Clone Sequence Records
BO17554.3prime Sequence
716 bp (714 high quality bases) assembled on 2006-10-13
> BO17554.3prime
ATGGTCTAGAAAGCTTGCATTTTTACCCTGATGATGTGTCTCTGGCGGAG
CTCGACGTTGTGCAAGTGTTGCATGCTTGTTATGCATTTTGTTGAGGATT
CTTTTGCGGTCCATAGTCAGCTTAGCGAGTTGTTCCTCCACCTTATCCAT
CATTTCGGTTTGCAGATGTATACATGATTGGACACTAACGCCTCTGATCG
CAAGTTGGCCGATGTGAAAAGACAACTGAGCATTGGTACCAGTTAGGACA
AAGAAGCCTGTTATGCCAAAAATCCTAATAGGCGGTTTGGGATTTCTAGC
TAGCTCAGAAGGCTTGAAGCATTTGACTTTAACTTCATTCTCCAGGTTAT
TGAAAACTGGTCGTGGCAACAGCAAATCTGCACCGTGATCAGGTTCCTTT
TCCATCGGAATTGGGGATTTTGAACAGAGTAGGTTTCGTGTCGGCAGGAC
AGAGTGGAAGTGCGACTTAATTTGTTCGCAAAATTTGGACATCAATGGCA
CGCTGGAGTTTGGAGTTTTATTGGCCCCTTTATTGGTGTTCCTTGGAACC
AGTGCAATAAATTTATTGTCCTTATCATATCCGGATGAAGTGGTATTTTT
GGAATTGTTCCGCGTCAAAAGCCTTCTTTTTTATTTCCGACAAGAAGGTT
TTCTTGTGACTAGTTAATCGAATTTTTTGCAGAGCATCACACAGCTGAAT
TTTCTTTTCGGATTCG
BO17554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 951 | CG31525-RA | 368..948 | 599..19 | 2905 | 100 | Minus |
| CG31525-PA | 951 | CG31525-RA | 252..371 | 716..597 | 600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 391..1087 | 716..19 | 3465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427420..4428116 | 716..19 | 3440 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:08 has no hits.
BO17554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:46 Download gff for
BO17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-PA | 252..951 | 15..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:49:49 Download gff for
BO17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 391..1090 | 15..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:12 Download gff for
BO17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 391..1090 | 15..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:12 Download gff for
BO17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427420..4428125 | 13..716 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:49:49 Download gff for
BO17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 253142..253847 | 13..716 | 99 | -> | Minus |
BO17554.5prime Sequence
716 bp (705 high quality bases) assembled on 2006-10-13
> BO17554.5prime
GAAGTTATCAGTCGACATGCCAAAAAAAGTGATCACAAGGCGTCAACGCA
AAGCTGCAGAGTCCCGGCTAAGGGCCACAAAGGAAGCAAGTCAGAAGAAT
TGGCCCAGGATAATAGAAGTTATACCGATTCCCCCAATCTCTCGTTCGAC
TAATTCAACTAGCTCAAAGGAAACATACTCAAAGAAAAAAGATATAGGTA
TGTCCCAGACGACTTTAGATGGAAAGAATGAGAAGGAAAAAACTCCGTCT
TTGGAACAGTCAATCCACGAATCCGAAAAGAAAATTCAGCTGTGTGATGC
TCTGCAAAAAATTCGATTAACTAGTCACAAGAAAACCTTCTTGTCGGAAA
TAAAAAAGAAGGCTTTTGACGCGGAACAATTCCAAAATACCACTTCATCC
GGATATGATAAGGACAATAAATTTATTGCACTGGTTCCAAGGAACACCAA
TAAAGGGGCCAATAAAACTCCAAACTCCAGCGTGCCATTGATGTCCAAAT
TTTGCGAACAAATTAAGTCGCACTTCCACTCTGTCCTGCCGACACGAAAC
CTACTCTGTTCAAAATCCCCAATTCCGATGGAAAAGGAACCTGATCACGG
TGCAGATTTGCTGTTGCCACGACCAGTTTTCAATAACCTGGAGAATGAAG
TTAAAGTCAAATGCTTCAAGCCTTCTGAGCTAGCTAGAAATCCCAAACCG
CCTATTAGGATTTTTG
BO17554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 951 | CG31525-RA | 1..700 | 17..716 | 3500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 136..839 | 13..716 | 3505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427165..4427868 | 13..716 | 3505 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:57:29 has no hits.
BO17554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:09:46 Download gff for
BO17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-PA | 1..700 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:41 Download gff for
BO17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..839 | 13..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:29 Download gff for
BO17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..839 | 13..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:29 Download gff for
BO17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427165..4427868 | 13..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:41 Download gff for
BO17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 252887..253590 | 13..716 | 99 | | Plus |
BO17554.complete Sequence
982 bp assembled on 2006-10-11
GenBank Submission: FJ634171
> BO17554.complete
GAAGTTATCAGTCGACATGCCAAAAAAAGTGATCACAAGGCGTCAACGCA
AAGCTGCAGAGTCCCGGCTAAGGGCCACAAAGGAAGCAAGTCAGAAGAAT
TGGCCCAGGATAATAGAAGTTATACCGATTCCCCCAATCTCTCGTTCGAC
TAATTCAACTAGCTCAAAGGAAACATACTCAAAGAAAAAAGATATAGGTA
TGTCCCAGACGACTTTAGATGGAAAGAATGAGAAGGAAAAAACTCCGTCT
TTGGAACAGTCAATCCACGAATCCGAAAAGAAAATTCAGCTGTGTGATGC
TCTGCAAAAAATTCGATTAACTAGTCACAAGAAAACCTTCTTGTCGGAAA
TAAAAAAGAAGGCTTTTGACGCGGAACAATTCCAAAATACCACTTCATCC
GGATATGATAAGGACAATAAATTTATTGCACTGGTTCCAAGGAACACCAA
TAAAGGGGCCAATAAAACTCCAAACTCCAGCGTGCCATTGATGTCCAAAT
TTTGCGAACAAATTAAGTCGCACTTCCACTCTGTCCTGCCGACACGAAAC
CTACTCTGTTCAAAATCCCCAATTCCGATGGAAAAGGAACCTGATCACGG
TGCAGATTTGCTGTTGCCACGACCAGTTTTCAATAACCTGGAGAATGAAG
TTAAAGTCAAATGCTTCAAGCCTTCTGAGCTAGCTAGAAATCCCAAACCG
CCTATTAGGATTTTTGGCATAACAGGCTTCTTTGTCCTAACTGGTACCAA
TGCTCAGTTGTCTTTTCACATCGGCCAACTTGCGATCAGAGGCGTTAGTG
TCCAATCATGTATACATCTGCAAACCGAAATGATGGATAAGGTGGAGGAA
CAACTCGCTAAGCTGACTATGGACCGCAAAAGAATCCTCAACAAAATGCA
TAACAAGCATGCAACACTTGCACAACGTCGAGCTCCGCCAGAGACACATC
ATCAGGGTAAAAATGCAAGCTTTCTAGACCAT
BO17554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 951 | CG31525-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 136..1087 | 13..964 | 4745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427165..4428116 | 13..964 | 4745 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:19:58 has no hits.
BO17554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:17 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:37 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1087 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:04 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1087 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:18 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..1090 | 13..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:37 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1087 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:37 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427169..4428116 | 17..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:04 Download gff for
BO17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 252891..253838 | 17..966 | 99 | | Plus |
BO17554.pep Sequence
Translation from 16 to 982
> BO17554.pep
MPKKVITRRQRKAAESRLRATKEASQKNWPRIIEVIPIPPISRSTNSTSS
KETYSKKKDIGMSQTTLDGKNEKEKTPSLEQSIHESEKKIQLCDALQKIR
LTSHKKTFLSEIKKKAFDAEQFQNTTSSGYDKDNKFIALVPRNTNKGANK
TPNSSVPLMSKFCEQIKSHFHSVLPTRNLLCSKSPIPMEKEPDHGADLLL
PRPVFNNLENEVKVKCFKPSELARNPKPPIRIFGITGFFVLTGTNAQLSF
HIGQLAIRGVSVQSCIHLQTEMMDKVEEQLAKLTMDRKRILNKMHNKHAT
LAQRRAPPETHHQGKNASFLDH
BO17554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 316 | CG31525-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
