-RA | 137..801 | 683..19 | 3325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 365..1029 | 683..19 | 3325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092226..6092790 | 19..583 | 2825 | 100 | Plus |
3L | 28110227 | 3L | 6092850..6092949 | 584..683 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:23:00 has no hits.
BO17519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:51 Download gff for
BO17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-PA | 137..804 | 18..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:45 Download gff for
BO17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 365..1034 | 11..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:38 Download gff for
BO17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 365..1034 | 11..683 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:38 Download gff for
BO17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092221..6092790 | 11..583 | 99 | <- | Plus |
3L | 6092850..6092949 | 584..683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:45 Download gff for
BO17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085321..6085890 | 11..583 | 99 | <- | Plus |
arm_3L | 6085950..6086049 | 584..683 | 100 | | Plus |
BO17519.5prime Sequence
706 bp (631 high quality bases) assembled on 2006-10-13
> BO17519.5prime
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTG
BO17519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 804 | CG10469-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 219..918 | 7..706 | 3455 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092337..6092790 | 706..253 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 6092850..6093095 | 252..7 | 1185 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:42 has no hits.
BO17519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:52 Download gff for
BO17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:42 Download gff for
BO17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..918 | 7..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:00 Download gff for
BO17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..918 | 7..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:00 Download gff for
BO17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092337..6092790 | 253..706 | 100 | <- | Minus |
3L | 6092850..6093095 | 7..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:42 Download gff for
BO17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085437..6085890 | 253..706 | 100 | <- | Minus |
arm_3L | 6085950..6086195 | 7..252 | 98 | | Minus |
BO17519.complete Sequence
835 bp assembled on 2006-10-11
GenBank Submission: FJ634155
> BO17519.complete
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGGCAAGCTTTCTAGACCAT
BO17519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 804 | CG10469-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 219..1029 | 7..817 | 4010 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092226..6092790 | 817..253 | 2825 | 100 | Minus |
3L | 28110227 | 3L | 6092850..6093095 | 252..7 | 1185 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:57 has no hits.
BO17519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:31 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:25 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:33 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 229..1029 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:32 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:39 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 229..1029 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:39 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092224..6092790 | 253..819 | 99 | <- | Minus |
3L | 6092850..6093085 | 17..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:33 Download gff for
BO17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085324..6085890 | 253..819 | 99 | <- | Minus |
arm_3L | 6085950..6086185 | 17..252 | 100 | | Minus |
BO17519.pep Sequence
Translation from 16 to 835
> BO17519.pep
MILQLVLIVQFSLVFGQETGSLRIMNGTAAKAKQLPYQVGLLCYFEGSKD
EPNMCGGTILSNRWIITAAHCLQDPKSNLWKVLIHVGKVKSFDDKEIVVN
RSYTIVHKKFDRKTVTNDIALIKLPKKLTFNKYIQPAKLPSAKKTYTGRK
AIISGWGLTTKQLPSQVLQYIRAPIISNKECERQWNKQLGGKSKKVVHNG
FICIDSKKGLPCRGDSGGPMVLDDGSRTLVGIVSHGFDGECKLKLPDVST
RVSSYLKWIKYYSGGLKASFLDH
BO17519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 267 | CG10469-PA | 1..267 | 1..267 | 1405 | 100 | Plus |
CG10472-PA | 290 | CG10472-PA | 37..284 | 14..264 | 458 | 43.5 | Plus |
CG7542-PB | 270 | CG7542-PB | 27..260 | 24..259 | 360 | 38.2 | Plus |
CG7542-PA | 270 | CG7542-PA | 27..260 | 24..259 | 360 | 38.2 | Plus |
CG11529-PA | 287 | CG11529-PA | 25..256 | 19..260 | 355 | 36.1 | Plus |