Clone Sequence Records
BO17534.3prime Sequence
678 bp (595 high quality bases) assembled on 2006-10-13
> BO17534.3prime
ATGGTCTAGAAAGCTTGCCAGCGTCCAAAATCTCTTCCCCTTGGAGCCCT
GCTGCCCGATAAGATCCTGGTATTCCTCACCAGCCTTGCAAAGCGATGGA
TATTTGAGGTCGGAACCGGACTGACAGCCAATGGCTTTCTCCTTGTAGAT
GGGCCAGTCGGGAACATAATTGCTGGCATAGTTGCAGGCCAAAAGGAATA
GCGGATGTCCTGCGGGCTTCTCGAATCTCAAGGCGGCACATCCCACATGG
GTGTTGTTGTCACGGGCCATGACGGCAAAATTGCGAATGGAATCTCCCAA
TTTTCCTTTGGGAAAACGCTGCAATTGCTCTTTTGTGATATTGATACTCT
GATTCCACCAGCCTCCAATAGACTCCTTAACAAGGCACTCGTCGGTGTGA
TTTCCGTCTTCAGGTAGCAGGGTTATGTTGACCAAAGCCAAGTTCTGACC
AGAGTTATGGAAATCTGGAGTGTTGTGACAAGAATCGTGCTGCAGAACAC
ACTGCTTCACATTCAGTGTGGCCAGATCGGCCAGTTCTGAATGCCACTGC
AGTGTGGCCATGCGATCGGGCTTAGGTAAATTGATGATTTTTCCCGAAGC
AAGGACTTTTCGCAATGCATTGTGTTCACCCAGGATCAGGTCCTGCAGGC
CAGTGAGATTGACCAAATGGGCGTCGGG
BO17534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 834 | CG6628-RA | 172..831 | 678..19 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 175..834 | 678..19 | 3285 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166788 | 293..678 | 1915 | 99.7 | Plus |
3L | 28110227 | 3L | 10166071..10166344 | 19..292 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:47:07 has no hits.
BO17534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:15 Download gff for
BO17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-PA | 172..834 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:32 Download gff for
BO17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 175..834 | 19..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:43 Download gff for
BO17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 175..834 | 19..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:43 Download gff for
BO17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166071..10166344 | 19..292 | 100 | <- | Plus |
3L | 10166403..10166788 | 293..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:32 Download gff for
BO17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159171..10159444 | 19..292 | 100 | <- | Plus |
arm_3L | 10159503..10159888 | 293..678 | 99 | | Plus |
BO17534.5prime Sequence
649 bp (628 high quality bases) assembled on 2006-10-13
> BO17534.5prime
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAG
BO17534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 834 | CG6628-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 3..636 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166809 | 573..167 | 2035 | 100 | Minus |
3L | 28110227 | 3L | 10166870..10167021 | 167..16 | 760 | 100 | Minus |
3L | 28110227 | 3L | 10166269..10166344 | 649..574 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:50 has no hits.
BO17534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:15 Download gff for
BO17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:58 Download gff for
BO17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..636 | 15..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:16 Download gff for
BO17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..636 | 15..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:16 Download gff for
BO17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166269..10166344 | 574..649 | 100 | <- | Minus |
3L | 10166403..10166809 | 167..573 | 100 | <- | Minus |
3L | 10166871..10167030 | 6..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:58 Download gff for
BO17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159369..10159444 | 574..649 | 100 | <- | Minus |
arm_3L | 10159503..10159909 | 167..573 | 100 | <- | Minus |
arm_3L | 10159971..10160130 | 6..166 | 98 | | Minus |
BO17534.complete Sequence
865 bp assembled on 2006-10-11
GenBank Submission: FJ634164
> BO17534.complete
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGGCA
AGCTTTCTAGACCAT
BO17534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 834 | CG6628-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 3..834 | 16..847 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166809 | 573..167 | 2035 | 100 | Minus |
3L | 28110227 | 3L | 10166071..10166344 | 847..574 | 1370 | 100 | Minus |
3L | 28110227 | 3L | 10166870..10167021 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:09 has no hits.
BO17534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:45 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..834 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:23 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..839 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:39 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 4..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:45 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..839 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:05 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 4..834 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:05 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166069..10166344 | 574..849 | 99 | <- | Minus |
3L | 10166403..10166809 | 167..573 | 100 | <- | Minus |
3L | 10166871..10167020 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:39 Download gff for
BO17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159169..10159444 | 574..849 | 99 | <- | Minus |
arm_3L | 10159503..10159909 | 167..573 | 100 | <- | Minus |
arm_3L | 10159971..10160120 | 17..166 | 100 | | Minus |
BO17534.pep Sequence
Translation from 16 to 865
> BO17534.pep
MSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNKG
ELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMATL
QWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDGN
HTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNNT
HVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLKY
PSLCKAGEEYQDLIGQQGSKGKRFWTLASFLDH
BO17534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 277 | CG6628-PA | 1..277 | 1..277 | 1496 | 100 | Plus |
CG9822-PA | 263 | CG9822-PA | 19..256 | 24..260 | 435 | 41.1 | Plus |
scpr-A-PA | 264 | CG5207-PA | 16..254 | 24..262 | 394 | 38.5 | Plus |
scpr-B-PA | 262 | CG17210-PA | 20..252 | 30..262 | 393 | 39.5 | Plus |
scpr-C-PB | 262 | CG5106-PB | 20..252 | 30..262 | 390 | 39.1 | Plus |