Clone Sequence Records
BO17551.3prime Sequence
722 bp (560 high quality bases) assembled on 2006-10-13
> BO17551.3prime
ATGGTCTAGAAAGCTTGCCAGCAAAATGGGGCACTTGTACATAATGTTGA
TCTTATCGATGTCCTTGGAGCTAAGACCCACTCGCTGTCCAATTACCGCA
CTGGAATCTAGGGGAACTATAGTATCCTCGCCGTTGATAGAGAAGGCTCC
TGGTCGATAATGAAGACAGCTATCGTAGTCGTAACCAACTTCGAAATCGG
TCACGACTGTGTCGGCATACTTTTGGAAATTGAATTCCTTGCCCGGCACT
ATGTTTTCGTAGATCACGTTTATAAAATCATCTCGAATGGACGAGCTCTG
TTGGTGATAGAATCCCAAGGCGTGCATAAACTCATGCAGGATCGTTCCGG
GCCGGAAACAGCCTTCGCCGAGCGGGTATATTTCCAGATTCATTTCCTGC
GGGGCACCTTGGTAGCCGACGGCAGTGTAGCATCCTCCAGACTTGGCCGT
AACCGTCAAATAGGCCTTATCCTCATCGGTGGCTTCCCTAAACCTCAAAC
AAGTGTGCAGCTCCAAGGTATCGATGCCAGTTTGGATGGCCTTCTTGTGC
GCCGTGTCAAAGTCATCTGATATCCTGTAGACCACCACATTTCCAGGCCA
TCTCTTTTCCGTGTTGATAAGGCCATTGCGAGCCTTGGGAGCACCCTGCT
CCAGATTTCTTTGTTGCTCCTCCGTTAGCATCATATCACCCTCGACAAAT
CCACCTGCCTCCTCCGGATCGA
BO17551.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-PA | 786 | CG15255-RA | 81..783 | 721..19 | 3515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-RB | 1549 | CG15255-RB | 115..817 | 721..19 | 3515 | 100 | Minus |
CG15255-RA | 988 | CG15255-RA | 115..817 | 721..19 | 3515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15610903..15611605 | 19..721 | 3515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:38:21 has no hits.
BO17551.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:40 Download gff for
BO17551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-PA | 81..786 | 16..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:10 Download gff for
BO17551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 115..817 | 19..721 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:24 Download gff for
BO17551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 115..817 | 19..721 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:24 Download gff for
BO17551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15610903..15611605 | 19..721 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:10 Download gff for
BO17551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15610903..15611605 | 19..721 | 100 | | Plus |
BO17551.5prime Sequence
765 bp (665 high quality bases) assembled on 2006-10-13
> BO17551.5prime
GAAGTTATCAGTCGACATGTCGAGGTCTGGAATAATATATGTTCTTCTGC
TGCAAGTGGTGCTTAACTCTGGCAAACCCCTGCCAGCAGGTGTCTACGAT
CCGGAGGAGGCAGGTGGATTTGTCGAGGGTGATATGATGCTAACGGAGGA
GCAACAAAGAAATCTGGAGCAGGGTGCTCCCAAGGCTCGCAATGGCCTTA
TCAACACGGAAAAGAGATGGCCTGGAAATGTGGTGGTCTACAGGATATCA
GATGACTTTGACACGGCGCACAAGAAGGCCATCCAAACTGGCATCGATAC
CTTGGAGCTGCACACTTGTTTGAGGTTTAGGGAAGCCACCGATGAGGATA
AGGCCTATTTGACGGTTACGGCCAAGTCTGGAGGATGCTACACTGCCGTC
GGCTACCAAGGTGCCCCGCAGGAAATGAATCTGGAAATATACCCGCTCGG
CGAAGGCTGTTTCCGGCCCGGAACGATCCTGCATGAGTTTATGCACGCCT
TGGGATTCTATCACCAACAGAGCTCGTCCATTCGAGATGATTTTATAAAC
GTGATCTACGAAAACATAGTGCCGGGCAAGGAATTCAATTTCCAAAAGTA
TGCCGACACAGTCGTGACCGATTTCGAAGTTGGTTACGACTACGATAGCT
GTCTTCATTATCGACCAGGAGCCTTCTCTATCAACGGCGAGGATACTATA
GTTCCCCTAGATTCCAGTGCGGTAATTGGACAGCGAGTGGGTCTTACCTC
AAGGACATCGATAAG
BO17551.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-PA | 786 | CG15255-RA | 1..730 | 17..746 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-RB | 1549 | CG15255-RB | 35..784 | 17..765 | 3710 | 99.7 | Plus |
CG15255-RA | 988 | CG15255-RA | 35..784 | 17..765 | 3710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15610936..15611685 | 765..17 | 3685 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:10:19 has no hits.
BO17551.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:40 Download gff for
BO17551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-PA | 1..750 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:15 Download gff for
BO17551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 35..784 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:58 Download gff for
BO17551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 35..784 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:58 Download gff for
BO17551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15610936..15611685 | 17..765 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:15 Download gff for
BO17551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15610936..15611685 | 17..765 | 99 | | Minus |
BO17551.complete Sequence
817 bp assembled on 2006-10-11
GenBank Submission: FJ634170
> BO17551.complete
GAAGTTATCAGTCGACATGTCGAGGTCTGGAATAATATATGTTCTTCTGC
TGCAAGTGGTGCTTAACTCTGGCAAACCCCTGCCAGCAGGTGTCTACGAT
CCGGAGGAGGCAGGTGGATTTGTCGAGGGTGATATGATGCTAACGGAGGA
GCAACAAAGAAATCTGGAGCAGGGTGCTCCCAAGGCTCGCAATGGCCTTA
TCAACACGGAAAAGAGATGGCCTGGAAATGTGGTGGTCTACAGGATATCA
GATGACTTTGACACGGCGCACAAGAAGGCCATCCAAACTGGCATCGATAC
CTTGGAGCTGCACACTTGTTTGAGGTTTAGGGAAGCCACCGATGAGGATA
AGGCCTATTTGACGGTTACGGCCAAGTCTGGAGGATGCTACACTGCCGTC
GGCTACCAAGGTGCCCCGCAGGAAATGAATCTGGAAATATACCCGCTCGG
CGAAGGCTGTTTCCGGCCCGGAACGATCCTGCATGAGTTTATGCACGCCT
TGGGATTCTATCACCAACAGAGCTCGTCCATTCGAGATGATTTTATAAAC
GTGATCTACGAAAACATAGTGCCGGGCAAGGAATTCAATTTCCAAAAGTA
TGCCGACACAGTCGTGACCGATTTCGAAGTTGGTTACGACTACGATAGCT
GTCTTCATTATCGACCAGGAGCCTTCTCTATCAACGGCGAGGATACTATA
GTTCCCCTAGATTCCAGTGCGGTAATTGGACAGCGAGTGGGTCTTAGCTC
CAAGGACATCGATAAGATCAACATTATGTACAAGTGCCCCATTTTGCTGG
CAAGCTTTCTAGACCAT
BO17551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-RB | 786 | CG15255-PB | 1..783 | 17..799 | 3915 | 100 | Plus |
CG15255-RA | 786 | CG15255-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-RB | 1549 | CG15255-RB | 35..817 | 17..799 | 3915 | 100 | Plus |
CG15255-RA | 988 | CG15255-RA | 35..817 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15610903..15611685 | 799..17 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:58:38 has no hits.
BO17551.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:16 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:11 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 407..1192 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:27 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 35..817 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:16 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 407..1192 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:07 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15255-RA | 35..817 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:07 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15610900..15611685 | 17..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:27 Download gff for
BO17551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15610900..15611685 | 17..801 | 99 | | Minus |
BO17551.pep Sequence
Translation from 16 to 817
> BO17551.pep
MSRSGIIYVLLLQVVLNSGKPLPAGVYDPEEAGGFVEGDMMLTEEQQRNL
EQGAPKARNGLINTEKRWPGNVVVYRISDDFDTAHKKAIQTGIDTLELHT
CLRFREATDEDKAYLTVTAKSGGCYTAVGYQGAPQEMNLEIYPLGEGCFR
PGTILHEFMHALGFYHQQSSSIRDDFINVIYENIVPGKEFNFQKYADTVV
TDFEVGYDYDSCLHYRPGAFSINGEDTIVPLDSSAVIGQRVGLSSKDIDK
INIMYKCPILLASFLDH
BO17551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15255-PB | 261 | CG15255-PB | 1..261 | 1..261 | 1378 | 100 | Plus |
CG15255-PA | 261 | CG15255-PA | 1..261 | 1..261 | 1378 | 100 | Plus |
CG15254-PB | 254 | CG15254-PB | 30..251 | 28..258 | 591 | 48.9 | Plus |
CG15254-PA | 254 | CG15254-PA | 30..251 | 28..258 | 591 | 48.9 | Plus |
CG15253-PA | 253 | CG15253-PA | 7..249 | 9..258 | 548 | 44.1 | Plus |