Clone BO17526 Report

Search the DGRC for BO17526

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG33127-RA
Protein status:BO17526.pep: validated full length
Sequenced Size:886

Clone Sequence Records

BO17526.3prime Sequence

765 bp (672 high quality bases) assembled on 2006-10-13

> BO17526.3prime
ATGGTCTAGAAAGCTTGCGTTAAGCTGGTAGTAGGCGCCGATCGTTTGGT
GGATCCATCCAATGTAAGGGGGTACAGAGGTGTACACCGTTGGCCGATTG
GCATATCCGCACGGCATATAGCTCCAGGATCCGAGGCCCACCAACTCCGC
CGGTCCAGTGATGGGCCAGTAGATCAGGGGAGTGCCTCCGTCTCCGTAGC
AGGTCTTTACCTGAGAGCACACCTGCTGCGCCGTCAGAGGAGCGTCTGCG
GGCAGCAACTCCTTGCAACCCGTGCTATTGAGTAGGGGAGCGAAGGCATA
CTGCAACTCTTTGGAGTACTCGTCGCCATCGGGGTCGGTGAGTCCCCAGC
CATAAGCAGCAGCTGTCTTATTGCTGTAATCATCATTGATGTCGGGCAGG
GCGATCTGCTGAACTCGAGCGTTGTACTCGAAGCTCTCAGAGACGTGGAG
CAAGGCTATATTGTCACTTCCGGCGTTTCCATTGAAAGACCGATGCGTTG
AGGCGAAGTCGACGTAGCGCACTTGGGCGGCCGTCACGTTCGACCGGTTG
ATGATTCCAGCGTAAACGGGTGTTCCTACGGCATCTCCGTTGAAGGTGCG
CAGTTCATCGACACAATGAGCAGCCGTCAGGAGCCATCGTTTGCCAATGA
TGGATGCCCCGCACAAGTGGGTATAAGTGGCCCTTGTCAAGGACAGGGAC
ACCAGGTAGGGCACATTGTCCACCCCCTGCACATCGTAGCCATCTATAAT
CAGGGGCTGGATCTC

BO17526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-PA 855 CG33127-RA 106..852 765..19 3710 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-RA 991 CG33127-RA 136..882 765..19 3720 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 322236..322982 765..19 3720 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 17:37:59 has no hits.

BO17526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:02 Download gff for BO17526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-PA 106..855 16..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:07 Download gff for BO17526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 136..882 19..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:21 Download gff for BO17526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 136..882 19..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:21 Download gff for BO17526.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 322236..322982 19..765 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:07 Download gff for BO17526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 322236..322982 19..765 99   Minus

BO17526.5prime Sequence

746 bp (659 high quality bases) assembled on 2006-10-13

> BO17526.5prime
GAAGTTATCAGTCGACATGTTATCGCCGCTTTTCCTGCTGCCCCTCTTGG
CTTTGGCCGGAGCGGCTAAACTTCCGCACATTCAACACCTGACATTGAGG
GATACAGAACAAGTTCACGCAGAGATCCAGCCCCTGATTATAGATGGCTA
CGATGTGCAGGGGGTGGACAATGTGCCCTACCTGGTGTCCCTGTCCTTGA
CAAGGGCCACCTATACCCACTTGTGCGGGGCATCCATCATTGGCAAACGA
TGGCTCCTGACGGCTGCTCATTGTGTCGATGAACTGCGCACCTTCAACGG
AGATGCCGTAGGAACACCCGTTTACGCTGGAATCATCAACCGGTCGAACG
TGACGGCCGCCCAAGTGCGCTACGTCGACTTCGCCTCAACGCATCGGTCT
TTCAATGGAAACGCCGGAAGTGACAATATAGCCTTGCTCCACGTCTCTGA
GAGCTTCGAGTACAACGCTCGAGTTCAGCAGATCGCCCTGCCCGACATCA
ATGATGATTACAGCAATAAGACAGCTGCTGCTTATGGCTGGGGACTCACC
GACCCCGATGGCGACGAGTACTCCAAAGAGTTGCAGTATGCCTTCGCTCC
CCTACTCAATAGCACGGGTTGCAAGGAGTTGCTGCCCGCAGACGCTCCTC
TGACGGCGCAGCAGGTGTGCTCTCAGGTAAAGACCTGCTACGGAGACGGA
GGCACTCCCCTGATCTACTGGCCCATCACTGGACCGGCGGAGTTTG

BO17526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-PA 855 CG33127-RA 1..728 17..744 3640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-RA 991 CG33127-RA 31..758 17..744 3640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 322131..322858 17..744 3640 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:50 has no hits.

BO17526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:03 Download gff for BO17526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-PA 1..729 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:44 Download gff for BO17526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 23..759 6..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:20 Download gff for BO17526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 23..759 6..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:20 Download gff for BO17526.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 322123..322859 6..746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:44 Download gff for BO17526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 322123..322859 6..746 99   Plus

BO17526.complete Sequence

886 bp assembled on 2006-10-11

GenBank Submission: FJ634161

> BO17526.complete
GAAGTTATCAGTCGACATGTTATCGCCGCTTTTCCTGCTGCCCCTCTTGG
CTTTGGCCGGAGCGGCTAAACTTCCGCACATTCAACACCTGACATTGAGG
GATACAGAACAAGTTCACGCAGAGATCCAGCCCCTGATTATAGATGGCTA
CGATGTGCAGGGGGTGGACAATGTGCCCTACCTGGTGTCCCTGTCCTTGA
CAAGGGCCACCTATACCCACTTGTGCGGGGCATCCATCATTGGCAAACGA
TGGCTCCTGACGGCTGCTCATTGTGTCGATGAACTGCGCACCTTCAACGG
AGATGCCGTAGGAACACCCGTTTACGCTGGAATCATCAACCGGTCGAACG
TGACGGCCGCCCAAGTGCGCTACGTCGACTTCGCCTCAACGCATCGGTCT
TTCAATGGAAACGCCGGAAGTGACAATATAGCCTTGCTCCACGTCTCTGA
GAGCTTCGAGTACAACGCTCGAGTTCAGCAGATCGCCCTGCCCGACATCA
ATGATGATTACAGCAATAAGACAGCTGCTGCTTATGGCTGGGGACTCACC
GACCCCGATGGCGACGAGTACTCCAAAGAGTTGCAGTATGCCTTCGCTCC
CCTACTCAATAGCACGGGTTGCAAGGAGTTGCTGCCCGCAGACGCTCCTC
TGACGGCGCAGCAGGTGTGCTCTCAGGTAAAGACCTGCTACGGAGACGGA
GGCACTCCCCTGATCTACTGGCCCATCACTGGACCGGCGGAGTTGGTGGG
CCTCGGATCCTGGAGCTATATGCCGTGCGGATATGCCAATCGGCCAACGG
TGTACACCTCTGTACCCCCTTACATTGGATGGATCCACCAAACGATCGGC
GCCTACTACCAGCTTAACGCAAGCTTTCTAGACCAT

BO17526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-RA 855 CG33127-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-RA 991 CG33127-RA 31..882 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 322131..322982 17..868 4260 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:31:18 has no hits.

BO17526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:29 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:02 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:49 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 36..882 22..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:29 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:23 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
CG33127-RA 36..882 22..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:23 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
2L 322136..322982 22..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:49 Download gff for BO17526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 322136..322982 22..870 99   Plus

BO17526.pep Sequence

Translation from 16 to 886

> BO17526.pep
MLSPLFLLPLLALAGAAKLPHIQHLTLRDTEQVHAEIQPLIIDGYDVQGV
DNVPYLVSLSLTRATYTHLCGASIIGKRWLLTAAHCVDELRTFNGDAVGT
PVYAGIINRSNVTAAQVRYVDFASTHRSFNGNAGSDNIALLHVSESFEYN
ARVQQIALPDINDDYSNKTAAAYGWGLTDPDGDEYSKELQYAFAPLLNST
GCKELLPADAPLTAQQVCSQVKTCYGDGGTPLIYWPITGPAELVGLGSWS
YMPCGYANRPTVYTSVPPYIGWIHQTIGAYYQLNASFLDH

BO17526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33127-PA 284 CG33127-PA 1..284 1..284 1516 100 Plus
CG11911-PA 277 CG11911-PA 26..276 35..283 451 37.8 Plus
yip7-PA 270 CG6457-PA 3..269 5..278 281 30.7 Plus
CG7142-PA 334 CG7142-PA 90..327 52..277 260 28 Plus
CG10472-PA 290 CG10472-PA 36..284 32..278 256 29.7 Plus