Clone Sequence Records
BO17547.3prime Sequence
722 bp (667 high quality bases) assembled on 2006-10-13
> BO17547.3prime
ATGGTCTAGAAAGCTTGCCTTGAACCTCAGCAGGTTGTCCACTCCGCCAA
GCGGACCATGACCGAAGTGCAGGGCATCCGACGTGGATTCCGATCGAGTG
CGTGCCTCCAGAACGGAGGCCACCCGCTGCTGACCACTGATGTAGCCCAG
GGATCCGGAGCCGAGATACACATTACCGTTGGGCAAACGCACAAAGCCCA
GGCCGCCCGATCCCAAGGCAATGGCATCCCCTCCCGATGCACCACCCTGG
GATCTGGGCTGGATGGCAAGCTGCTGCTGCTCCAGCAGCAAGGAATTAGC
CCGTGAGTCCAGCTGGATTCCATTGGCGGATGGAGCACCAACATGTGCTC
CATAGCGATCGAAGAAACTCGTTCCGGACAGGAATGGAGCCGGGGTCTCG
TCTATGTCGTTGTCAATAATCTCGATGACGGCATATTGCTTCAGCTGCCT
GCCATTGGCCACGTAGGATTCTCCGGGCGAGATCAACGCCTGCTTGCCGA
AGGGAATGCGCAGATTTCCTCCCGCTGTCAGTGGAGCTGGTCCCGTGGGC
GGCACCACGATGGGCGTGGCAAGAGAAGTCCTTGCCGGCGGTGGAGGTCC
GTAGATGGGTTTGAAAGTGGGCGTTCCGTGGAAACTTATAGATGAGATGG
GTGCAGCAGCTGGCGGTGGAATATATGTGGAGACCACCGGCTTCGGTGGC
AGATAATGACTAACGATGCTGG
BO17547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 963 | CG15414-RA | 257..960 | 722..19 | 3520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 497..1200 | 722..19 | 3520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3480957..3481660 | 19..722 | 3520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:23:37 has no hits.
BO17547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:34 Download gff for
BO17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-PA | 257..963 | 18..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:49:48 Download gff for
BO17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 497..1200 | 19..722 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:06 Download gff for
BO17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 497..1200 | 19..722 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:06 Download gff for
BO17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3480957..3481660 | 19..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:48 Download gff for
BO17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3480957..3481660 | 19..722 | 100 | | Plus |
BO17547.5prime Sequence
736 bp (697 high quality bases) assembled on 2006-10-13
> BO17547.5prime
GAAGTTATCAGTCGACATGCCTTACCACCGACTGAATATTTTGGGTCTGT
TGATTCTATCTTTGGTCTTGGCCAAGGCGGATGTGGGCTACCATTACAGC
AGACCAACGAGACCCACGGCTCCCTCGGCACCTTCGGGCGCAGGATCGGT
GTATACGGGTCACCAGTTCAGTGCGCTGCCCACCATCCATCCACTGCCTC
CGATTCCGGCACTTCCTCCACTGCCCACGGCCAGAGTTCCAATACCCAGG
AGTCGTCCCTCAGCTCCGGCTGCCAGCATCGTTAGTCATTATCTGCCACC
GAAGCCGGTGGTCTCCACATATATTCCACCGCCAGCTGCTGCACCCATCT
CATCTATAAGTTTCCACGGAACGCCCACTTTCAAACCCATCTACGGACCT
CCACCGCCGGCAAGGACTTCTCTTGCCACGCCCATCGTGGTGCCGCCCAC
GGGACCAGCTCCACTGACAGCGGGAGGAAATCTGCGCATTCCCTTCGGCA
AGCAGGCGTTGATCTCGCCCGGAGAATCCTACGTGGCCAATGGCAGGCAG
CTGAAGCAATATGCCGTCATCGAGATTATTGACAACGACATAGACGAGAC
CCCGGCTCCATTCCTGTCCGGAACGAGTTTCTTCGATCGCTATGGAGCAC
ATGTTGGTGCTCCATCCGCCAATGGAATCCAGCTGGACTCACGGGCTAAT
TCCTTGCTGCTGGAGCAGCAGCAGCTTTGCCTCCAG
BO17547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 963 | CG15414-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 241..951 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3481206..3481916 | 727..17 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:53 has no hits.
BO17547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:35 Download gff for
BO17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-PA | 1..720 | 17..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:30:39 Download gff for
BO17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 234..960 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:38 Download gff for
BO17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 234..960 | 10..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:38 Download gff for
BO17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3481197..3481916 | 17..736 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:30:39 Download gff for
BO17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3481197..3481916 | 17..736 | 99 | <- | Minus |
BO17547.complete Sequence
994 bp assembled on 2006-10-11
GenBank Submission: FJ634169
> BO17547.complete
GAAGTTATCAGTCGACATGCCTTACCACCGACTGAATATTTTGGGTCTGT
TGATTCTATCTTTGGTCTTGGCCAAGGCGGATGTGGGCTACCATTACAGC
AGACCAACGAGACCCACGGCTCCCTCGGCACCTTCGGGCGCAGGATCGGT
GTATACGGGTCACCAGTTCAGTGCGCTGCCCACCATCCATCCACTGCCTC
CGATTCCGGCACTTCCTCCACTGCCCACGGCCAGAGTTCCAATACCCAGG
AGTCGTCCCTCAGCTCCGGCTGCCAGCATCGTTAGTCATTATCTGCCACC
GAAGCCGGTGGTCTCCACATATATTCCACCGCCAGCTGCTGCACCCATCT
CATCTATAAGTTTCCACGGAACGCCCACTTTCAAACCCATCTACGGACCT
CCACCGCCGGCAAGGACTTCTCTTGCCACGCCCATCGTGGTGCCGCCCAC
GGGACCAGCTCCACTGACAGCGGGAGGAAATCTGCGCATTCCCTTCGGCA
AGCAGGCGTTGATCTCGCCCGGAGAATCCTACGTGGCCAATGGCAGGCAG
CTGAAGCAATATGCCGTCATCGAGATTATTGACAACGACATAGACGAGAC
CCCGGCTCCATTCCTGTCCGGAACGAGTTTCTTCGATCGCTATGGAGCAC
ATGTTGGTGCTCCATCCGCCAATGGAATCCAGCTGGACTCACGGGCTAAT
TCCTTGCTGCTGGAGCAGCAGCAGCTTGCCATCCAGCCCAGATCCCAGGG
TGGTGCATCGGGAGGGGATGCCATTGCCTTGGGATCGGGCGGCCTGGGCT
TTGTGCGTTTGCCCAACGGTAATGTGTATCTCGGCTCCGGATCCCTGGGC
TACATCAGTGGTCAGCAGCGGGTGGCCTCCGTTCTGGAGGCACGCACTCG
ATCGGAATCCACGTCGGATGCCCTGCACTTCGGTCATGGTCCGCTTGGCG
GAGTGGACAACCTGCTGAGGTTCAAGGCAAGCTTTCTAGACCAT
BO17547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 963 | CG15414-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 241..1200 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3480957..3481916 | 976..17 | 4800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:15:06 has no hits.
BO17547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:36 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 1..963 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:13 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 211..1177 | 10..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:19 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 241..1200 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:36 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 1..963 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:19 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 241..1200 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:19 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3480955..3481916 | 17..978 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:19 Download gff for
BO17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3480955..3481916 | 17..978 | 99 | | Minus |
BO17547.pep Sequence
Translation from 16 to 994
> BO17547.pep
MPYHRLNILGLLILSLVLAKADVGYHYSRPTRPTAPSAPSGAGSVYTGHQ
FSALPTIHPLPPIPALPPLPTARVPIPRSRPSAPAASIVSHYLPPKPVVS
TYIPPPAAAPISSISFHGTPTFKPIYGPPPPARTSLATPIVVPPTGPAPL
TAGGNLRIPFGKQALISPGESYVANGRQLKQYAVIEIIDNDIDETPAPFL
SGTSFFDRYGAHVGAPSANGIQLDSRANSLLLEQQQLAIQPRSQGGASGG
DAIALGSGGLGFVRLPNGNVYLGSGSLGYISGQQRVASVLEARTRSESTS
DALHFGHGPLGGVDNLLRFKASFLDH
BO17547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 320 | CG15414-PA | 1..320 | 1..320 | 1663 | 100 | Plus |
| CG31626-PB | 285 | CG31626-PB | 8..148 | 13..150 | 152 | 34 | Plus |
| CG31626-PA | 285 | CG31626-PA | 8..148 | 13..150 | 152 | 34 | Plus |
