Clone Sequence Records
BO17525.3prime Sequence
655 bp (633 high quality bases) assembled on 2006-10-13
> BO17525.3prime
ATGGTCTAGAAAGCTTGCCCATTTGGGAGCCCAGATGACAAAGTAAAAGG
CCGCAAAGAACAACAGAAAGTGCAGATAGATGTTGACGGCGCAAATAACG
AATTCGTAATCGGGCAGCTGGAATCGCCTGGAATGAACCACCTGAGCATG
GTAAACGGATGCGGGTATTAGCAAAGTGGCCAATAACGTGAAGTACACCA
ACTGGTAGATCCAATTGTCTGTGAAGATATACATGGTCATCACAAAGATT
GAGGACATCACGAAAATGACGAGCAGGAGGAACATGGTCCTCTCTCCGGG
GAGGATGATCTTGGGTATCCATGCGCCAGCGAAATAGCATATCACAGTCA
TGGCGGAGGCCACCAGAAGGGCAATGCACACGCGGGAAAGGTTCCGCTCC
AGGAGAAGCAGAATAACGCCCAAACCTGCCAGACTTACAAACAACCCGGC
CATGATGAAACTATACCAATAAAAACTCCGCAACTTGGTCAAAATACAGA
AGACAAAGAGAAACATTAGGGACACCATTGCACTTATGAATCCTGCCATT
ATAAGATCTGCCTCCGGAGGAATTACCTTGGACAGGATTATGGCAAGGAT
CGCAGTTGTAGTCGAAAACAATCCAGCCATCATGTAGCAGCGCCGCACAA
TATTA
BO17525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-PA | 873 | CG32986-RA | 239..870 | 650..19 | 3160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-RA | 968 | CG32986-RA | 264..901 | 655..19 | 3165 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8863045..8863676 | 650..19 | 3160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:57:16 has no hits.
BO17525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:00 Download gff for
BO17525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-PA | 234..873 | 16..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:37 Download gff for
BO17525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 265..909 | 11..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:42 Download gff for
BO17525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 265..909 | 11..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:42 Download gff for
BO17525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8863040..8863684 | 11..654 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:37 Download gff for
BO17525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8863040..8863684 | 11..654 | 99 | | Minus |
BO17525.5prime Sequence
694 bp (608 high quality bases) assembled on 2006-10-13
> BO17525.5prime
GAAGTTATCAGTCGACATGTTAGGAGGCAGTTTAAGAAATGACTGGGTCA
TCTATCCACCAGCCCTCCAGCTTCTCAACTTTCCTTTGCCACAGCAGCAA
GAGCAGGCTCCTGGAACTTTGGTTCGATACGAGCATCCTTCGATACACCA
GCTTCGCTTAGCACCCCGTAGATTAAGGGCACGACGTTCGGTTGTGGAAG
GCGAAGGCTCCAGAGGACTGGACAACGGAAATGGCGACTCGTCGAAAATA
ATATTTGTGCGGCGCTGCTACATGATGGCTGGATTGTTTTCGACTACAAC
TGCGATCCTTGCCATAATCCTGTCCAAGGTAATTCCTCCGGAGGCAGATC
TTATAATGGCAGGATTCATAAGTGCAATGGTGTCCCTAATGTTTCTCTTT
GTCTTCTGTATTTTGACCAAGTTGCGGAGTTTTTATTGGTATAGTTTCAT
CATGGCCGGGTTGTTTGTAAGTCTGGCAGGTTTGGGCGTTATTCTGCTTC
TCCTGGAGCGGAACCTTTCCCGCGTGTGCATTGCCCTTCTGGTGGCCTCC
GCCATGACTGTGATATGCTATTTCGCTGGCGCATGGATACCCAAGATCAT
CCTCCCCGGAGAGAGGACCATGTTCCTCCTGCTCGTCATTTTCGTGATGT
CCTCAATCTTTGTGATGACCATGTATATCTTCACAGACAATTGG
BO17525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-PA | 873 | CG32986-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-RA | 968 | CG32986-RA | 32..709 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8862807..8863484 | 17..694 | 3390 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:09:28 has no hits.
BO17525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:01 Download gff for
BO17525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:41 Download gff for
BO17525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 32..709 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:53 Download gff for
BO17525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 32..709 | 17..694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:53 Download gff for
BO17525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8862807..8863484 | 17..694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:41 Download gff for
BO17525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8862807..8863484 | 17..694 | 100 | | Plus |
BO17525.complete Sequence
904 bp assembled on 2006-10-11
GenBank Submission: FJ634160
> BO17525.complete
GAAGTTATCAGTCGACATGTTAGGAGGCAGTTTAAGAAATGACTGGGTCA
TCTATCCACCAGCCCTCCAGCTTCTCAACTTTCCTTTGCCACAGCAGCAA
GAGCAGGCTCCTGGAACTTTGGTTCGATACGAGCATCCTTCGATACACCA
GCTTCGCTTAGCACCCCGTAGATTAAGGGCACGACGTTCGGTTGTGGAAG
GCGAAGGCTCCAGAGGACTGGACAACGGAAATGGCGACTCGTCGAAAATA
ATATTTGTGCGGCGCTGCTACATGATGGCTGGATTGTTTTCGACTACAAC
TGCGATCCTTGCCATAATCCTGTCCAAGGTAATTCCTCCGGAGGCAGATC
TTATAATGGCAGGATTCATAAGTGCAATGGTGTCCCTAATGTTTCTCTTT
GTCTTCTGTATTTTGACCAAGTTGCGGAGTTTTTATTGGTATAGTTTCAT
CATGGCCGGGTTGTTTGTAAGTCTGGCAGGTTTGGGCGTTATTCTGCTTC
TCCTGGAGCGGAACCTTTCCCGCGTGTGCATTGCCCTTCTGGTGGCCTCC
GCCATGACTGTGATATGCTATTTCGCTGGCGCATGGATACCCAAGATCAT
CCTCCCCGGAGAGAGGACCATGTTCCTCCTGCTCGTCATTTTCGTGATGT
CCTCAATCTTTGTGATGACCATGTATATCTTCACAGACAATTGGATCTAC
CAGTTGGTGTACTTCACGTTATTGGCCACTTTGCTAATACCCGCATCCGT
TTACCATGCTCAGGTGGTTCATTCCAGGCGATTCCAGCTGCCCGATTACG
AATTCGTTATTTGCGCCGTCAACATCTATCTGCACTTTCTGTTGTTCTTT
GCGGCCTTTTACTTTGTCATCTGGGCTCCCAAATGGGCAAGCTTTCTAGA
CCAT
BO17525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-RA | 873 | CG32986-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-RA | 968 | CG32986-RA | 32..901 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8862807..8863676 | 17..886 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:04 has no hits.
BO17525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:19 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:48 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:41 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 37..901 | 22..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:19 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:41 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32986-RA | 37..901 | 22..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:41 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8862812..8863676 | 22..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:41 Download gff for
BO17525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8862812..8863676 | 22..888 | 99 | | Plus |
BO17525.pep Sequence
Translation from 16 to 904
> BO17525.pep
MLGGSLRNDWVIYPPALQLLNFPLPQQQEQAPGTLVRYEHPSIHQLRLAP
RRLRARRSVVEGEGSRGLDNGNGDSSKIIFVRRCYMMAGLFSTTTAILAI
ILSKVIPPEADLIMAGFISAMVSLMFLFVFCILTKLRSFYWYSFIMAGLF
VSLAGLGVILLLLERNLSRVCIALLVASAMTVICYFAGAWIPKIILPGER
TMFLLLVIFVMSSIFVMTMYIFTDNWIYQLVYFTLLATLLIPASVYHAQV
VHSRRFQLPDYEFVICAVNIYLHFLLFFAAFYFVIWAPKWASFLDH
BO17525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32986-PA | 290 | CG32986-PA | 1..290 | 1..290 | 1492 | 100 | Plus |
