Clone Sequence Records
BO17546.3prime Sequence
759 bp (717 high quality bases) assembled on 2006-10-13
> BO17546.3prime
ATGGTCTAGAAAGCTTGCGTAGAGCTTTTTCCACGGTATGATCTCCCAGG
AGCGAACGATGTGGCGTCCGAAGAGAAAGTCCTTCAGCTTGTTCATTATG
TAAAACGAGATGCCGAAGAAGGAGGCGAAGTACAGCCAGAACTGTCCAAG
CCGTTCCCAAATGCTAAGATGATAGCGAGCGGCAACTTGGAGCACGTCCA
GCTCCAGGTCAATGATGAGACCAGGCTGCAAGCGCGCTGACGTTTCTCTG
TAGTATGTCTCCTGCACGGCCAGCTGGAAATATGCTGGATTGGCCTTGAC
TTGCGCTAGCAGCGATTCCATCTTGAACTGATCTATATTTCCGTTGGTAG
AGTTCGTATCCAATTGAACCTGTCGGAACTGAGTCTTGATGTTGCGTCCC
GGAAATGGACAGGTGAACTCTACGTATTGCTTCAGCTGCAGCTCTCCCTT
CAGTTGAACGTGTCCATTTCTGAGGCGAGCGTGCAGAGGAAGCTGTAACT
GATGGGCCAGCACGGACGGAGGCGATAGATCGCACTTGTGCTGCAGTTCA
GCTTCAAAGAAGACCAGCAGATTGAAGCTCACCAATCGCGTGGGCACATC
CTGCAGTTCCAGCTGAAAGTGCGCCCGATCTGTTACGCCATCGTAGTCCA
CATCCTCTGTCCAATATCTAGTGGTGGTGCAGCTATTTCGTATAACTCTC
CATTTGCTCATTGAACTGGCTGAAGCTGCTGCAAGCGACCAGGGATTCCT
CCTCCTCGT
BO17546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 981 | CG14020-RA | 310..978 | 687..19 | 3345 | 100 | Minus |
| CG14020-PA | 981 | CG14020-RA | 239..311 | 759..687 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 344..1083 | 759..19 | 3680 | 99.9 | Minus |
| CG14020-RA | 1213 | CG14020-RA | 344..1083 | 759..19 | 3680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5518080..5518819 | 759..19 | 3655 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:21:34 has no hits.
BO17546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:33 Download gff for
BO17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-PA | 239..981 | 16..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:13 Download gff for
BO17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 344..1083 | 19..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:44 Download gff for
BO17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 344..1083 | 19..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:44 Download gff for
BO17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5518080..5518819 | 19..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:13 Download gff for
BO17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5518080..5518819 | 19..759 | 99 | | Minus |
BO17546.5prime Sequence
750 bp (716 high quality bases) assembled on 2006-10-13
> BO17546.5prime
GAAGTTATCAGTCGACATGAAATTTATTCCGCTGCACACGACAAACACGG
CGATCGTGTACAAGAACTCGCTGTGCTCCTTTGCCTCGCTTTTGGTCCTG
GCCTTCATTGCGCTTTCTGTGATGCTGCCCGTGCTGCTCGTGTCCTTGCT
GAGTCCCTATTCTGGAATATCAGAATCGAGGGTGCTGTACGAGCAGCCGA
ATGTCGAGTTCAACTACGAGTACATATTCGTGGGCACAACGGATCAGGGG
GAGTACGAGGAGGAGGAATCCCTGGTCGCTTGCAGCAGCTTCAGCCAGTT
CAATGAGCAAATGGAGAGTTATACGAATAGCTGCACCACCACTAGATATT
GGACAGAGGATGTGGACTACGATGGCGTAACAGATCGGGCGCACTTTCAG
CTGGAACTGCAGGATGTGCCCACGCGATTGGTGAGCTTCAATCTGCTGGT
CTTCTTTGAAGCTGAACTGCAGCACAAGTGCGATCTATCGCCTCCGTCCG
TGCTGGCCCATCAGTTACAGCTTCCTCTGCACGCTCGCCTCAGAAATGGA
CACGTTCAACTGAAGGGAGAGCTGCAGCTGAAGCAATACGTAGAGTTCAC
CTGTCCATTTCCGGGACGCAACATCAAGACTCAGTTCCGACAGGTTCAAT
TGGATACGAACTCTACCAACGGAAATATAGATCAGTTCAAGATGGAATCG
CTGCTAGCGCAAGTCAAGGGCAATCCCACATATTTCCAGCTGGCCGTGCA
BO17546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 981 | CG14020-RA | 1..734 | 17..750 | 3595 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 106..839 | 17..750 | 3625 | 99.6 | Plus |
| CG14020-RA | 1213 | CG14020-RA | 106..839 | 17..750 | 3625 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5517842..5518575 | 17..750 | 3625 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:53:30 has no hits.
BO17546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:33 Download gff for
BO17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-PA | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:44:23 Download gff for
BO17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 99..838 | 10..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:16 Download gff for
BO17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 99..838 | 10..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:16 Download gff for
BO17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5517835..5518574 | 10..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:44:23 Download gff for
BO17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5517835..5518574 | 10..749 | 99 | | Plus |
BO17546.complete Sequence
1012 bp assembled on 2006-10-11
GenBank Submission: FJ634168
> BO17546.complete
GAAGTTATCAGTCGACATGAAATTTATTCCGCTGCACACGACAAACACGG
CGATCGTGTACAAGAACTCGCTGTGCTCCTTTGCCTCGCTTTTGGTCCTG
GCCTTCATTGCGCTTTCTGTGATGCTGCCCGTGCTGCTCGTGTCCTTGCT
GAGTCCCTATTCTGGAATATCAGAATCGAGGGTGCTGTACGAGCAGCCGA
ATGTCGAGTTCAACTACGAGTACATATTCGTGGGCACAACGGATCAGGGG
GAGTACGAGGAGGAGGAATCCCTGGTCGCTTGCAGCAGCTTCAGCCAGTT
CAATGAGCAAATGGAGAGTTATACGAATAGCTGCACCACCACTAGATATT
GGACAGAGGATGTGGACTACGATGGCGTAACAGATCGGGCGCACTTTCAG
CTGGAACTGCAGGATGTGCCCACGCGATTGGTGAGCTTCAATCTGCTGGT
CTTCTTTGAAGCTGAACTGCAGCACAAGTGCGATCTATCGCCTCCGTCCG
TGCTGGCCCATCAGTTACAGCTTCCTCTGCACGCTCGCCTCAGAAATGGA
CACGTTCAACTGAAGGGAGAGCTGCAGCTGAAGCAATACGTAGAGTTCAC
CTGTCCATTTCCGGGACGCAACATCAAGACTCAGTTCCGACAGGTTCAAT
TGGATACGAACTCTACCAACGGAAATATAGATCAGTTCAAGATGGAATCG
CTGCTAGCGCAAGTCAAGGCCAATCCAGCATATTTCCAGCTGGCCGTGCA
GGAGACATACTACAGAGAAACGTCAGCGCGCTTGCAGCCTGGTCTCATCA
TTGACCTGGAGCTGGACGTGCTCCAAGTTGCCGCTCGCTATCATCTTAGC
ATTTGGGAACGGCTTGGACAGTTCTGGCTGTACTTCGCCTCCTTCTTCGG
CATCTCGTTTTACATAATGAACAAGCTGAAGGACTTTCTCTTCGGACGCC
ACATCGTTCGCTCCTGGGAGATCATACCGTGGAAAAAGCTCTACGCAAGC
TTTCTAGACCAT
BO17546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1032 | CG14020-PB | 1..978 | 17..994 | 4890 | 100 | Plus |
| CG14020-RA | 981 | CG14020-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 106..1083 | 17..994 | 4890 | 100 | Plus |
| CG14020-RA | 1213 | CG14020-RA | 106..1083 | 17..994 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5517842..5518819 | 17..994 | 4890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:04:47 has no hits.
BO17546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:15 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:10 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:56 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 106..1083 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:16 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:09 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 106..1083 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:09 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5517842..5518819 | 17..996 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:56 Download gff for
BO17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5517842..5518819 | 17..996 | 99 | | Plus |
BO17546.pep Sequence
Translation from 16 to 1012
> BO17546.pep
MKFIPLHTTNTAIVYKNSLCSFASLLVLAFIALSVMLPVLLVSLLSPYSG
ISESRVLYEQPNVEFNYEYIFVGTTDQGEYEEEESLVACSSFSQFNEQME
SYTNSCTTTRYWTEDVDYDGVTDRAHFQLELQDVPTRLVSFNLLVFFEAE
LQHKCDLSPPSVLAHQLQLPLHARLRNGHVQLKGELQLKQYVEFTCPFPG
RNIKTQFRQVQLDTNSTNGNIDQFKMESLLAQVKANPAYFQLAVQETYYR
ETSARLQPGLIIDLELDVLQVAARYHLSIWERLGQFWLYFASFFGISFYI
MNKLKDFLFGRHIVRSWEIIPWKKLYASFLDH
BO17546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 326 | CG14020-PA | 1..326 | 1..326 | 1702 | 100 | Plus |
| CG14020-PB | 343 | CG14020-PB | 1..326 | 1..326 | 1702 | 100 | Plus |
