Clone Sequence Records
BO17520.3prime Sequence
777 bp (741 high quality bases) assembled on 2006-10-13
> BO17520.3prime
ATGGTCTAGAAAGCTTGCTTGCAATCTACTCCAGCCCGCCAGCAGTTCAT
CCCATCCCCTGGCGTCCAACTGCTCATCTATCCAGCTGCGGAAGGCAGCC
ACATTGGTGTACACTCCTGGAAAGTTGGGATTTGCGCAGCCCAGGCCCCA
GGAAACGATGCCATATAGCCTGGCCGGACCTTCTTCCGCTGCGTAACCCA
CCAGTGGTCCGCCAGAGTCGCCCTGGCAACTATCCCGACCTGGACGCGCG
GCACAGATCATCCGCCGGGTTATGGGCAACACCTGGCTATAGGCACGCCG
GCACTGATTCGACTCCACCAGATCCACGTCCACGAAACGAAGTTGCGGAG
ACACTCCAACTTCACCGCTGACTGCACTCTCCTCGGCCTGGAAACCCCAA
CCGCTGACCTGGAGACGGGTGTCCGCGGTGGGTGGGTCCGCTAATGCGGC
CAGTGGCACTGGCTGCAGGTGCTCGGTGAAATTGAGCTGGCCATTCAAGA
TGAGCAACGCCAGGTCGTTGTCGTGGCTCTGGGGATTATAATCGCCGTGG
GCGATGACTCGCCGCAGGCTGAGCACATGGCCCCCACTCTCATGCTCGCT
GGAACCCACTCGCACTGTGTAATCTGCACTGCTCCAGGGATCCTCGAAGC
AATGGGCCGCTGTCAGTACGGTGTCGATGCCAATGATGGCTCCACCGCAT
ATGTGCCGGCCTTGCAACTGGACGGATACTTGATAGGGAAATTTCTTGAA
TGGTGGCCACCTCGCCACCCACAATCC
BO17520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-PA | 810 | CG11192-RA | 83..807 | 743..19 | 3625 | 100 | Minus |
| CG11192-PA | 810 | CG11192-RA | 50..84 | 777..743 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-RB | 960 | CG11192-RB | 94..851 | 777..19 | 3770 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20354217..20354974 | 19..777 | 3745 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:40:38 has no hits.
BO17520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:53 Download gff for
BO17520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-PA | 50..810 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:07 Download gff for
BO17520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 94..854 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:17 Download gff for
BO17520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 94..854 | 15..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:17 Download gff for
BO17520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20354214..20354974 | 15..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:07 Download gff for
BO17520.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16241719..16242479 | 15..777 | 99 | | Plus |
BO17520.5prime Sequence
762 bp (685 high quality bases) assembled on 2006-10-13
> BO17520.5prime
GAAGTTATCAGTCGACATGGCACTCGTGGCATATGCCGGAGCCACGCCCA
CTCCCGGCGATGGGCGGATTGTGGGTGGCGAGGTGGCCACCATTCAAGAA
TTTCCCTATCAAGTATCCGTCCAGTTGCAAGGCCGGCACATATGCGGTGG
AGCCATCATTGGCATCGACACCGTACTGACAGCGGCCCATTGCTTCGAGG
ATCCCTGGAGCAGTGCAGATTACACAGTGCGAGTGGGTTCCAGCGAGCAT
GAGAGTGGGGGCCATGTGCTCAGCCTGCGGCGAGTCATCGCCCACGGCGA
TTATAATCCCCAGAGCCACGACAACGACCTGGCGTTGCTCATCTTGAATG
GCCAGCTCAATTTCACCGAGCACCTGCAGCCAGTGCCACTGGCCGCATTA
GCGGACCCACCCACCGCGGACACCCGTCTCCAGGTCAGCGGTTGGGGTTT
CCAGGCCGAGGAGAGTGCAGTCAGCGGTGAAGTTGGAGTGTCTCCGCAAC
TTCGTTTCGTGGACGTGGATCTGGTGGAGTCGAATCAGTGCCGGCGTGCC
TATAGCCAGGTGTTGCCCATAACCCGGCGGATGATCTGTGCCGCGCGTCC
AGGTCGGGATAGTTGCCAGGGCGACTCTGGCGGACCACTGGTGGGTTACG
CAGCGGAAGAAGGTCCGGCCAGGCTATATGGCATCGTTTCCTGGGGCCTG
GGCTGCGCAAATCCCAACTTTCCAGGAGTGTACACCAATGTGGCTGCCTT
CCGCAGCTGGAT
BO17520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-PA | 810 | CG11192-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-RB | 960 | CG11192-RB | 45..790 | 17..762 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20354278..20355023 | 762..17 | 3730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:59 has no hits.
BO17520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:53 Download gff for
BO17520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:44 Download gff for
BO17520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 45..790 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:40 Download gff for
BO17520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 45..790 | 17..762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:40 Download gff for
BO17520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20354278..20355023 | 17..762 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:44 Download gff for
BO17520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16241783..16242528 | 17..762 | 100 | | Minus |
BO17520.complete Sequence
841 bp assembled on 2006-10-11
GenBank Submission: FJ634156
> BO17520.complete
GAAGTTATCAGTCGACATGGCACTCGTGGCATATGCCGGAGCCACGCCCA
CTCCCGGCGATGGGCGGATTGTGGGTGGCGAGGTGGCCACCATTCAAGAA
TTTCCCTATCAAGTATCCGTCCAGTTGCAAGGCCGGCACATATGCGGTGG
AGCCATCATTGGCATCGACACCGTACTGACAGCGGCCCATTGCTTCGAGG
ATCCCTGGAGCAGTGCAGATTACACAGTGCGAGTGGGTTCCAGCGAGCAT
GAGAGTGGGGGCCATGTGCTCAGCCTGCGGCGAGTCATCGCCCACGGCGA
TTATAATCCCCAGAGCCACGACAACGACCTGGCGTTGCTCATCTTGAATG
GCCAGCTCAATTTCACCGAGCACCTGCAGCCAGTGCCACTGGCCGCATTA
GCGGACCCACCCACCGCGGACACCCGTCTCCAGGTCAGCGGTTGGGGTTT
CCAGGCCGAGGAGAGTGCAGTCAGCGGTGAAGTTGGAGTGTCTCCGCAAC
TTCGTTTCGTGGACGTGGATCTGGTGGAGTCGAATCAGTGCCGGCGTGCC
TATAGCCAGGTGTTGCCCATAACCCGGCGGATGATCTGTGCCGCGCGTCC
AGGTCGGGATAGTTGCCAGGGCGACTCTGGCGGACCACTGGTGGGTTACG
CAGCGGAAGAAGGTCCGGCCAGGCTATATGGCATCGTTTCCTGGGGCCTG
GGCTGCGCAAATCCCAACTTTCCAGGAGTGTACACCAATGTGGCTGCCTT
CCGCAGCTGGATAGATGAGCAGTTGGACGCCAGGGGATGGGATGAACTGC
TGGCGGGCTGGAGTAGATTGCAAGCAAGCTTTCTAGACCAT
BO17520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-RB | 840 | CG11192-PB | 31..837 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-RB | 960 | CG11192-RB | 45..851 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20354217..20355023 | 823..17 | 4035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:06:08 has no hits.
BO17520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:36 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 31..840 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:00 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 31..840 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:00 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 45..851 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:36 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 31..840 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:31 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11192-RB | 45..851 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:31 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20354215..20355023 | 17..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:00 Download gff for
BO17520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16241720..16242528 | 17..825 | 99 | | Minus |
BO17520.pep Sequence
Translation from 16 to 841
> BO17520.pep
MALVAYAGATPTPGDGRIVGGEVATIQEFPYQVSVQLQGRHICGGAIIGI
DTVLTAAHCFEDPWSSADYTVRVGSSEHESGGHVLSLRRVIAHGDYNPQS
HDNDLALLILNGQLNFTEHLQPVPLAALADPPTADTRLQVSGWGFQAEES
AVSGEVGVSPQLRFVDVDLVESNQCRRAYSQVLPITRRMICAARPGRDSC
QGDSGGPLVGYAAEEGPARLYGIVSWGLGCANPNFPGVYTNVAAFRSWID
EQLDARGWDELLAGWSRLQASFLDH
BO17520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11192-PB | 279 | CG11192-PB | 11..279 | 1..269 | 1429 | 100 | Plus |
| CG13430-PB | 267 | CG13430-PB | 19..264 | 5..254 | 483 | 41.5 | Plus |
| CG13430-PA | 267 | CG13430-PA | 19..264 | 5..254 | 483 | 41.5 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 28..249 | 15..249 | 461 | 41.9 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 28..249 | 15..249 | 461 | 41.9 | Plus |
