Clone Sequence Records
BO17540.5prime Sequence
565 bp (506 high quality bases) assembled on 2006-10-13
> BO17540.5prime
GAAGTTATCAGTCGACATGGCCAAACCGTTTTCTTTGACAGAGGAGAAGC
TAGATGACCTATTTGTGCAGGAGGTTGTCAGTGTGGTGAAACTGGTGGAC
ATGCTGCCCGATAAAGATAACATTGTGCCCACATGCACCCGATGGCTCAA
CATCTTCCAGCAGTCAACGCCGAAGGAACGCTTTTCCAGAAACTATATGC
TACTGCTCCTTCATAAACAACTCAATGATCACAAATCGTTGGGTTATCCA
TTTACGTGGCCGGGCAGTTTCCAGTTGGATTTGCGCACTCTTCACCAAAT
GAGCCTAAAACCGAATCCCGCAATCGGCAAAGATGTTGTATGCTGCAAAT
TTGATGAAAGTTTGAATGAGGAGGAACAGTCTTCTTTTAGTTCATGCGAG
AATATAGTGGAGGCCAATCGTAGGTTGGTCAAAGAAAACGCTGCACTAAC
CAAGGAGTCGATGGAGCTTCAATGTCTGATCGATAAGTTGCAGGTGAAAC
GCGCGGCGGACAAACATGCCATTAAAAGGATAAATGATCAGATTTACCTG
CTGGACAAGGAGAAC
BO17540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 999 | CG14383-RA | 1..549 | 17..565 | 2720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 11..562 | 14..565 | 2745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987950..12988501 | 565..14 | 2745 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:41:02 has no hits.
BO17540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:23 Download gff for
BO17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-PA | 1..549 | 17..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:11 Download gff for
BO17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 3..562 | 7..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:19 Download gff for
BO17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 3..562 | 7..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:19 Download gff for
BO17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987950..12988509 | 7..565 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:11 Download gff for
BO17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813672..8814231 | 7..565 | 99 | | Minus |
BO17540.3prime Sequence
643 bp (601 high quality bases) assembled on 2006-10-13
> BO17540.3prime
ATGGTCTAGAAAGCTTGCCAACATCTCGTTCATAAGCTCGTAGTTGTGCT
GCAGGAACTTGAGTACTGCCTTCTTGGTGCTCGCTTTGCCCTTAAAGGTG
GCCTTGAACAATTTTCGCAGGACGGCTAGATATCTCATGGCACTGAGGGT
GAGCTCGTGGCTCTCGGCATCCAATTTCATGCCCAACACATTTTTGTATC
TCTTGCTCACCTGGGCTTTCAGATTGTCAAAACTTTGGCTTGCCTCCTCC
ATCAGAGGAGCACGCTGCTGTCGCCGGTAGTGATCCATGTGGGCATGTAG
CAAGGTTTTGAAGAGTTCGTTAAAGTGCTGCACCTGCTGGTGGTCTGATA
CGTCTTCGCAGAAAACACTGAACATGGTGTCAAAAAACATCGCCGGATCC
TGTCCATTGCATAGTCTTTTTAGGGCGCTGATTGAGGAGCAGGCGAAATT
TCGCTTCAGATATCGGTTCTCCTTGTCCAGCATGTAAATCTGATCATTTA
TCCTTTTAATGGCATGTTTGTCCGCCGCGCGTTTCACCTGCAACTTATCG
ATCAGACATTGAAGCTCCATCGACTCCTTGGTTAGTGCAGCGTTTTCTTT
GACCAACCTACGATTGGCCTCCACTATATTCTCGCATGAACTA
BO17540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 999 | CG14383-RA | 372..996 | 643..19 | 3125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 385..1009 | 643..19 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987503..12988127 | 19..643 | 3125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:06 has no hits.
BO17540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:22 Download gff for
BO17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-PA | 373..999 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:48 Download gff for
BO17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 386..1009 | 19..642 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:58 Download gff for
BO17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 386..1009 | 19..642 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:58 Download gff for
BO17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987503..12988126 | 19..642 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:48 Download gff for
BO17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813225..8813848 | 19..642 | 100 | | Plus |
BO17540.complete Sequence
1030 bp assembled on 2006-10-11
GenBank Submission: FJ634165
> BO17540.complete
GAAGTTATCAGTCGACATGGCCAAACCGTTTTCTTTGACAGAGGAGAAGC
TAGATGACCTATTTGTGCAGGAGGTTGTCAGTGTGGTGAAACTGGTGGAC
ATGCTGCCCGATAAAGATAACATTGTGCCCACATGCACCCGATGGCTCAA
CATCTTCCAGCAGTCAACGCCGAAGGAACGCTTTTCCAGAAACTATATGC
TACTGCTCCTTCATAAACAACTCAATGATCACAAATCGTTGGGTTATCCA
TTTACGTGGCCGGGCAGTTTCCAGTTGGATTTGCGCACTCTTCACCAAAT
GAGCCTAAAACCGAATCCCGCAATCGGCAAAGATGTTGTATGCTGCAAAT
TTGATGAAAGTTTGAATGAGGAGGAACAGTCTTCTTTTAGTTCATGCGAG
AATATAGTGGAGGCCAATCGTAGGTTGGTCAAAGAAAACGCTGCACTAAC
CAAGGAGTCGATGGAGCTTCAATGTCTGATCGATAAGTTGCAGGTGAAAC
GCGCGGCGGACAAACATGCCATTAAAAGGATAAATGATCAGATTTACATG
CTGGACAAGGAGAACCGATATCTGAAGCGAAATTTCGCCTGCTCCTCAAT
CAGCGCCCTAAAAAGACTATGCAATGGACAGGATCCGGCGATGTTTTTTG
ACACCATGTTCAGTGTTTTCTGCGAAGACGTATCAGACCACCAGCAGGTG
CAGCACTTTAACGAACTCTTCAAAACCTTGCTACATGCCCACATGGATCA
CTACCGGCGACAGCAGCGTGCTCCTCTGATGGAGGAGGCAAGCCAAAGTT
TTGACAATCTGAAAGCCCAGGTGAGCAAGAGATACAAAAATGTGTTGGGC
ATGAAATTGGATGCCGAGAGCCACGAGCTCACCCTCAGTGCCATGAGATA
TCTAGCCGTCCTGCGAAAATTGTTCAAGGCCACCTTTAAGGGCAAAGCGA
GCACCAAGAAGGCAGTACTCAAGTTCCTGCAGCACAACTACGAGCTTATG
AACGAGATGTTGGCAAGCTTTCTAGACCAT
BO17540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 999 | CG14383-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 11..1009 | 14..1012 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987503..12988501 | 1012..14 | 4995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:06:02 has no hits.
BO17540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:11 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:00 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:53:41 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 14..1009 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:12 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:53 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 14..1009 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:53 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987501..12988498 | 17..1014 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:53:41 Download gff for
BO17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813223..8814220 | 17..1014 | 99 | | Minus |
BO17540.pep Sequence
Translation from 16 to 1030
> BO17540.pep
MAKPFSLTEEKLDDLFVQEVVSVVKLVDMLPDKDNIVPTCTRWLNIFQQS
TPKERFSRNYMLLLLHKQLNDHKSLGYPFTWPGSFQLDLRTLHQMSLKPN
PAIGKDVVCCKFDESLNEEEQSSFSSCENIVEANRRLVKENAALTKESME
LQCLIDKLQVKRAADKHAIKRINDQIYMLDKENRYLKRNFACSSISALKR
LCNGQDPAMFFDTMFSVFCEDVSDHQQVQHFNELFKTLLHAHMDHYRRQQ
RAPLMEEASQSFDNLKAQVSKRYKNVLGMKLDAESHELTLSAMRYLAVLR
KLFKATFKGKASTKKAVLKFLQHNYELMNEMLASFLDH
BO17540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 332 | CG14383-PA | 1..332 | 1..332 | 1721 | 100 | Plus |
