Clone Sequence Records
BO17523.3prime Sequence
788 bp (699 high quality bases) assembled on 2006-10-13
> BO17523.3prime
ATGGTCTAGAAAGCTTGCCTTGCAATACCGATCGGCTTTCATTTTACTGC
GTCTATCCAGAAGAGTTTCATGCAAAGATCCCTGAGCTTTTGCCTGCTCG
AGTTCTTTGACATCGTTCTGATTAATCCGCATCTTCTTGTCCTGGAACTT
TTGAAATTTTTTCACATAGTTCTTCTCGACTTCGCCCAAGTCTCCCTTTT
CTTCCTTGGGCTCCGTATCGATGACCACATCCCTGCTCGCATTACTCCGC
ACTTTACAGATCTCATGCTGACCCACCTTCTTTCGCAATGCCACGCAGGC
GTCGTCTTGGGGATCGATCGACATAAAGTGTCCGGTTTCGGATAGAAGAG
CCATTCGTTGTTCCTCAAAAACCGGCTCCCACTGCTCCATGCCGCCCACT
GCTTCGGAGCGCCCCGTGACCATTCCATCCTTCTCAATTTTCAAGTACTT
GCCATAGCCAGACTTAAACGCTACCTTTCGGTCGTTGATGGGAAAAGCCG
TGAAAATCTCCTCGGGATCTGGGCCATCGCCAGCGTTGTGTGGTGCTCCC
AATGTGAAGAGACCATTGTCCATGGCCTTTAGGTAACTCCTATCGCCAAA
CTCTATGGACACTGTACCGGTGATGTCGGCCGCTGTCTTTGCTGCCCACC
AACCGCCGTGCTTCACGGCATCCTCATCCACTACTACCTTGGCCTTTTTG
GAAGATCCAGCCTCATCCTTTTCCTTCTTGCGTTTTTTGCTCTTTTTGAG
TTTCTCGCCTTTTAGAACCAATTTCTTATGGCGTGCAT
BO17523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6480-PA | 789 | CG6480-RA | 27..786 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 88..857 | 788..19 | 3820 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296084..20296286 | 163..365 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 20296343..20296543 | 363..563 | 1005 | 100 | Plus |
3L | 28110227 | 3L | 20296607..20296789 | 563..745 | 915 | 100 | Plus |
3L | 28110227 | 3L | 20295848..20295992 | 19..163 | 725 | 100 | Plus |
3L | 28110227 | 3L | 20296842..20296884 | 746..788 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:06:39 has no hits.
BO17523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:56 Download gff for
BO17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-PA | 17..789 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:55 Download gff for
BO17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 88..860 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:44 Download gff for
BO17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 88..860 | 15..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:44 Download gff for
BO17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20296344..20296542 | 364..562 | 100 | <- | Plus |
3L | 20296607..20296789 | 563..745 | 100 | <- | Plus |
3L | 20296842..20296884 | 746..788 | 95 | | Plus |
3L | 20295844..20295992 | 15..163 | 98 | <- | Plus |
3L | 20296085..20296284 | 164..363 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:55 Download gff for
BO17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20288944..20289092 | 15..163 | 98 | <- | Plus |
arm_3L | 20289185..20289384 | 164..363 | 100 | <- | Plus |
arm_3L | 20289444..20289642 | 364..562 | 100 | <- | Plus |
arm_3L | 20289707..20289889 | 563..745 | 100 | <- | Plus |
arm_3L | 20289942..20289984 | 746..788 | 95 | | Plus |
BO17523.5prime Sequence
778 bp (655 high quality bases) assembled on 2006-10-13
> BO17523.5prime
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGNAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAA
BO17523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6480-PA | 789 | CG6480-RA | 1..762 | 17..778 | 3791 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 72..833 | 17..778 | 3799 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296084..20296286 | 658..456 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 20296343..20296543 | 458..258 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 20296607..20296789 | 258..76 | 915 | 100 | Minus |
3L | 28110227 | 3L | 20295872..20295990 | 778..660 | 595 | 100 | Minus |
3L | 28110227 | 3L | 20296842..20296900 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:57:02 has no hits.
BO17523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:58 Download gff for
BO17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:32 Download gff for
BO17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 62..830 | 5..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:43 Download gff for
BO17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 62..830 | 5..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:43 Download gff for
BO17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20296607..20296789 | 76..258 | 100 | <- | Minus |
3L | 20295875..20295992 | 658..775 | 99 | <- | Minus |
3L | 20296085..20296284 | 458..657 | 100 | <- | Minus |
3L | 20296344..20296542 | 259..457 | 100 | <- | Minus |
3L | 20296842..20296909 | 5..75 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:32 Download gff for
BO17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20289444..20289642 | 259..457 | 100 | <- | Minus |
arm_3L | 20289707..20289889 | 76..258 | 100 | <- | Minus |
arm_3L | 20289942..20290009 | 5..75 | 93 | | Minus |
arm_3L | 20289185..20289384 | 458..657 | 100 | <- | Minus |
arm_3L | 20288975..20289092 | 658..775 | 99 | <- | Minus |
BO17523.complete Sequence
820 bp assembled on 2006-10-11
GenBank Submission: FJ634158
> BO17523.complete
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGGCAAGCTTTCTAGACCAT
BO17523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 789 | CG6480-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 72..857 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296084..20296286 | 658..456 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 20296343..20296543 | 458..258 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 20296607..20296789 | 258..76 | 915 | 100 | Minus |
3L | 28110227 | 3L | 20295848..20295992 | 802..658 | 725 | 100 | Minus |
3L | 28110227 | 3L | 20296842..20296900 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:58 has no hits.
BO17523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:49 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:48 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 26..824 | 5..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:21 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 72..857 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:49 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:40 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 72..857 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:40 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20295846..20295992 | 658..804 | 98 | <- | Minus |
3L | 20296085..20296284 | 458..657 | 100 | <- | Minus |
3L | 20296344..20296542 | 259..457 | 100 | <- | Minus |
3L | 20296607..20296789 | 76..258 | 100 | <- | Minus |
3L | 20296842..20296900 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:21 Download gff for
BO17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20288946..20289092 | 658..804 | 98 | <- | Minus |
arm_3L | 20289185..20289384 | 458..657 | 100 | <- | Minus |
arm_3L | 20289444..20289642 | 259..457 | 100 | <- | Minus |
arm_3L | 20289707..20289889 | 76..258 | 100 | <- | Minus |
arm_3L | 20289942..20290000 | 17..75 | 100 | | Minus |
BO17523.pep Sequence
Translation from 16 to 820
> BO17523.pep
MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEAGSSKKAKVVVDEDAVKHG
GWWAAKTAADITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEI
FTAFPINDRKVAFKSGYGKYLKIEKDGMVTGRSEAVGGMEQWEPVFEEQR
MALLSETGHFMSIDPQDDACVALRKKVGQHEICKVRSNASRDVVIDTEPK
EEKGDLGEVEKNYVKKFQKFQDKKMRINQNDVKELEQAKAQGSLHETLLD
RRSKMKADRYCKASFLDH
BO17523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-PA | 262 | CG6480-PA | 1..262 | 1..262 | 1365 | 100 | Plus |