Clone Sequence Records
BO17530.3prime Sequence
750 bp (693 high quality bases) assembled on 2006-10-13
> BO17530.3prime
ATGGTCTAGAAAGCTTGCCTTTGGGTCTTCAGCGGCTAGGAACAGATCAT
CATAGGGTACTTTTTCGAATAAATCCTCAAATAGACTTAAAAAGACGGTT
TCGAACAAACGCAGAATACCCGGCTCCAGTTCGTTCCAGAACTCCACCCA
ATTCCGGTTGAACAGATTGTTAACTGCAATCGTTAGGTCTTCATTGTCGG
GAAAGAAGTTGTCTAGCCACATAATCCAGCGGTCCAGCCTTATATTAGGA
ACTAGCTCGTAGATCTTTAAATATCTCTTGTTGTTTCTGTACTCGACGCG
CACTTTCAGCGTAAGAACGAATTGAAAATTGAGGAAATCCGACTCCGACG
TTCCCTGAGAGTGGATATCGACGAACCAGAGCATCCGTCCCTTGGCCACA
TAGTCGCCCTTGTAAACCAGCCGGGGAATCTTGCCGTGAATTTCGATCTT
GGTGGTGGTGGGATCCTTGTCGAATCCCCTGATCTCCGTGATCGTGGTGT
TCTCGAAGCCATAGTTGATCTGATTGATCAGATTGAAGTAGTACCAGGCA
CCTCCCACCTGGGAATCGTTGACCAGCAGCCAATCCCGCACGGACAGCAC
ATTGAAGGGTTTCAGATCGACCTCGGGAATGCCCTTTGGAAAATCTCTCA
GCAGTGCATTTGCCGACTCTACCAGGCACTTTCCGTCACCGAAGTGGGAT
TTTTTCACCTTGGCAGGCAACTTCTGGCACTGCAGTCCACCGAACAGCTG
BO17530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-PA | 768 | CG7079-RA | 34..765 | 750..19 | 3635 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-RB | 1237 | CG7079-RB | 137..868 | 750..19 | 3645 | 99.9 | Minus |
CG7079-RA | 934 | CG7079-RA | 137..868 | 750..19 | 3645 | 99.9 | Minus |
CG31207-RA | 835 | CG31207-RA | 289..395 | 539..433 | 205 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21048112..21048598 | 230..716 | 2420 | 99.8 | Plus |
3R | 32079331 | 3R | 21047831..21048042 | 19..230 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 21046536..21046642 | 433..539 | 205 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:58 has no hits.
BO17530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:09 Download gff for
BO17530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-PA | 34..768 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:46 Download gff for
BO17530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 129..867 | 11..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:36 Download gff for
BO17530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 137..875 | 11..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:36 Download gff for
BO17530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21047824..21048041 | 11..229 | 98 | <- | Plus |
3R | 21048112..21048598 | 230..716 | 99 | <- | Plus |
3R | 21048660..21048693 | 717..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:46 Download gff for
BO17530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16873546..16873763 | 11..229 | 98 | <- | Plus |
arm_3R | 16873834..16874320 | 230..716 | 99 | <- | Plus |
arm_3R | 16874382..16874415 | 717..750 | 100 | | Plus |
BO17530.5prime Sequence
725 bp (712 high quality bases) assembled on 2006-10-13
> BO17530.5prime
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGG
BO17530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-PA | 768 | CG7079-RA | 1..709 | 17..725 | 3545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-RB | 1237 | CG7079-RB | 104..812 | 17..725 | 3545 | 100 | Plus |
CG7079-RA | 934 | CG7079-RA | 104..812 | 17..725 | 3545 | 100 | Plus |
CG31207-RA | 835 | CG31207-RA | 289..395 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21048112..21048598 | 570..84 | 2435 | 100 | Minus |
3R | 32079331 | 3R | 21047887..21048042 | 725..570 | 780 | 100 | Minus |
3R | 32079331 | 3R | 21048660..21048726 | 83..17 | 335 | 100 | Minus |
3R | 32079331 | 3R | 21046536..21046642 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:23:24 has no hits.
BO17530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:09 Download gff for
BO17530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-PA | 1..709 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:53 Download gff for
BO17530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 85..804 | 5..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:43 Download gff for
BO17530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 93..812 | 5..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:43 Download gff for
BO17530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21047887..21048041 | 571..725 | 100 | <- | Minus |
3R | 21048112..21048598 | 84..570 | 100 | <- | Minus |
3R | 21048660..21048737 | 5..83 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:53 Download gff for
BO17530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16873609..16873763 | 571..725 | 100 | <- | Minus |
arm_3R | 16873834..16874320 | 84..570 | 100 | <- | Minus |
arm_3R | 16874382..16874459 | 5..83 | 93 | | Minus |
BO17530.complete Sequence
799 bp assembled on 2006-10-11
GenBank Submission: FJ634162
> BO17530.complete
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGGATTTATTCGAAAAAGTACCCTATGA
TGATCTGTTCCTAGCCGCTGAAGACCCAAAGGCAAGCTTTCTAGACCAT
BO17530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-RB | 768 | CG7079-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
CG7079-RA | 768 | CG7079-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG31207-RA | 777 | CG31207-PA | 245..351 | 261..367 | 205 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-RB | 1237 | CG7079-RB | 104..868 | 17..781 | 3825 | 100 | Plus |
CG7079-RA | 934 | CG7079-RA | 104..868 | 17..781 | 3825 | 100 | Plus |
CG31207-RA | 835 | CG31207-RA | 289..395 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21048112..21048598 | 570..84 | 2435 | 100 | Minus |
3R | 32079331 | 3R | 21047831..21048042 | 781..570 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 21048660..21048726 | 83..17 | 335 | 100 | Minus |
3R | 32079331 | 3R | 21046536..21046642 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:56 has no hits.
BO17530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:39 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:15 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:14 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 96..860 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:40 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:35 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7079-RA | 104..868 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:35 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21047829..21048041 | 571..783 | 99 | <- | Minus |
3R | 21048112..21048598 | 84..570 | 100 | <- | Minus |
3R | 21048660..21048726 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:14 Download gff for
BO17530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16873551..16873763 | 571..783 | 99 | <- | Minus |
arm_3R | 16873834..16874320 | 84..570 | 100 | <- | Minus |
arm_3R | 16874382..16874448 | 17..83 | 100 | | Minus |
BO17530.pep Sequence
Translation from 16 to 799
> BO17530.pep
MHFLAYVIITIQLFGGLQCQKLPAKVKKCHFGDGKCLVESANALLRDFPK
GIPEVDLKPFNVLSVRDWLLVNDSQVGGAWYYFNLINQINYGFENTTITE
IRGFDKDPTTTKIEIHGKIPRLVYKGDYVAKGRMLWFVDIHSQGTSESDF
LNFQFVLTLKVRVEYRNNKRYLKIYELVPNIRLDRWIMWLDNFFPDNEDL
TIAVNNLFNRNWVEFWNELEPGILRLFETVFLSLFEDLFEKVPYDDLFLA
AEDPKASFLDH
BO17530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7079-PB | 255 | CG7079-PB | 1..255 | 1..255 | 1371 | 100 | Plus |
CG7079-PA | 255 | CG7079-PA | 1..255 | 1..255 | 1371 | 100 | Plus |
CG31207-PA | 258 | CG31207-PA | 7..248 | 7..249 | 824 | 59.3 | Plus |
CG31189-PB | 258 | CG31189-PB | 23..253 | 22..253 | 597 | 47 | Plus |
CG11852-PA | 250 | CG11852-PA | 23..248 | 23..249 | 291 | 29.6 | Plus |