Clone Sequence Records
BO17531.3prime Sequence
724 bp (602 high quality bases) assembled on 2006-10-13
> BO17531.3prime
ATGGTCTAGAAAGCTTGCCTGTGTCCCGCTGGCATTATCGGCATAGACCT
CGTCGGCGCACTGAAAAGCGGCCTGCATCACCGATTCGGGCGTGTCCACA
ACATCGCAATAGTATGTATCCGGTGATGGGATGCAGTGCAGCTGCACCTG
GCTGCCCTCTGCCGTGGCGCGATAGAAGCGACACTGTCGCGGTCCATATG
TTGGCATATCCGCATCGTATGGCGGACTAAGAATGTCGAAGAAAGCGGCT
ACGCCGCTACCAATTTGGGCAATCTGGTGGTAATTTCTCTTTCTAGGAGT
CAATGTGGCACACGGACTAGCCGGCGTGACCAATTTGGGTTCCTCGACAT
TCACCTTCACCACTGTTTGATGGGGGTCATAGGTGAGCGGCTCATCCGGG
CCTAACTGGTGCGAAAAGCTGTCCACCATTAGCTGACCCCAGATGCAGCG
CAGCAGACCGAACATCATGGGGTGATCGTGCAAGGGAATAGTGCTCGCTC
CGCGCACTATAAACAGGCTCATGGAGAAGCGATCATCCTCGAATATATGC
ATGTAGCTGCAGGGTGCCCGATGGCTTCCCACGTTGCGAAAGAGCTCCTC
GCGGAGGTGCAGATCCCGGTAGGTCAGCTCATCCCGTCAATTGACGCAGA
TGCTGCAAATTCGCATTGAAGCTGGCGTGATTTGCCCGGTCGAACGTTTT
GAATGCCTGCCGCAGTACATTGGT
BO17531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-PA | 723 | CG7550-RA | 105..720 | 634..19 | 3080 | 100 | Minus |
| CG7550-PA | 723 | CG7550-RA | 18..106 | 722..634 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-RA | 920 | CG7550-RA | 90..792 | 722..19 | 3495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8123740..8124442 | 19..722 | 3470 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:51:45 has no hits.
BO17531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:11 Download gff for
BO17531.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-PA | 16..723 | 16..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:17 Download gff for
BO17531.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 88..792 | 19..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:05 Download gff for
BO17531.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 88..792 | 19..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:05 Download gff for
BO17531.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8123740..8124444 | 19..724 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:17 Download gff for
BO17531.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8116840..8117544 | 19..724 | 99 | | Plus |
BO17531.5prime Sequence
655 bp (623 high quality bases) assembled on 2006-10-13
> BO17531.5prime
GAAGTTATCAGTCGACATGACGACGCACTTCAGCAATGTACTGCGGCAGG
CATTCAAAACGTTCGACCGGGCAAATCACGCCAGCTTCAATGCGAATTTG
CAGCATCTGCGTCAATTGACGGATGAGCTGACCTACCGGGATCTGCACCT
CCGCGAGGAGCTCTTTCGCAACGTGGGAAGCCATCGGGCACCCTGCAGCT
ACATGCATATATTCGAGGATGATCGCTTCTCCATGAGCCTGTTTATAGTG
CGCGGAGCGAGCACTATTCCCTTGCACGATCACCCCATGATGTTCGGTCT
GCTGCGCTGCATCTGGGGTCAGCTAATGGTGGACAGCTTTTCGCACCAGT
TAGGCCCGGATGAGCCGCTCACCTATGACCCCCATCAAACAGTGGTGAAG
GTGAATGTCGAGGAACCCAAATTGGTCACGCCGGCTAGTCCGTGTGCCAC
ATTGACTCCTAGAAAGAGAAATTACCACCAGATTGCCCAAATTGGTAGCG
GCGTAGCCGCTTTCTTCGACATTCTTAGTCCGCCATACGATGCGGATATG
CCAACATATGGACCGCGACAGTGTCGCTTCTATCGCGCCACGGCAGAGGG
CAGCCAGGTGCAGCTGCACTGCATCCCATCACCGGATACATACTATTGCG
ATGTT
BO17531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-PA | 723 | CG7550-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-RA | 920 | CG7550-RA | 73..711 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8123821..8124459 | 655..17 | 3195 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:09:39 has no hits.
BO17531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:11 Download gff for
BO17531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:43 Download gff for
BO17531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..711 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:56 Download gff for
BO17531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..711 | 17..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:56 Download gff for
BO17531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8123821..8124459 | 17..655 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:43 Download gff for
BO17531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8116921..8117559 | 17..655 | 100 | | Minus |
BO17531.complete Sequence
754 bp assembled on 2006-10-11
GenBank Submission: FJ634163
> BO17531.complete
GAAGTTATCAGTCGACATGACGACGCACTTCAGCAATGTACTGCGGCAGG
CATTCAAAACGTTCGACCGGGCAAATCACGCCAGCTTCAATGCGAATTTG
CAGCATCTGCGTCAATTGACGGATGAGCTGACCTACCGGGATCTGCACCT
CCGCGAGGAGCTCTTTCGCAACGTGGGAAGCCATCGGGCACCCTGCAGCT
ACATGCATATATTCGAGGATGATCGCTTCTCCATGAGCCTGTTTATAGTG
CGCGGAGCGAGCACTATTCCCTTGCACGATCACCCCATGATGTTCGGTCT
GCTGCGCTGCATCTGGGGTCAGCTAATGGTGGACAGCTTTTCGCACCAGT
TAGGCCCGGATGAGCCGCTCACCTATGACCCCCATCAAACAGTGGTGAAG
GTGAATGTCGAGGAACCCAAATTGGTCACGCCGGCTAGTCCGTGTGCCAC
ATTGACTCCTAGAAAGAGAAATTACCACCAGATTGCCCAAATTGGTAGCG
GCGTAGCCGCTTTCTTCGACATTCTTAGTCCGCCATACGATGCGGATATG
CCAACATATGGACCGCGACAGTGTCGCTTCTATCGCGCCACGGCAGAGGG
CAGCCAGGTGCAGCTGCACTGCATCCCATCACCGGATACATACTATTGCG
ATGTTGTGGACACGCCCGAATCGGTGATGCAGGCCGCTTTTCAGTGCGCC
GACGAGGTCTATGCCGATAATGCCAGCGGGACACAGGCAAGCTTTCTAGA
CCAT
BO17531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-RA | 723 | CG7550-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-RA | 920 | CG7550-RA | 73..792 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8123740..8124459 | 736..17 | 3600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:55:06 has no hits.
BO17531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:12 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:18 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..792 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:56 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..792 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:12 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..792 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:39 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7550-RA | 73..792 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:39 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8123737..8124459 | 17..738 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:56 Download gff for
BO17531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8116837..8117559 | 17..738 | 99 | | Minus |
BO17531.pep Sequence
Translation from 16 to 754
> BO17531.pep
MTTHFSNVLRQAFKTFDRANHASFNANLQHLRQLTDELTYRDLHLREELF
RNVGSHRAPCSYMHIFEDDRFSMSLFIVRGASTIPLHDHPMMFGLLRCIW
GQLMVDSFSHQLGPDEPLTYDPHQTVVKVNVEEPKLVTPASPCATLTPRK
RNYHQIAQIGSGVAAFFDILSPPYDADMPTYGPRQCRFYRATAEGSQVQL
HCIPSPDTYYCDVVDTPESVMQAAFQCADEVYADNASGTQASFLDH
BO17531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7550-PA | 240 | CG7550-PA | 1..240 | 1..240 | 1296 | 100 | Plus |
