Clone BO17534 Report

Search the DGRC for BO17534

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG6628-RA
Protein status:BO17534.pep: validated full length
Sequenced Size:865

Clone Sequence Records

BO17534.3prime Sequence

678 bp (595 high quality bases) assembled on 2006-10-13

> BO17534.3prime
ATGGTCTAGAAAGCTTGCCAGCGTCCAAAATCTCTTCCCCTTGGAGCCCT
GCTGCCCGATAAGATCCTGGTATTCCTCACCAGCCTTGCAAAGCGATGGA
TATTTGAGGTCGGAACCGGACTGACAGCCAATGGCTTTCTCCTTGTAGAT
GGGCCAGTCGGGAACATAATTGCTGGCATAGTTGCAGGCCAAAAGGAATA
GCGGATGTCCTGCGGGCTTCTCGAATCTCAAGGCGGCACATCCCACATGG
GTGTTGTTGTCACGGGCCATGACGGCAAAATTGCGAATGGAATCTCCCAA
TTTTCCTTTGGGAAAACGCTGCAATTGCTCTTTTGTGATATTGATACTCT
GATTCCACCAGCCTCCAATAGACTCCTTAACAAGGCACTCGTCGGTGTGA
TTTCCGTCTTCAGGTAGCAGGGTTATGTTGACCAAAGCCAAGTTCTGACC
AGAGTTATGGAAATCTGGAGTGTTGTGACAAGAATCGTGCTGCAGAACAC
ACTGCTTCACATTCAGTGTGGCCAGATCGGCCAGTTCTGAATGCCACTGC
AGTGTGGCCATGCGATCGGGCTTAGGTAAATTGATGATTTTTCCCGAAGC
AAGGACTTTTCGCAATGCATTGTGTTCACCCAGGATCAGGTCCTGCAGGC
CAGTGAGATTGACCAAATGGGCGTCGGG

BO17534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 834 CG6628-RA 172..831 678..19 3275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 175..834 678..19 3285 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166788 293..678 1915 99.7 Plus
3L 28110227 3L 10166071..10166344 19..292 1370 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:47:07 has no hits.

BO17534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:15 Download gff for BO17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-PA 172..834 18..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:32 Download gff for BO17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 175..834 19..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:43 Download gff for BO17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 175..834 19..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:43 Download gff for BO17534.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10166071..10166344 19..292 100 <- Plus
3L 10166403..10166788 293..678 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:32 Download gff for BO17534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159171..10159444 19..292 100 <- Plus
arm_3L 10159503..10159888 293..678 99   Plus

BO17534.5prime Sequence

649 bp (628 high quality bases) assembled on 2006-10-13

> BO17534.5prime
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAG

BO17534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 834 CG6628-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 3..636 16..649 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166809 573..167 2035 100 Minus
3L 28110227 3L 10166870..10167021 167..16 760 100 Minus
3L 28110227 3L 10166269..10166344 649..574 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:50 has no hits.

BO17534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:15 Download gff for BO17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-PA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:58 Download gff for BO17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..636 15..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:16 Download gff for BO17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..636 15..649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:16 Download gff for BO17534.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10166269..10166344 574..649 100 <- Minus
3L 10166403..10166809 167..573 100 <- Minus
3L 10166871..10167030 6..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:58 Download gff for BO17534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159369..10159444 574..649 100 <- Minus
arm_3L 10159503..10159909 167..573 100 <- Minus
arm_3L 10159971..10160130 6..166 98   Minus

BO17534.complete Sequence

865 bp assembled on 2006-10-11

GenBank Submission: FJ634164

> BO17534.complete
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGGCA
AGCTTTCTAGACCAT

BO17534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 834 CG6628-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 3..834 16..847 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166809 573..167 2035 100 Minus
3L 28110227 3L 10166071..10166344 847..574 1370 100 Minus
3L 28110227 3L 10166870..10167021 167..16 760 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:27:09 has no hits.

BO17534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:45 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:23 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..839 14..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:39 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 4..834 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:45 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..839 14..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:05 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 4..834 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:05 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10166069..10166344 574..849 99 <- Minus
3L 10166403..10166809 167..573 100 <- Minus
3L 10166871..10167020 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:39 Download gff for BO17534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159169..10159444 574..849 99 <- Minus
arm_3L 10159503..10159909 167..573 100 <- Minus
arm_3L 10159971..10160120 17..166 100   Minus

BO17534.pep Sequence

Translation from 16 to 865

> BO17534.pep
MSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNKG
ELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMATL
QWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDGN
HTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNNT
HVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLKY
PSLCKAGEEYQDLIGQQGSKGKRFWTLASFLDH

BO17534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 277 CG6628-PA 1..277 1..277 1496 100 Plus
CG9822-PA 263 CG9822-PA 19..256 24..260 435 41.1 Plus
scpr-A-PA 264 CG5207-PA 16..254 24..262 394 38.5 Plus
scpr-B-PA 262 CG17210-PA 20..252 30..262 393 39.5 Plus
scpr-C-PB 262 CG5106-PB 20..252 30..262 390 39.1 Plus