Clone Sequence Records
BO17526.3prime Sequence
765 bp (672 high quality bases) assembled on 2006-10-13
> BO17526.3prime
ATGGTCTAGAAAGCTTGCGTTAAGCTGGTAGTAGGCGCCGATCGTTTGGT
GGATCCATCCAATGTAAGGGGGTACAGAGGTGTACACCGTTGGCCGATTG
GCATATCCGCACGGCATATAGCTCCAGGATCCGAGGCCCACCAACTCCGC
CGGTCCAGTGATGGGCCAGTAGATCAGGGGAGTGCCTCCGTCTCCGTAGC
AGGTCTTTACCTGAGAGCACACCTGCTGCGCCGTCAGAGGAGCGTCTGCG
GGCAGCAACTCCTTGCAACCCGTGCTATTGAGTAGGGGAGCGAAGGCATA
CTGCAACTCTTTGGAGTACTCGTCGCCATCGGGGTCGGTGAGTCCCCAGC
CATAAGCAGCAGCTGTCTTATTGCTGTAATCATCATTGATGTCGGGCAGG
GCGATCTGCTGAACTCGAGCGTTGTACTCGAAGCTCTCAGAGACGTGGAG
CAAGGCTATATTGTCACTTCCGGCGTTTCCATTGAAAGACCGATGCGTTG
AGGCGAAGTCGACGTAGCGCACTTGGGCGGCCGTCACGTTCGACCGGTTG
ATGATTCCAGCGTAAACGGGTGTTCCTACGGCATCTCCGTTGAAGGTGCG
CAGTTCATCGACACAATGAGCAGCCGTCAGGAGCCATCGTTTGCCAATGA
TGGATGCCCCGCACAAGTGGGTATAAGTGGCCCTTGTCAAGGACAGGGAC
ACCAGGTAGGGCACATTGTCCACCCCCTGCACATCGTAGCCATCTATAAT
CAGGGGCTGGATCTC
BO17526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-PA | 855 | CG33127-RA | 106..852 | 765..19 | 3710 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-RA | 991 | CG33127-RA | 136..882 | 765..19 | 3720 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 322236..322982 | 765..19 | 3720 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:37:59 has no hits.
BO17526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:02 Download gff for
BO17526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-PA | 106..855 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:07 Download gff for
BO17526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 136..882 | 19..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:21 Download gff for
BO17526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 136..882 | 19..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:21 Download gff for
BO17526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 322236..322982 | 19..765 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:07 Download gff for
BO17526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 322236..322982 | 19..765 | 99 | | Minus |
BO17526.5prime Sequence
746 bp (659 high quality bases) assembled on 2006-10-13
> BO17526.5prime
GAAGTTATCAGTCGACATGTTATCGCCGCTTTTCCTGCTGCCCCTCTTGG
CTTTGGCCGGAGCGGCTAAACTTCCGCACATTCAACACCTGACATTGAGG
GATACAGAACAAGTTCACGCAGAGATCCAGCCCCTGATTATAGATGGCTA
CGATGTGCAGGGGGTGGACAATGTGCCCTACCTGGTGTCCCTGTCCTTGA
CAAGGGCCACCTATACCCACTTGTGCGGGGCATCCATCATTGGCAAACGA
TGGCTCCTGACGGCTGCTCATTGTGTCGATGAACTGCGCACCTTCAACGG
AGATGCCGTAGGAACACCCGTTTACGCTGGAATCATCAACCGGTCGAACG
TGACGGCCGCCCAAGTGCGCTACGTCGACTTCGCCTCAACGCATCGGTCT
TTCAATGGAAACGCCGGAAGTGACAATATAGCCTTGCTCCACGTCTCTGA
GAGCTTCGAGTACAACGCTCGAGTTCAGCAGATCGCCCTGCCCGACATCA
ATGATGATTACAGCAATAAGACAGCTGCTGCTTATGGCTGGGGACTCACC
GACCCCGATGGCGACGAGTACTCCAAAGAGTTGCAGTATGCCTTCGCTCC
CCTACTCAATAGCACGGGTTGCAAGGAGTTGCTGCCCGCAGACGCTCCTC
TGACGGCGCAGCAGGTGTGCTCTCAGGTAAAGACCTGCTACGGAGACGGA
GGCACTCCCCTGATCTACTGGCCCATCACTGGACCGGCGGAGTTTG
BO17526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-PA | 855 | CG33127-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-RA | 991 | CG33127-RA | 31..758 | 17..744 | 3640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 322131..322858 | 17..744 | 3640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:50 has no hits.
BO17526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:03 Download gff for
BO17526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-PA | 1..729 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:44 Download gff for
BO17526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 23..759 | 6..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:20 Download gff for
BO17526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 23..759 | 6..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:20 Download gff for
BO17526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 322123..322859 | 6..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:44 Download gff for
BO17526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 322123..322859 | 6..746 | 99 | | Plus |
BO17526.complete Sequence
886 bp assembled on 2006-10-11
GenBank Submission: FJ634161
> BO17526.complete
GAAGTTATCAGTCGACATGTTATCGCCGCTTTTCCTGCTGCCCCTCTTGG
CTTTGGCCGGAGCGGCTAAACTTCCGCACATTCAACACCTGACATTGAGG
GATACAGAACAAGTTCACGCAGAGATCCAGCCCCTGATTATAGATGGCTA
CGATGTGCAGGGGGTGGACAATGTGCCCTACCTGGTGTCCCTGTCCTTGA
CAAGGGCCACCTATACCCACTTGTGCGGGGCATCCATCATTGGCAAACGA
TGGCTCCTGACGGCTGCTCATTGTGTCGATGAACTGCGCACCTTCAACGG
AGATGCCGTAGGAACACCCGTTTACGCTGGAATCATCAACCGGTCGAACG
TGACGGCCGCCCAAGTGCGCTACGTCGACTTCGCCTCAACGCATCGGTCT
TTCAATGGAAACGCCGGAAGTGACAATATAGCCTTGCTCCACGTCTCTGA
GAGCTTCGAGTACAACGCTCGAGTTCAGCAGATCGCCCTGCCCGACATCA
ATGATGATTACAGCAATAAGACAGCTGCTGCTTATGGCTGGGGACTCACC
GACCCCGATGGCGACGAGTACTCCAAAGAGTTGCAGTATGCCTTCGCTCC
CCTACTCAATAGCACGGGTTGCAAGGAGTTGCTGCCCGCAGACGCTCCTC
TGACGGCGCAGCAGGTGTGCTCTCAGGTAAAGACCTGCTACGGAGACGGA
GGCACTCCCCTGATCTACTGGCCCATCACTGGACCGGCGGAGTTGGTGGG
CCTCGGATCCTGGAGCTATATGCCGTGCGGATATGCCAATCGGCCAACGG
TGTACACCTCTGTACCCCCTTACATTGGATGGATCCACCAAACGATCGGC
GCCTACTACCAGCTTAACGCAAGCTTTCTAGACCAT
BO17526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-RA | 855 | CG33127-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-RA | 991 | CG33127-RA | 31..882 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 322131..322982 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:31:18 has no hits.
BO17526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:29 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:02 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:49 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 36..882 | 22..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:29 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:23 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33127-RA | 36..882 | 22..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:23 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 322136..322982 | 22..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:49 Download gff for
BO17526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 322136..322982 | 22..870 | 99 | | Plus |
BO17526.pep Sequence
Translation from 16 to 886
> BO17526.pep
MLSPLFLLPLLALAGAAKLPHIQHLTLRDTEQVHAEIQPLIIDGYDVQGV
DNVPYLVSLSLTRATYTHLCGASIIGKRWLLTAAHCVDELRTFNGDAVGT
PVYAGIINRSNVTAAQVRYVDFASTHRSFNGNAGSDNIALLHVSESFEYN
ARVQQIALPDINDDYSNKTAAAYGWGLTDPDGDEYSKELQYAFAPLLNST
GCKELLPADAPLTAQQVCSQVKTCYGDGGTPLIYWPITGPAELVGLGSWS
YMPCGYANRPTVYTSVPPYIGWIHQTIGAYYQLNASFLDH
BO17526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33127-PA | 284 | CG33127-PA | 1..284 | 1..284 | 1516 | 100 | Plus |
CG11911-PA | 277 | CG11911-PA | 26..276 | 35..283 | 451 | 37.8 | Plus |
yip7-PA | 270 | CG6457-PA | 3..269 | 5..278 | 281 | 30.7 | Plus |
CG7142-PA | 334 | CG7142-PA | 90..327 | 52..277 | 260 | 28 | Plus |
CG10472-PA | 290 | CG10472-PA | 36..284 | 32..278 | 256 | 29.7 | Plus |