Clone Sequence Records
BO17522.3prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO17522.3prime
ATGGTCTAGAAAGCTTGCGTATCCATCAAACGCCATTCGATCTGATGCAG
CTTCTACGTAACGCCTTTTGTTTTTGCTTTGGGTGGAGATAAACTGCGAG
ATGAATTGTTTAGCAGGCATTGCGATCCTCTGGAGGCGCCTATTGGGGTC
GGTAGTTCGGCGGAGTTCACGAATGTGGGGTCGCTCCTCCTGTGAACGCG
AGTCCTTCGCCTCCTTATGGGCTTCCTCATTTGGGATGACAGCTTCCCGC
CAGGTGGCCTGATATTTCCGCTCCGTCCAACGACCTGGCCTGTATTTGGT
GTCATCCATGCGCTCCTCAATCTGCGGCTGCATCTGTGATTGTGGCCAAG
TTCTCTGGTGGTTTCGCTCTTGATTGGAGTTGAGTTTGTAGTGAATTTCA
TCCAAACGTAACTGCTTCATTCCGCGACGCGTCACCAGATTTTCAAGTCC
GAAGGCCACTATCCTGCTGCTTAACAAAGCTTTTGTCGAATTCATGTCGA
CTGATAACT
BO17522.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-PA | 480 | CG18449-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
CG18449-PB | 348 | CG18449-RB | 1..348 | 401..54 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-RA | 765 | CG18449-RA | 120..596 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8367332..8367808 | 19..495 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:32:33 has no hits.
BO17522.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:55 Download gff for
BO17522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-PA | 1..480 | 18..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:36 Download gff for
BO17522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 12..503 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:16 Download gff for
BO17522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 12..503 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:16 Download gff for
BO17522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367327..8367812 | 12..503 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:36 Download gff for
BO17522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4254832..4255317 | 12..503 | 98 | | Plus |
BO17522.5prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO17522.5prime
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACGCAAGCT
TTCTAGACC
BO17522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-PA | 480 | CG18449-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG18449-PB | 348 | CG18449-RB | 1..348 | 111..458 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-RA | 765 | CG18449-RA | 120..596 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8367332..8367808 | 493..17 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:08:52 has no hits.
BO17522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:56 Download gff for
BO17522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-PA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:34 Download gff for
BO17522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 9..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:47 Download gff for
BO17522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 9..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:47 Download gff for
BO17522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367327..8367812 | 9..500 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:34 Download gff for
BO17522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4254832..4255317 | 9..500 | 98 | | Minus |
BO17522.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ634157
> BO17522.complete
GAAGTTATCAGTCGACATGAATTCGACAAAAGCTTTGTTAAGCAGCAGGA
TAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGCAG
TTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGAAA
CCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGAGC
GCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAATAT
CAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAGGA
GGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACTCC
GCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTGCT
AAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGGCG
TTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACGCAAGCT
TTCTAGACCAT
BO17522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-RA | 480 | CG18449-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-RA | 765 | CG18449-RA | 120..596 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8367332..8367808 | 493..17 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:41 has no hits.
BO17522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:47 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:29 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 9..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:31 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 120..596 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:49 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 116..601 | 9..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:18 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 120..596 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:18 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367328..8367808 | 17..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:31 Download gff for
BO17522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4254833..4255313 | 17..495 | 99 | | Minus |
BO17522.pep Sequence
Translation from 16 to 511
> BO17522.pep
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGYASFLDH
BO17522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-PA | 159 | CG18449-PA | 1..159 | 1..159 | 829 | 100 | Plus |