Clone BO17524 Report

Search the DGRC for BO17524

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG6576-RA
Protein status:BO17524.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO17524.3prime Sequence

834 bp (763 high quality bases) assembled on 2006-10-13

> BO17524.3prime
ATGGTCTAGAAAGCTTGCTCTATACTGATTATCATCTCGATCCGTTTCCG
GATCTTCAGTCAAATCAGTAGTTGGCGGTGGATCCGTTTCCGTATCTGGA
TCGGATTTCGTAAACTCATCCGGTTCAAGACTGCCCACAAGTCCCAGATC
TTGGGTCTCTGGCTCAAATGGATCCCAACACGGAGCCTTCGGTGGTTCAT
TGATAATCGAATCACGCATGGCACGCATTCCCATCTCAAGGGCGCAGTCC
ATGGAATTTCTGTCAGGTGGTTCGCGGGTTAGAGGCCCATTGAAATGCAC
ATAAATGTCTCCCTGGGCAGCCAAATCTAGTCCGTAGGTGGTTAGATCCT
CACCAAAGACCAGCTGCGTGGCGCCCGGATCCGTTTGCGTAGTCCTCATG
GCGGCCAGCAGCCCAATGATCCCAAATTGATCTGACAGCATCGTGGCCGG
AATATTAGTGAATTTCCCATCGTCTGTACTACGTATTCCCGCGGCATTTG
TGTTCGTTGAGGAGGAGGTAGATGCCACCTCGGGCTCCTGCAACACTGAT
TCATAAGAGGGCTGACCAAAAAGATCAGCAAACGTGGGCATCGACGGCTG
GCGATCGTAGAGTTCCGGGAAGAGTTTGTAATCCGATTCGATTTCAGATT
CTACGCTCGAAGTGCTGACGACTTCCGGTGGCTCTTCGCTGGGCGGATCC
GGCAAGGGCGGTGGACGTTGTGGCTCTACCTTTTCTGCACTGGGTGCAGT
CTCCTGTTTCTTCTTTCTCAGCGCTATCGAGGGATTCACCTTACATCGTG
GACGTCGACGCCGTGTCATGTCCACTGATAACTT

BO17524.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 804 CG6576-RA 1..801 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..995 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756983 819..19 4005 100 Minus
Blast to na_te.dros performed 2015-02-12 17:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 91..150 111 65 Plus

BO17524.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:59 Download gff for BO17524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-PA 1..804 15..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:34 Download gff for BO17524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..998 15..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:20 Download gff for BO17524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..998 15..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:20 Download gff for BO17524.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756986 15..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:34 Download gff for BO17524.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750086 15..819 99   Minus

BO17524.5prime Sequence

833 bp (724 high quality bases) assembled on 2006-10-13

> BO17524.5prime
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGAGCAGGCTTTCTAGACC

BO17524.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 804 CG6576-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..995 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756983 17..817 4005 100 Plus
Blast to na_te.dros performed 2015-02-11 09:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 745..686 111 65 Minus

BO17524.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:08:59 Download gff for BO17524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-PA 1..804 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:05:02 Download gff for BO17524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..995 17..817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:13 Download gff for BO17524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..995 17..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:13 Download gff for BO17524.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756983 17..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:05:02 Download gff for BO17524.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750083 17..817 100   Plus

BO17524.complete Sequence

835 bp assembled on 2006-10-11

GenBank Submission: FJ634159

> BO17524.complete
GAAGTTATCAGTCGACATGACACGGCGTCGACGTCCACGATGTAAGGTGA
ATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGTGCA
GAAAAGGTAGAGCCACAACGTCCACCGCCCTTGCCGGATCCGCCCAGCGA
AGAGCCACCGGAAGTCGTCAGCACTTCGAGCGTAGAATCTGAAATCGAAT
CGGATTACAAACTCTTCCCGGAACTCTACGATCGCCAGCCGTCGATGCCC
ACGTTTGCTGATCTTTTTGGTCAGCCCTCTTATGAATCAGTGTTGCAGGA
GCCCGAGGTGGCATCTACCTCCTCCTCAACGAACACAAATGCCGCGGGAA
TACGTAGTACAGACGATGGGAAATTCACTAATATTCCGGCCACGATGCTG
TCAGATCAATTTGGGATCATTGGGCTGCTGGCCGCCATGAGGACTACGCA
AACGGATCCGGGCGCCACGCAGCTGGTCTTTGGTGAGGATCTAACCACCT
ACGGACTAGATTTGGCTGCCCAGGGAGACATTTATGTGCATTTCAATGGG
CCTCTAACCCGCGAACCACCTGACAGAAATTCCATGGACTGCGCCCTTGA
GATGGGAATGCGTGCCATGCGTGATTCGATTATCAATGAACCACCGAAGG
CTCCGTGTTGGGATCCATTTGAGCCAGAGACCCAAGATCTGGGACTTGTG
GGCAGTCTTGAACCGGATGAGTTTACGAAATCCGATCCAGATACGGAAAC
GGATCCACCGCCAACTACTGATTTGACTGAAGATCCGGAAACGGATCGAG
ATGATAATCAGTATAGAGCAAGCTTTCTAGACCAT

BO17524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 804 CG6576-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-RA 1179 CG6576-RA 195..995 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8756183..8756983 17..817 4005 100 Plus
Blast to na_te.dros performed 2014-11-27 12:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 2638..2697 745..686 111 65 Minus

BO17524.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:00 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 1..804 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:02 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..998 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:49 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..995 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:00 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..998 17..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:26 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
CG6576-RA 195..995 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:26 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8756183..8756983 17..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:49 Download gff for BO17524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8749283..8750083 17..819 99   Plus

BO17524.pep Sequence

Translation from 16 to 835

> BO17524.pep
MTRRRRPRCKVNPSIALRKKKQETAPSAEKVEPQRPPPLPDPPSEEPPEV
VSTSSVESEIESDYKLFPELYDRQPSMPTFADLFGQPSYESVLQEPEVAS
TSSSTNTNAAGIRSTDDGKFTNIPATMLSDQFGIIGLLAAMRTTQTDPGA
TQLVFGEDLTTYGLDLAAQGDIYVHFNGPLTREPPDRNSMDCALEMGMRA
MRDSIINEPPKAPCWDPFEPETQDLGLVGSLEPDEFTKSDPDTETDPPPT
TDLTEDPETDRDDNQYRASFLDH

BO17524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6576-PA 267 CG6576-PA 1..267 1..267 1414 100 Plus
Rga-PC 579 CG2161-PC 368..450 102..184 190 43.4 Plus
Rga-PB 579 CG2161-PB 368..450 102..184 190 43.4 Plus
Rga-PA 585 CG2161-PA 374..456 102..184 190 43.4 Plus