Clone BO17523 Report

Search the DGRC for BO17523

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG6480-RA
Protein status:BO17523.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO17523.3prime Sequence

788 bp (699 high quality bases) assembled on 2006-10-13

> BO17523.3prime
ATGGTCTAGAAAGCTTGCCTTGCAATACCGATCGGCTTTCATTTTACTGC
GTCTATCCAGAAGAGTTTCATGCAAAGATCCCTGAGCTTTTGCCTGCTCG
AGTTCTTTGACATCGTTCTGATTAATCCGCATCTTCTTGTCCTGGAACTT
TTGAAATTTTTTCACATAGTTCTTCTCGACTTCGCCCAAGTCTCCCTTTT
CTTCCTTGGGCTCCGTATCGATGACCACATCCCTGCTCGCATTACTCCGC
ACTTTACAGATCTCATGCTGACCCACCTTCTTTCGCAATGCCACGCAGGC
GTCGTCTTGGGGATCGATCGACATAAAGTGTCCGGTTTCGGATAGAAGAG
CCATTCGTTGTTCCTCAAAAACCGGCTCCCACTGCTCCATGCCGCCCACT
GCTTCGGAGCGCCCCGTGACCATTCCATCCTTCTCAATTTTCAAGTACTT
GCCATAGCCAGACTTAAACGCTACCTTTCGGTCGTTGATGGGAAAAGCCG
TGAAAATCTCCTCGGGATCTGGGCCATCGCCAGCGTTGTGTGGTGCTCCC
AATGTGAAGAGACCATTGTCCATGGCCTTTAGGTAACTCCTATCGCCAAA
CTCTATGGACACTGTACCGGTGATGTCGGCCGCTGTCTTTGCTGCCCACC
AACCGCCGTGCTTCACGGCATCCTCATCCACTACTACCTTGGCCTTTTTG
GAAGATCCAGCCTCATCCTTTTCCTTCTTGCGTTTTTTGCTCTTTTTGAG
TTTCTCGCCTTTTAGAACCAATTTCTTATGGCGTGCAT

BO17523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6480-PA 789 CG6480-RA 27..786 778..19 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 88..857 788..19 3820 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296084..20296286 163..365 1015 100 Plus
3L 28110227 3L 20296343..20296543 363..563 1005 100 Plus
3L 28110227 3L 20296607..20296789 563..745 915 100 Plus
3L 28110227 3L 20295848..20295992 19..163 725 100 Plus
3L 28110227 3L 20296842..20296884 746..788 185 95.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:06:39 has no hits.

BO17523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:56 Download gff for BO17523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-PA 17..789 15..788 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:55 Download gff for BO17523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 88..860 15..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:44 Download gff for BO17523.3prime
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 88..860 15..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:44 Download gff for BO17523.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20296344..20296542 364..562 100 <- Plus
3L 20296607..20296789 563..745 100 <- Plus
3L 20296842..20296884 746..788 95   Plus
3L 20295844..20295992 15..163 98 <- Plus
3L 20296085..20296284 164..363 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:55 Download gff for BO17523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20288944..20289092 15..163 98 <- Plus
arm_3L 20289185..20289384 164..363 100 <- Plus
arm_3L 20289444..20289642 364..562 100 <- Plus
arm_3L 20289707..20289889 563..745 100 <- Plus
arm_3L 20289942..20289984 746..788 95   Plus

BO17523.5prime Sequence

778 bp (655 high quality bases) assembled on 2006-10-13

> BO17523.5prime
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGNAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAA

BO17523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6480-PA 789 CG6480-RA 1..762 17..778 3791 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 72..833 17..778 3799 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296084..20296286 658..456 1015 100 Minus
3L 28110227 3L 20296343..20296543 458..258 1005 100 Minus
3L 28110227 3L 20296607..20296789 258..76 915 100 Minus
3L 28110227 3L 20295872..20295990 778..660 595 100 Minus
3L 28110227 3L 20296842..20296900 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:57:02 has no hits.

BO17523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:58 Download gff for BO17523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:32 Download gff for BO17523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 62..830 5..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:43 Download gff for BO17523.5prime
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 62..830 5..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:43 Download gff for BO17523.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20296607..20296789 76..258 100 <- Minus
3L 20295875..20295992 658..775 99 <- Minus
3L 20296085..20296284 458..657 100 <- Minus
3L 20296344..20296542 259..457 100 <- Minus
3L 20296842..20296909 5..75 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:32 Download gff for BO17523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20289444..20289642 259..457 100 <- Minus
arm_3L 20289707..20289889 76..258 100 <- Minus
arm_3L 20289942..20290009 5..75 93   Minus
arm_3L 20289185..20289384 458..657 100 <- Minus
arm_3L 20288975..20289092 658..775 99 <- Minus

BO17523.complete Sequence

820 bp assembled on 2006-10-11

GenBank Submission: FJ634158

> BO17523.complete
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGGCAAGCTTTCTAGACCAT

BO17523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 789 CG6480-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 72..857 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296084..20296286 658..456 1015 100 Minus
3L 28110227 3L 20296343..20296543 458..258 1005 100 Minus
3L 28110227 3L 20296607..20296789 258..76 915 100 Minus
3L 28110227 3L 20295848..20295992 802..658 725 100 Minus
3L 28110227 3L 20296842..20296900 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:51:58 has no hits.

BO17523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:49 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:48 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 26..824 5..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:21 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 72..857 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:49 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:40 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 72..857 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:40 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20295846..20295992 658..804 98 <- Minus
3L 20296085..20296284 458..657 100 <- Minus
3L 20296344..20296542 259..457 100 <- Minus
3L 20296607..20296789 76..258 100 <- Minus
3L 20296842..20296900 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:21 Download gff for BO17523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20288946..20289092 658..804 98 <- Minus
arm_3L 20289185..20289384 458..657 100 <- Minus
arm_3L 20289444..20289642 259..457 100 <- Minus
arm_3L 20289707..20289889 76..258 100 <- Minus
arm_3L 20289942..20290000 17..75 100   Minus

BO17523.pep Sequence

Translation from 16 to 820

> BO17523.pep
MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEAGSSKKAKVVVDEDAVKHG
GWWAAKTAADITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEI
FTAFPINDRKVAFKSGYGKYLKIEKDGMVTGRSEAVGGMEQWEPVFEEQR
MALLSETGHFMSIDPQDDACVALRKKVGQHEICKVRSNASRDVVIDTEPK
EEKGDLGEVEKNYVKKFQKFQDKKMRINQNDVKELEQAKAQGSLHETLLD
RRSKMKADRYCKASFLDH

BO17523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-PA 262 CG6480-PA 1..262 1..262 1365 100 Plus