Clone BO17522 Report

Search the DGRC for BO17522

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG18449-RA
Protein status:BO17522.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO17522.3prime Sequence

509 bp (509 high quality bases) assembled on 2006-10-13

> BO17522.3prime
ATGGTCTAGAAAGCTTGCGTATCCATCAAACGCCATTCGATCTGATGCAG
CTTCTACGTAACGCCTTTTGTTTTTGCTTTGGGTGGAGATAAACTGCGAG
ATGAATTGTTTAGCAGGCATTGCGATCCTCTGGAGGCGCCTATTGGGGTC
GGTAGTTCGGCGGAGTTCACGAATGTGGGGTCGCTCCTCCTGTGAACGCG
AGTCCTTCGCCTCCTTATGGGCTTCCTCATTTGGGATGACAGCTTCCCGC
CAGGTGGCCTGATATTTCCGCTCCGTCCAACGACCTGGCCTGTATTTGGT
GTCATCCATGCGCTCCTCAATCTGCGGCTGCATCTGTGATTGTGGCCAAG
TTCTCTGGTGGTTTCGCTCTTGATTGGAGTTGAGTTTGTAGTGAATTTCA
TCCAAACGTAACTGCTTCATTCCGCGACGCGTCACCAGATTTTCAAGTCC
GAAGGCCACTATCCTGCTGCTTAACAAAGCTTTTGTCGAATTCATGTCGA
CTGATAACT

BO17522.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-PA 480 CG18449-RA 1..477 495..19 2385 100 Minus
CG18449-PB 348 CG18449-RB 1..348 401..54 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-RA 765 CG18449-RA 120..596 495..19 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8367332..8367808 19..495 2385 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:32:33 has no hits.

BO17522.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:55 Download gff for BO17522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-PA 1..480 18..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:36 Download gff for BO17522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 12..503 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:16 Download gff for BO17522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 12..503 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:16 Download gff for BO17522.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8367327..8367812 12..503 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:36 Download gff for BO17522.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4254832..4255317 12..503 98   Plus

BO17522.5prime Sequence

509 bp (509 high quality bases) assembled on 2006-10-13

> BO17522.5prime
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACGCAAGCT
TTCTAGACC

BO17522.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-PA 480 CG18449-RA 1..477 17..493 2385 100 Plus
CG18449-PB 348 CG18449-RB 1..348 111..458 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-RA 765 CG18449-RA 120..596 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8367332..8367808 493..17 2385 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:08:52 has no hits.

BO17522.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:56 Download gff for BO17522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-PA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:34 Download gff for BO17522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 9..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:47 Download gff for BO17522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 9..500 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:47 Download gff for BO17522.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8367327..8367812 9..500 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:34 Download gff for BO17522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4254832..4255317 9..500 98   Minus

BO17522.complete Sequence

511 bp assembled on 2006-10-11

GenBank Submission: FJ634157

> BO17522.complete
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACGCAAGCT
TTCTAGACCAT

BO17522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-RA 480 CG18449-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-RA 765 CG18449-RA 120..596 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8367332..8367808 493..17 2385 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:48:41 has no hits.

BO17522.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:47 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:29 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 9..500 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:31 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 120..596 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:49 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 116..601 9..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:18 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 120..596 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:18 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8367328..8367808 17..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:31 Download gff for BO17522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4254833..4255313 17..495 99   Minus

BO17522.pep Sequence

Translation from 16 to 511

> BO17522.pep
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGYASFLDH

BO17522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-PA 159 CG18449-PA 1..159 1..159 829 100 Plus