Clone Sequence Records
BO17524.3prime Sequence
834 bp (763 high quality bases) assembled on 2006-10-13
> BO17524.3prime
ATGGTCTAGAAAGCTTGCTCTATACTGATTATCATCTCGATCCGTTTCCG
GATCTTCAGTCAAATCAGTAGTTGGCGGTGGATCCGTTTCCGTATCTGGA
TCGGATTTCGTAAACTCATCCGGTTCAAGACTGCCCACAAGTCCCAGATC
TTGGGTCTCTGGCTCAAATGGATCCCAACACGGAGCCTTCGGTGGTTCAT
TGATAATCGAATCACGCATGGCACGCATTCCCATCTCAAGGGCGCAGTCC
ATGGAATTTCTGTCAGGTGGTTCGCGGGTTAGAGGCCCATTGAAATGCAC
ATAAATGTCTCCCTGGGCAGCCAAATCTAGTCCGTAGGTGGTTAGATCCT
CACCAAAGACCAGCTGCGTGGCGCCCGGATCCGTTTGCGTAGTCCTCATG
GCGGCCAGCAGCCCAATGATCCCAAATTGATCTGACAGCATCGTGGCCGG
AATATTAGTGAATTTCCCATCGTCTGTACTACGTATTCCCGCGGCATTTG
TGTTCGTTGAGGAGGAGGTAGATGCCACCTCGGGCTCCTGCAACACTGAT
TCATAAGAGGGCTGACCAAAAAGATCAGCAAACGTGGGCATCGACGGCTG
GCGATCGTAGAGTTCCGGGAAGAGTTTGTAATCCGATTCGATTTCAGATT
CTACGCTCGAAGTGCTGACGACTTCCGGTGGCTCTTCGCTGGGCGGATCC
GGCAAGGGCGGTGGACGTTGTGGCTCTACCTTTTCTGCACTGGGTGCAGT
CTCCTGTTTCTTCTTTCTCAGCGCTATCGAGGGATTCACCTTACATCGTG
GACGTCGACGCCGTGTCATGTCCACTGATAACTT
BO17524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 804 | CG6576-RA | 1..801 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..995 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756983 | 819..19 | 4005 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 91..150 | 111 | 65 | Plus |
BO17524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:59 Download gff for
BO17524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-PA | 1..804 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:34 Download gff for
BO17524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..998 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:20 Download gff for
BO17524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..998 | 15..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:20 Download gff for
BO17524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756986 | 15..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:34 Download gff for
BO17524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750086 | 15..819 | 99 | | Minus |
BO17524.5prime Sequence
833 bp (724 high quality bases) assembled on 2006-10-13
> BO17524.5prime
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGAGCAGGCTTTCTAGACC
BO17524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 804 | CG6576-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..995 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756983 | 17..817 | 4005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 745..686 | 111 | 65 | Minus |
BO17524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:59 Download gff for
BO17524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:05:02 Download gff for
BO17524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..995 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:13 Download gff for
BO17524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..995 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:13 Download gff for
BO17524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756983 | 17..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:05:02 Download gff for
BO17524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750083 | 17..817 | 100 | | Plus |
BO17524.complete Sequence
835 bp assembled on 2006-10-11
GenBank Submission: FJ634159
> BO17524.complete
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGAGCAAGCTTTCTAGACCAT
BO17524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 804 | CG6576-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-RA | 1179 | CG6576-RA | 195..995 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8756183..8756983 | 17..817 | 4005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 2638..2697 | 745..686 | 111 | 65 | Minus |
BO17524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:00 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:02 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..998 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:49 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..995 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:00 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..998 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:26 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6576-RA | 195..995 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:26 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8756183..8756983 | 17..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:49 Download gff for
BO17524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8749283..8750083 | 17..819 | 99 | | Plus |
BO17524.pep Sequence
Translation from 16 to 835
> BO17524.pep
MTRRRRPRCKVNPSIALRKKKQETAPSAEKVEPQRPPPLPDPPSEEPPEV
VSTSSVESEIESDYKLFPELYDRQPSMPTFADLFGQPSYESVLQEPEVAS
TSSSTNTNAAGIRSTDDGKFTNIPATMLSDQFGIIGLLAAMRTTQTDPGA
TQLVFGEDLTTYGLDLAAQGDIYVHFNGPLTREPPDRNSMDCALEMGMRA
MRDSIINEPPKAPCWDPFEPETQDLGLVGSLEPDEFTKSDPDTETDPPPT
TDLTEDPETDRDDNQYRASFLDH
BO17524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6576-PA | 267 | CG6576-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
Rga-PC | 579 | CG2161-PC | 368..450 | 102..184 | 190 | 43.4 | Plus |
Rga-PB | 579 | CG2161-PB | 368..450 | 102..184 | 190 | 43.4 | Plus |
Rga-PA | 585 | CG2161-PA | 374..456 | 102..184 | 190 | 43.4 | Plus |