Clone BO17530 Report

Search the DGRC for BO17530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG7079-RA
Protein status:BO17530.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO17530.3prime Sequence

750 bp (693 high quality bases) assembled on 2006-10-13

> BO17530.3prime
ATGGTCTAGAAAGCTTGCCTTTGGGTCTTCAGCGGCTAGGAACAGATCAT
CATAGGGTACTTTTTCGAATAAATCCTCAAATAGACTTAAAAAGACGGTT
TCGAACAAACGCAGAATACCCGGCTCCAGTTCGTTCCAGAACTCCACCCA
ATTCCGGTTGAACAGATTGTTAACTGCAATCGTTAGGTCTTCATTGTCGG
GAAAGAAGTTGTCTAGCCACATAATCCAGCGGTCCAGCCTTATATTAGGA
ACTAGCTCGTAGATCTTTAAATATCTCTTGTTGTTTCTGTACTCGACGCG
CACTTTCAGCGTAAGAACGAATTGAAAATTGAGGAAATCCGACTCCGACG
TTCCCTGAGAGTGGATATCGACGAACCAGAGCATCCGTCCCTTGGCCACA
TAGTCGCCCTTGTAAACCAGCCGGGGAATCTTGCCGTGAATTTCGATCTT
GGTGGTGGTGGGATCCTTGTCGAATCCCCTGATCTCCGTGATCGTGGTGT
TCTCGAAGCCATAGTTGATCTGATTGATCAGATTGAAGTAGTACCAGGCA
CCTCCCACCTGGGAATCGTTGACCAGCAGCCAATCCCGCACGGACAGCAC
ATTGAAGGGTTTCAGATCGACCTCGGGAATGCCCTTTGGAAAATCTCTCA
GCAGTGCATTTGCCGACTCTACCAGGCACTTTCCGTCACCGAAGTGGGAT
TTTTTCACCTTGGCAGGCAACTTCTGGCACTGCAGTCCACCGAACAGCTG

BO17530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-PA 768 CG7079-RA 34..765 750..19 3635 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-RB 1237 CG7079-RB 137..868 750..19 3645 99.9 Minus
CG7079-RA 934 CG7079-RA 137..868 750..19 3645 99.9 Minus
CG31207-RA 835 CG31207-RA 289..395 539..433 205 79.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21048112..21048598 230..716 2420 99.8 Plus
3R 32079331 3R 21047831..21048042 19..230 1060 100 Plus
3R 32079331 3R 21046536..21046642 433..539 205 79.4 Plus
Blast to na_te.dros performed on 2015-02-12 11:24:58 has no hits.

BO17530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:09 Download gff for BO17530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-PA 34..768 15..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:46 Download gff for BO17530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 129..867 11..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:36 Download gff for BO17530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 137..875 11..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:36 Download gff for BO17530.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21047824..21048041 11..229 98 <- Plus
3R 21048112..21048598 230..716 99 <- Plus
3R 21048660..21048693 717..750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:46 Download gff for BO17530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16873546..16873763 11..229 98 <- Plus
arm_3R 16873834..16874320 230..716 99 <- Plus
arm_3R 16874382..16874415 717..750 100   Plus

BO17530.5prime Sequence

725 bp (712 high quality bases) assembled on 2006-10-13

> BO17530.5prime
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGG

BO17530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-PA 768 CG7079-RA 1..709 17..725 3545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-RB 1237 CG7079-RB 104..812 17..725 3545 100 Plus
CG7079-RA 934 CG7079-RA 104..812 17..725 3545 100 Plus
CG31207-RA 835 CG31207-RA 289..395 261..367 205 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21048112..21048598 570..84 2435 100 Minus
3R 32079331 3R 21047887..21048042 725..570 780 100 Minus
3R 32079331 3R 21048660..21048726 83..17 335 100 Minus
3R 32079331 3R 21046536..21046642 367..261 205 79.4 Minus
Blast to na_te.dros performed on 2015-01-31 10:23:24 has no hits.

BO17530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:09 Download gff for BO17530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-PA 1..709 17..725 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:53 Download gff for BO17530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 85..804 5..725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:43 Download gff for BO17530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 93..812 5..725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:43 Download gff for BO17530.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21047887..21048041 571..725 100 <- Minus
3R 21048112..21048598 84..570 100 <- Minus
3R 21048660..21048737 5..83 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:53 Download gff for BO17530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16873609..16873763 571..725 100 <- Minus
arm_3R 16873834..16874320 84..570 100 <- Minus
arm_3R 16874382..16874459 5..83 93   Minus

BO17530.complete Sequence

799 bp assembled on 2006-10-11

GenBank Submission: FJ634162

> BO17530.complete
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGGATTTATTCGAAAAAGTACCCTATGA
TGATCTGTTCCTAGCCGCTGAAGACCCAAAGGCAAGCTTTCTAGACCAT

BO17530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-RB 768 CG7079-PB 1..765 17..781 3825 100 Plus
CG7079-RA 768 CG7079-PA 1..765 17..781 3825 100 Plus
CG31207-RA 777 CG31207-PA 245..351 261..367 205 79.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-RB 1237 CG7079-RB 104..868 17..781 3825 100 Plus
CG7079-RA 934 CG7079-RA 104..868 17..781 3825 100 Plus
CG31207-RA 835 CG31207-RA 289..395 261..367 205 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21048112..21048598 570..84 2435 100 Minus
3R 32079331 3R 21047831..21048042 781..570 1060 100 Minus
3R 32079331 3R 21048660..21048726 83..17 335 100 Minus
3R 32079331 3R 21046536..21046642 367..261 205 79.4 Minus
Blast to na_te.dros performed on 2014-11-27 14:43:56 has no hits.

BO17530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:39 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:15 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:14 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 96..860 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:40 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:35 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
CG7079-RA 104..868 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:35 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21047829..21048041 571..783 99 <- Minus
3R 21048112..21048598 84..570 100 <- Minus
3R 21048660..21048726 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:14 Download gff for BO17530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16873551..16873763 571..783 99 <- Minus
arm_3R 16873834..16874320 84..570 100 <- Minus
arm_3R 16874382..16874448 17..83 100   Minus

BO17530.pep Sequence

Translation from 16 to 799

> BO17530.pep
MHFLAYVIITIQLFGGLQCQKLPAKVKKCHFGDGKCLVESANALLRDFPK
GIPEVDLKPFNVLSVRDWLLVNDSQVGGAWYYFNLINQINYGFENTTITE
IRGFDKDPTTTKIEIHGKIPRLVYKGDYVAKGRMLWFVDIHSQGTSESDF
LNFQFVLTLKVRVEYRNNKRYLKIYELVPNIRLDRWIMWLDNFFPDNEDL
TIAVNNLFNRNWVEFWNELEPGILRLFETVFLSLFEDLFEKVPYDDLFLA
AEDPKASFLDH

BO17530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7079-PB 255 CG7079-PB 1..255 1..255 1371 100 Plus
CG7079-PA 255 CG7079-PA 1..255 1..255 1371 100 Plus
CG31207-PA 258 CG31207-PA 7..248 7..249 824 59.3 Plus
CG31189-PB 258 CG31189-PB 23..253 22..253 597 47 Plus
CG11852-PA 250 CG11852-PA 23..248 23..249 291 29.6 Plus