Clone BO17544 Report

Search the DGRC for BO17544

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:175
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG13950-RA
Protein status:BO17544.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO17544.3prime Sequence

696 bp (576 high quality bases) assembled on 2006-10-13

> BO17544.3prime
ATGGTCTAGAAAGCTTGCAATGATGGACAACTTCTCCACGCGGGCCAGAA
GCGGAGAATCGGAGTGGTACTCCAGGCTCCGCACGGCGAAGTCGCCCACT
TCGTTGGTGAAGCACTTCAGAGTGGATATGGAGAAGGGGCGTCCGGGAAA
GTTGTAGTAGGTGAAGTACTGCCCGTTGACGGCGATCAGGAAAGCCCGAT
CCCCGAGCCCAAAAGCGATCTTGAAGAGCTTTCCGCGCACAAATGGGAAT
TCGCCCTCGGTCTCCTCGTCGCTCAAGGCAAAACTGTTGTCTTCACGCTG
GTAGCTGCGTGACACGGTTGTCCGATCGAAGTTCACGTGGAACCGGAGCA
CCGTACGCCCGGTGTCGTTGCACTGGAAGCAGATGGAGAACTCCGTGGTC
GGCGGGCCCTTGGCGATGCACTCCATGGCCACCACTGTGCCGGTTTCATA
CCGCCTGGGCACGTCGCTCTGGAAGGCCACCTTGTCCGGACACATGAGCG
TTCTGGGGAAGACGAGCGGAAAGAGCATGCGGTGGTGGAACTGGGTGATC
TTCTCGAAGTCGCCGTAGGTGCGCACGTAGTTGATTTGCTTGGGGAACTT
GACGAACTCGAAGGACCCGTACAGCTGGTCGTTCACGTAAATCTCGAAGC
ATCGCTGCAGCACCGCCACCCGGGAAGGTGAAGCTCTGGCCAGGCT

BO17544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-PA 951 CG13950-RA 294..948 673..19 3250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-RA 1073 CG13950-RA 284..960 696..19 3350 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 860946..861357 696..284 2000 99.5 Minus
2L 23513712 2L 861427..861693 285..19 1335 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:46:50 has no hits.

BO17544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:29 Download gff for BO17544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-PA 272..951 15..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:45:54 Download gff for BO17544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 284..963 15..696 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:37 Download gff for BO17544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 284..963 15..696 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:37 Download gff for BO17544.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 860946..861357 284..696 99 -> Minus
2L 861429..861696 15..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:45:54 Download gff for BO17544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 860946..861357 284..696 99 -> Minus
arm_2L 861429..861696 15..283 99   Minus

BO17544.5prime Sequence

674 bp (595 high quality bases) assembled on 2006-10-13

> BO17544.5prime
GAAGTTATCAGTCGACATGAACGTTTGGAAAGCAAAGGTCCTAACGGAGG
TCCCATTCGGACACGTCCTCATCGTCAGTGGGCGCGTCAAGCCTCATCCG
AATAAAATTTCGCTGGACCTCACGGACAATGTGAACGCGCAGAACGAGAG
CGAAACGGTGTTCCTGAAGATCGAGGCCAATTTCCGCGAGGGCCAAATCA
TCCGCAGCATGTTCCAGCCGGGCGGGGGATGGCAGCAGGAGGAGATCTCG
AAGAACTGGAAGTGCGACGGCCCAAAGAACCCGCTGCAGCCTGGCCAGAG
CTTCACCTTCCGGGTGGCGGTGCTGCAGCGATGCTTCGAGATCTACGTGA
ACGACCAGCTGTACGGGTCCTTCGAGTTCGTCAAGTTCCCCAAGCAAATC
AACTACGTGCGCACCTACGGCGACTTCGAGAAGATCACCCAGTTCCACCA
CCGCATGCTCTTTCCGCTCGTCTTCCCCAGAACGCTCATGTGTCCGGACA
AGGTGGCCTTCCAGAGCGACGTGCCCAGGCGGTATGAAACCGGCACAGTG
GTGGCCATGGAGTGCATCGCCAAGGGCCCGCCGACCACGGAGTTCTCCAT
CTGCTTCCAGTGCAACGACACGGGGCGTACGGTGCTCCGGTTCCACGTGA
ACTTCGATCGGAACACCGTGTCAC

BO17544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-PA 951 CG13950-RA 1..658 17..674 3215 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-RA 1073 CG13950-RA 13..670 17..674 3245 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 860764..861332 106..674 2800 99.5 Plus
2L 23513712 2L 860321..860409 17..105 445 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:25:14 has no hits.

BO17544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:29 Download gff for BO17544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-PA 1..658 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:50 Download gff for BO17544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 6..670 10..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:20 Download gff for BO17544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 6..670 10..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:20 Download gff for BO17544.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 860314..860409 10..105 96 -> Plus
2L 860764..861332 106..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:50 Download gff for BO17544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 860314..860409 10..105 96 -> Plus
arm_2L 860764..861332 106..674 99   Plus

BO17544.complete Sequence

982 bp assembled on 2006-10-11

GenBank Submission: FJ634166

> BO17544.complete
GAAGTTATCAGTCGACATGAACGTTTGGAAAGCAAAGGTCCTAACGGAGG
TCCCATTCGGACACGTCCTCATCGTCAGTGGGCGCGTCAAGCCTCATCCG
AATAAAATTTCGCTGGACCTCACGGACAATGTGAACGCGCAGAACGAGAG
CGAAACGGTGTTCCTGAAGATCGAGGCCAATTTCCGCGAGGGCCAAATCA
TCCGCAGCATGTTCCAGCCGGGCGGGGGATGGCAGCAGGAGGAGATCTCG
AAGAACTGGAAGTGCGACGGCCCAAAGAACCCGCTGCAGCCTGGCCAGAG
CTTCACCTTCCGGGTGGCGGTGCTGCAGCGATGCTTCGAGATCTACGTGA
ACGACCAGCTGTACGGGTCCTTCGAGTTCGTCAAGTTCCCCAAGCAAATC
AACTACGTGCGCACCTACGGCGACTTCGAGAAGATCACCCAGTTCCACCA
CCGCATGCTCTTTCCGCTCGTCTTCCCCAGAACGCTCATGTGTCCGGACA
AGGTGGCCTTCCAGAGCGACGTGCCCAGGCGGTATGAAACCGGCACAGTG
GTGGCCATGGAGTGCATCGCCAAGGGCCCGCCGACCACGGAGTTCTCCAT
CTGCTTCCAGTGCAACGACACCGGGCGTACGGTGCTCCGGTTCCACGTGA
ACTTCGATCGGACAACCGTGTCACGCAGCTACCAGCGTGAAGACAACAGT
TTTGCCTTGAGCGACGAGGAGACCGAGGGCGAATTCCCATTTGTGCGCGG
AAAGCTCTTCAAGATCGCTTTTGGGCTCGGGGATCGGGCTTTCCTGATCG
CCGTCAACGGGCAGTACTTCACCTACTACAACTTTCCCGGACGCCCCTTC
TCCATATCCACTCTGAAGTGCTTCACCAACGAAGTGGGCGACTTCGCCGT
GCGGAGCCTGGAGTACCACTCCGATTCTCCGCTTCTGGCCCGCGTGGAGA
AGTTGTCCATCATTGCAAGCTTTCTAGACCAT

BO17544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-RA 951 CG13950-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-RA 1073 CG13950-RA 13..960 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 860764..861357 106..699 2970 100 Plus
2L 23513712 2L 861427..861693 698..964 1335 100 Plus
2L 23513712 2L 860321..860409 17..105 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:25 has no hits.

BO17544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:12 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 1..951 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:02 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 1..951 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:35 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 13..960 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:13 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 1..951 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:09 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
CG13950-RA 13..960 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:09 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 860321..860409 17..105 100 -> Plus
2L 860764..861357 106..699 100 -> Plus
2L 861429..861693 700..966 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:35 Download gff for BO17544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 860321..860409 17..105 100 -> Plus
arm_2L 860764..861357 106..699 100 -> Plus
arm_2L 861429..861693 700..966 99   Plus

BO17544.pep Sequence

Translation from 16 to 982

> BO17544.pep
MNVWKAKVLTEVPFGHVLIVSGRVKPHPNKISLDLTDNVNAQNESETVFL
KIEANFREGQIIRSMFQPGGGWQQEEISKNWKCDGPKNPLQPGQSFTFRV
AVLQRCFEIYVNDQLYGSFEFVKFPKQINYVRTYGDFEKITQFHHRMLFP
LVFPRTLMCPDKVAFQSDVPRRYETGTVVAMECIAKGPPTTEFSICFQCN
DTGRTVLRFHVNFDRTTVSRSYQREDNSFALSDEETEGEFPFVRGKLFKI
AFGLGDRAFLIAVNGQYFTYYNFPGRPFSISTLKCFTNEVGDFAVRSLEY
HSDSPLLARVEKLSIIASFLDH

BO17544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13950-PA 316 CG13950-PA 1..316 1..316 1685 100 Plus
CG5335-PA 321 CG5335-PA 15..270 14..273 221 26.9 Plus