Clone Sequence Records
BO17545.3prime Sequence
868 bp (740 high quality bases) assembled on 2006-10-13
> BO17545.3prime
ATGGTCTAGAAAGCTTGCCAAGGAAACATCCTTACGAATGTACACGCCCA
CAACAAAGGCGTAACCGGCCTTAAAGGGCTCCAATAGAACCATTTCCTTT
GGTTCCAGCTGCTTCTCCTTTAAAAGTCTCCTCTCGGCGGCAAAGGAATC
CTTATTAAAGACCACACCTTGACTAGTAGGCGAATGTAAATAGGCCACGA
AGTGACCACCGGGGTTCAGGAAGTGTCTAGCATTTAGCATCAGAGCTCGA
ATCAGAACCGAAGGCGGAAGATCAGCGAAGATAATGTCAATGCAAGCGGG
AACCTCATAGCGGTATTTATATGGCATGGTAGCATCCTCGACTATGGGTA
CGATATTTGAACGACGATTGGCCATTATGGTCAGCTGACGACCAGCCCAA
GGAATCTGCTCCACAGCATAAACCATTCCGGAGTCACCCACTATATCCGA
GATGTGGGATACCGATCGCCCAAACCCAGCTCCCAGGTATAGGACCTTTG
AGCCAATTTGCAGATGCAAATCACTGACACCACCCATTATTCCAGCTGCC
AGTTTGGATTGGAAGGGAGACCAGACTCGGAATTCACATCGCATTTCCCG
GTATTCCGAAATGACCCTCCGCTCACCGTAGTCATCCGCACTGGAGCTCG
TATTCCTGGTGAGCAATTGTATGGCATCGAAGCGGTTGCGCAACAAATAG
ACGCCGTAATGTCGGTGCGGTTCAATGCGGTCTGAGGTTCCAGAAAATAT
CCTAGTCTCCAACGTGACCTCTTGCTCATGACCTTGATCTTCAACGTTAC
ATTCACTTTGACAATCATTTTGTATTGAATCCCCTCCTGCGGATTCAATG
TCCCATATGGAGGTCCTA
BO17545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 1050 | CG10909-RA | 198..1047 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 260..1109 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910184..12911033 | 19..868 | 4250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:21:21 has no hits.
BO17545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:30 Download gff for
BO17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-PA | 199..1050 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:11 Download gff for
BO17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 261..1114 | 11..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:43 Download gff for
BO17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 261..1114 | 11..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:43 Download gff for
BO17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910179..12911032 | 11..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:11 Download gff for
BO17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8735901..8736754 | 11..867 | 99 | | Plus |
BO17545.5prime Sequence
870 bp (829 high quality bases) assembled on 2006-10-13
> BO17545.5prime
GAAGTTATCAGTCGACATGAGTATGGAATCCAAGTCGAAGCGGCGGTCCC
CTCCAAGCAGTACTCTTGAAGAAGAAGTTCCTGGAAAGACCATCCACCCT
GAGGATCCGAAAATTACATCTAAAAACTTCGAGAATCCCACAAAAGAAAC
TTCCATCCAGAGCCCCATTAAGAACTCCATAAAACCATCGTGGAATCCAG
AACCCAAGATCACTAGGACCTCCATATGGGACATTGAATCCGCAGGAGGG
GATTCAATACAAAATGATTGTCAAAGTGAATGTAACGTTGAAGATCAAGG
TCATGAGCAAGAGGTCACGTTGGAGACTAGGATATTTTCTGGAACCTCAG
ACCGCATTGAACCGCACCGACATTACGGCGTCTATTTGTTGCGCAACCGC
TTCGATGCCATACAATTGCTCACCAGGAATACGAGCTCCAGTGCGGATGA
CTACGGTGAGCGGAGGGTCATTTCGGAATACCGGGAAATGCGATGTGAAT
TCCGAGTCTGGTCTCCCTTCCAATCCAAACTGGCAGCTGGAATAATGGGT
GGTGTCAGTGATTTGCATCTGCAAATTGGCTCAAAGGTCCTATACCTGGG
AGCTGGGTTTGGGCGATCGGTATCCCACATCTCGGATATAGTGGGTGACT
CCGGAATGGTTTATGCTGTGGAGCAGATTCCTTGGGCTGGTCGTCAGCTG
ACCATAATGGCCAATCGTCGTTCAAATATCGTACCCATAGTCGAGGATGC
TACCATGCCATATAAATACCGCTATGAGGTTCCCGCTTGCATTGACATTA
TCTTCGCTGATCTTCCGCCTTCGGTTCTGATTCGAGCTCTGATGCTAAAT
GCTAGACACTTCCTGACCCC
BO17545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 1050 | CG10909-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 63..916 | 17..870 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910377..12911230 | 870..17 | 4255 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:53:18 has no hits.
BO17545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:32 Download gff for
BO17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:22 Download gff for
BO17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..916 | 14..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:14 Download gff for
BO17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..916 | 14..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:14 Download gff for
BO17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910376..12911233 | 14..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:22 Download gff for
BO17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8736098..8736955 | 14..870 | 99 | | Minus |
BO17545.complete Sequence
1081 bp assembled on 2006-10-11
GenBank Submission: FJ634167
> BO17545.complete
GAAGTTATCAGTCGACATGAGTATGGAATCCAAGTCGAAGCGGCGGTCCC
CTCCAAGCAGTACTCTTGAAGAAGAAGTTCCTGGAAAGACCATCCACCCT
GAGGATCCGAAAATTACATCTAAAAACTTCGAGAATCCCACAAAAGAAAC
TTCCATCCAGAGCCCCATTAAGAACTCCATAAAACCATCGTGGAATCCAG
AACCCAAGATCACTAGGACCTCCATATGGGACATTGAATCCGCAGGAGGG
GATTCAATACAAAATGATTGTCAAAGTGAATGTAACGTTGAAGATCAAGG
TCATGAGCAAGAGGTCACGTTGGAGACTAGGATATTTTCTGGAACCTCAG
ACCGCATTGAACCGCACCGACATTACGGCGTCTATTTGTTGCGCAACCGC
TTCGATGCCATACAATTGCTCACCAGGAATACGAGCTCCAGTGCGGATGA
CTACGGTGAGCGGAGGGTCATTTCGGAATACCGGGAAATGCGATGTGAAT
TCCGAGTCTGGTCTCCCTTCCAATCCAAACTGGCAGCTGGAATAATGGGT
GGTGTCAGTGATTTGCATCTGCAAATTGGCTCAAAGGTCCTATACCTGGG
AGCTGGGTTTGGGCGATCGGTATCCCACATCTCGGATATAGTGGGTGACT
CCGGAATGGTTTATGCTGTGGAGCAGATTCCTTGGGCTGGTCGTCAGCTG
ACCATAATGGCCAATCGTCGTTCAAATATCGTACCCATAGTCGAGGATGC
TACCATGCCATATAAATACCGCTATGAGGTTCCCGCTTGCATTGACATTA
TCTTCGCTGATCTTCCGCCTTCGGTTCTGATTCGAGCTCTGATGCTAAAT
GCTAGACACTTCCTGAACCCCGGTGGTCACTTCGTGGCCTATTTACATTC
GCCTACTAGTCAAGGTGTGGTCTTTAATAAGGATTCCTTTGCCGCCGAGA
GGAGACTTTTAAAGGAGAAGCAGCTGGAACCAAAGGAAATGGTTCTATTG
GAGCCCTTTAAGGCCGGTTACGCCTTTGTTGTGGGCGTGTACATTCGTAA
GGATGTTTCCTTGGCAAGCTTTCTAGACCAT
BO17545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1050 | CG10909-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 63..1109 | 17..1063 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910184..12911230 | 1063..17 | 5235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:27 has no hits.
BO17545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:13 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 1..1050 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:06 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..1112 | 14..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:09 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 63..1109 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:14 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..1112 | 14..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:35 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 63..1109 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:35 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910182..12911230 | 17..1065 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:09 Download gff for
BO17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8735904..8736952 | 17..1065 | 99 | | Minus |
BO17545.pep Sequence
Translation from 16 to 1081
> BO17545.pep
MSMESKSKRRSPPSSTLEEEVPGKTIHPEDPKITSKNFENPTKETSIQSP
IKNSIKPSWNPEPKITRTSIWDIESAGGDSIQNDCQSECNVEDQGHEQEV
TLETRIFSGTSDRIEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERR
VISEYREMRCEFRVWSPFQSKLAAGIMGGVSDLHLQIGSKVLYLGAGFGR
SVSHISDIVGDSGMVYAVEQIPWAGRQLTIMANRRSNIVPIVEDATMPYK
YRYEVPACIDIIFADLPPSVLIRALMLNARHFLNPGGHFVAYLHSPTSQG
VVFNKDSFAAERRLLKEKQLEPKEMVLLEPFKAGYAFVVGVYIRKDVSLA
SFLDH
BO17545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 349 | CG10909-PA | 1..349 | 1..349 | 1817 | 100 | Plus |
| Fib-PA | 344 | CG9888-PA | 108..338 | 109..342 | 526 | 46.6 | Plus |
