Clone Sequence Records
BO17544.3prime Sequence
696 bp (576 high quality bases) assembled on 2006-10-13
> BO17544.3prime
ATGGTCTAGAAAGCTTGCAATGATGGACAACTTCTCCACGCGGGCCAGAA
GCGGAGAATCGGAGTGGTACTCCAGGCTCCGCACGGCGAAGTCGCCCACT
TCGTTGGTGAAGCACTTCAGAGTGGATATGGAGAAGGGGCGTCCGGGAAA
GTTGTAGTAGGTGAAGTACTGCCCGTTGACGGCGATCAGGAAAGCCCGAT
CCCCGAGCCCAAAAGCGATCTTGAAGAGCTTTCCGCGCACAAATGGGAAT
TCGCCCTCGGTCTCCTCGTCGCTCAAGGCAAAACTGTTGTCTTCACGCTG
GTAGCTGCGTGACACGGTTGTCCGATCGAAGTTCACGTGGAACCGGAGCA
CCGTACGCCCGGTGTCGTTGCACTGGAAGCAGATGGAGAACTCCGTGGTC
GGCGGGCCCTTGGCGATGCACTCCATGGCCACCACTGTGCCGGTTTCATA
CCGCCTGGGCACGTCGCTCTGGAAGGCCACCTTGTCCGGACACATGAGCG
TTCTGGGGAAGACGAGCGGAAAGAGCATGCGGTGGTGGAACTGGGTGATC
TTCTCGAAGTCGCCGTAGGTGCGCACGTAGTTGATTTGCTTGGGGAACTT
GACGAACTCGAAGGACCCGTACAGCTGGTCGTTCACGTAAATCTCGAAGC
ATCGCTGCAGCACCGCCACCCGGGAAGGTGAAGCTCTGGCCAGGCT
BO17544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-PA | 951 | CG13950-RA | 294..948 | 673..19 | 3250 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-RA | 1073 | CG13950-RA | 284..960 | 696..19 | 3350 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 860946..861357 | 696..284 | 2000 | 99.5 | Minus |
2L | 23513712 | 2L | 861427..861693 | 285..19 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:46:50 has no hits.
BO17544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:29 Download gff for
BO17544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-PA | 272..951 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:45:54 Download gff for
BO17544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 284..963 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:03:37 Download gff for
BO17544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 284..963 | 15..696 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:03:37 Download gff for
BO17544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 860946..861357 | 284..696 | 99 | -> | Minus |
2L | 861429..861696 | 15..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:45:54 Download gff for
BO17544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 860946..861357 | 284..696 | 99 | -> | Minus |
arm_2L | 861429..861696 | 15..283 | 99 | | Minus |
BO17544.5prime Sequence
674 bp (595 high quality bases) assembled on 2006-10-13
> BO17544.5prime
GAAGTTATCAGTCGACATGAACGTTTGGAAAGCAAAGGTCCTAACGGAGG
TCCCATTCGGACACGTCCTCATCGTCAGTGGGCGCGTCAAGCCTCATCCG
AATAAAATTTCGCTGGACCTCACGGACAATGTGAACGCGCAGAACGAGAG
CGAAACGGTGTTCCTGAAGATCGAGGCCAATTTCCGCGAGGGCCAAATCA
TCCGCAGCATGTTCCAGCCGGGCGGGGGATGGCAGCAGGAGGAGATCTCG
AAGAACTGGAAGTGCGACGGCCCAAAGAACCCGCTGCAGCCTGGCCAGAG
CTTCACCTTCCGGGTGGCGGTGCTGCAGCGATGCTTCGAGATCTACGTGA
ACGACCAGCTGTACGGGTCCTTCGAGTTCGTCAAGTTCCCCAAGCAAATC
AACTACGTGCGCACCTACGGCGACTTCGAGAAGATCACCCAGTTCCACCA
CCGCATGCTCTTTCCGCTCGTCTTCCCCAGAACGCTCATGTGTCCGGACA
AGGTGGCCTTCCAGAGCGACGTGCCCAGGCGGTATGAAACCGGCACAGTG
GTGGCCATGGAGTGCATCGCCAAGGGCCCGCCGACCACGGAGTTCTCCAT
CTGCTTCCAGTGCAACGACACGGGGCGTACGGTGCTCCGGTTCCACGTGA
ACTTCGATCGGAACACCGTGTCAC
BO17544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-PA | 951 | CG13950-RA | 1..658 | 17..674 | 3215 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-RA | 1073 | CG13950-RA | 13..670 | 17..674 | 3245 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 860764..861332 | 106..674 | 2800 | 99.5 | Plus |
2L | 23513712 | 2L | 860321..860409 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:14 has no hits.
BO17544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:29 Download gff for
BO17544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-PA | 1..658 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:50 Download gff for
BO17544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 6..670 | 10..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:20 Download gff for
BO17544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 6..670 | 10..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:20 Download gff for
BO17544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 860314..860409 | 10..105 | 96 | -> | Plus |
2L | 860764..861332 | 106..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:50 Download gff for
BO17544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 860314..860409 | 10..105 | 96 | -> | Plus |
arm_2L | 860764..861332 | 106..674 | 99 | | Plus |
BO17544.complete Sequence
982 bp assembled on 2006-10-11
GenBank Submission: FJ634166
> BO17544.complete
GAAGTTATCAGTCGACATGAACGTTTGGAAAGCAAAGGTCCTAACGGAGG
TCCCATTCGGACACGTCCTCATCGTCAGTGGGCGCGTCAAGCCTCATCCG
AATAAAATTTCGCTGGACCTCACGGACAATGTGAACGCGCAGAACGAGAG
CGAAACGGTGTTCCTGAAGATCGAGGCCAATTTCCGCGAGGGCCAAATCA
TCCGCAGCATGTTCCAGCCGGGCGGGGGATGGCAGCAGGAGGAGATCTCG
AAGAACTGGAAGTGCGACGGCCCAAAGAACCCGCTGCAGCCTGGCCAGAG
CTTCACCTTCCGGGTGGCGGTGCTGCAGCGATGCTTCGAGATCTACGTGA
ACGACCAGCTGTACGGGTCCTTCGAGTTCGTCAAGTTCCCCAAGCAAATC
AACTACGTGCGCACCTACGGCGACTTCGAGAAGATCACCCAGTTCCACCA
CCGCATGCTCTTTCCGCTCGTCTTCCCCAGAACGCTCATGTGTCCGGACA
AGGTGGCCTTCCAGAGCGACGTGCCCAGGCGGTATGAAACCGGCACAGTG
GTGGCCATGGAGTGCATCGCCAAGGGCCCGCCGACCACGGAGTTCTCCAT
CTGCTTCCAGTGCAACGACACCGGGCGTACGGTGCTCCGGTTCCACGTGA
ACTTCGATCGGACAACCGTGTCACGCAGCTACCAGCGTGAAGACAACAGT
TTTGCCTTGAGCGACGAGGAGACCGAGGGCGAATTCCCATTTGTGCGCGG
AAAGCTCTTCAAGATCGCTTTTGGGCTCGGGGATCGGGCTTTCCTGATCG
CCGTCAACGGGCAGTACTTCACCTACTACAACTTTCCCGGACGCCCCTTC
TCCATATCCACTCTGAAGTGCTTCACCAACGAAGTGGGCGACTTCGCCGT
GCGGAGCCTGGAGTACCACTCCGATTCTCCGCTTCTGGCCCGCGTGGAGA
AGTTGTCCATCATTGCAAGCTTTCTAGACCAT
BO17544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-RA | 951 | CG13950-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-RA | 1073 | CG13950-RA | 13..960 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 860764..861357 | 106..699 | 2970 | 100 | Plus |
2L | 23513712 | 2L | 861427..861693 | 698..964 | 1335 | 100 | Plus |
2L | 23513712 | 2L | 860321..860409 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:25 has no hits.
BO17544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:12 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:02 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:35 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 13..960 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:13 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:09 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13950-RA | 13..960 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:09 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 860321..860409 | 17..105 | 100 | -> | Plus |
2L | 860764..861357 | 106..699 | 100 | -> | Plus |
2L | 861429..861693 | 700..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:35 Download gff for
BO17544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 860321..860409 | 17..105 | 100 | -> | Plus |
arm_2L | 860764..861357 | 106..699 | 100 | -> | Plus |
arm_2L | 861429..861693 | 700..966 | 99 | | Plus |
BO17544.pep Sequence
Translation from 16 to 982
> BO17544.pep
MNVWKAKVLTEVPFGHVLIVSGRVKPHPNKISLDLTDNVNAQNESETVFL
KIEANFREGQIIRSMFQPGGGWQQEEISKNWKCDGPKNPLQPGQSFTFRV
AVLQRCFEIYVNDQLYGSFEFVKFPKQINYVRTYGDFEKITQFHHRMLFP
LVFPRTLMCPDKVAFQSDVPRRYETGTVVAMECIAKGPPTTEFSICFQCN
DTGRTVLRFHVNFDRTTVSRSYQREDNSFALSDEETEGEFPFVRGKLFKI
AFGLGDRAFLIAVNGQYFTYYNFPGRPFSISTLKCFTNEVGDFAVRSLEY
HSDSPLLARVEKLSIIASFLDH
BO17544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13950-PA | 316 | CG13950-PA | 1..316 | 1..316 | 1685 | 100 | Plus |
CG5335-PA | 321 | CG5335-PA | 15..270 | 14..273 | 221 | 26.9 | Plus |